DC900183

Overview
NameDC900183
Unique NameDC900183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: YPT4_SCHPO (GTP-binding protein ypt4 OS=Schizosaccharomyces pombe GN=ypt4 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 49/168 (29.17%), Postives = 93/168 (55.36%), Query Frame = 2
Query:   59 QQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQVKAKQVT-FHRKKNL-QYYEISAKSNYNFEKPFL 538
            +++ DY   K+V+ G  GTGK+  ++R +  +++ +   T+G++          G    +I+   WDTAGQEKF  +   YY     A++++DVT + +++ + +W  D+  +    I +VL G+K D++N RQV  ++   F  +K++   +E S+ +  N E+ FL
Sbjct:    3 KESYDY-LVKIVLAGPSGTGKSCLLQRFVKNQWDDQVSHTVGIDFASRIISVGMGNQQKRIKLQIWDTAGQEKFRSVARNYYRGAAGAVLVYDVTNKDSFEELSSWLSDIRAMAPSTICVVLAGSKSDLQNQRQVSTEEAAEFCSEKHISSAHETSSYTGSNVEECFL 169          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RHOG_MOUSE (Rho-related GTP-binding protein RhoG OS=Mus musculus GN=Rhog PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 2
Query:   80 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 433
            S K V+VGDG  GKT  +  + T  F K+Y PT+  + +      +   +    WDTAGQE++  LR   Y      +I F + +  +Y+NV   WH ++C  C ++PI+L G K D++
Sbjct:    3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR 120          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RHOG_HUMAN (Rho-related GTP-binding protein RhoG OS=Homo sapiens GN=RHOG PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 2
Query:   80 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 433
            S K V+VGDG  GKT  +  + T  F K+Y PT+  + +      +   +    WDTAGQE++  LR   Y      +I F + +  +Y+NV   WH ++C  C ++PI+L G K D++
Sbjct:    3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR 120          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RHOG_CRICR (Rho-related GTP-binding protein RhoG OS=Cricetus cricetus GN=RHOG PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 41/119 (34.45%), Postives = 64/119 (53.78%), Query Frame = 2
Query:   80 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVK 433
            S K V+VGDG  GKT  +  + T  F K+Y PT+  + +      +   +    WDTAGQE++  LR   Y      +I F + +  +Y+NV   WH ++C  C ++PI+L G K D++
Sbjct:    3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTV-FDNYSAQSAVDGRTVNLNLWDTAGQEEYDRLRTLSYPQTNVFVICFSIASPPSYENVRHKWHPEVCHHCPDVPILLVGTKKDLR 120          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RHO5_SCHPO (GTP-binding protein rho5 OS=Schizosaccharomyces pombe GN=rho5 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 58/171 (33.92%), Postives = 78/171 (45.61%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDVKN--------RQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPFLYLAR 550
            KLVIVGDG  GKT  +     G F + Y PT+  E +  D   +   I    WDTAGQE +  LR   Y      +I F V A  +  NV   W  ++   C N+PI+L G KVD++N         +   K +TF   + +       +Y E SAK N    + F   AR
Sbjct:    8 KLVIVGDGACGKTCLLIVFSKGTFPEVYVPTV-FENYVADVEVDGRHIELALWDTAGQEDYDRLRPLSYPDSHVVLICFSVDAPESLDNVQEKWISEVLHFCSNLPILLVGCKVDLRNDPKTIEELSKTSQKPITFEEGQVVAQKIGAYKYLECSAKLNEGVNEVFETAAR 177          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RB39A_MOUSE (Ras-related protein Rab-39A OS=Mus musculus GN=Rab39 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 52/174 (29.89%), Postives = 85/174 (48.85%), Query Frame = 2
Query:   62 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKY----EPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            +T+    F+L+++GD   GK+  + R   G F   +    +PT+GV+          GK I+   WDTAGQE+F  +   YY +     ++FD+T R ++++V  W  +     +   IV  L G+K D+   RQV  ++         ++Y E SAK   N E+ F  L R +
Sbjct:    2 ETIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLHSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMHVQPFQIVFLLVGHKCDLASQRQVSREEAERLSTDCGMKYIETSAKDATNVEESFTILTRDI 175          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RB22A_MOUSE (Ras-related protein Rab-22A OS=Mus musculus GN=Rab22a PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 48/160 (30.00%), Postives = 81/160 (50.62%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 556
            K+ ++GD G GK++ V R +   F+    PTIG               +F  WDTAGQE+F  L   YY     AII++D+T   T+  +  W R+L +    +I + + GNK D+ + R+V  +    +    +  + E SAK+  N  + F+ ++R++
Sbjct:    7 KVCLLGDTGVGKSSIVWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGQERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININELFIEISRRI 166          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAS1_YEAST (Ras-like protein 1 OS=Saccharomyces cerevisiae GN=RAS1 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 49/165 (29.70%), Postives = 91/165 (55.15%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN--IPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 565
            +K+V+VG GG GK+    + +   F  +Y+PTI           +   I     DTAGQE++  +R+ Y   G+  ++++ VT+R ++  + ++++ + RV ++  IP+V+ GNK+D++N RQV  +  +   ++ N  + E SAK   N ++ F  L R +  D
Sbjct:   11 YKIVVVGGGGVGKSALTIQFIQSYFVDEYDPTIEDSYRKQVVIDDKVSI-LDILDTAGQEEYSAMREQYMRTGEGFLLVYSVTSRNSFDELLSYYQQIQRVKDSDYIPVVVVGNKLDLENERQVSYEDGLRLAKQLNAPFLETSAKQAINVDEAFYSLIRLVRDD 174          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RALB_MOUSE (Ras-related protein Ral-B OS=Mus musculus GN=Ralb PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 47/162 (29.01%), Postives = 86/162 (53.09%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDV-KNRQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 556
            K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D+ + RQV   +     ++  +QY E SAK+  N +K F  L R++
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKSEEDKIPLLVVGNKSDLEERRQVPVDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREI 176          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB31_HUMAN (Ras-related protein Rab-31 OS=Homo sapiens GN=RAB31 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 53/165 (32.12%), Postives = 85/165 (51.52%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN---CGKI--RFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC-RVCENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 556
            K+ ++GD G GK++ V R +   F+    PTIG       F T    CG    +F  WDTAGQE+F  L   YY     A+I++D+T + ++  +  W ++L     ENI + + GNK D+ + R+V  K    + +       E SAK+  N E+ F  ++R++
Sbjct:    7 KVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGAS-----FMTKTVPCGNELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITKQDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEELFQGISRQI 166          
The following BLAST results are available for this feature:
BLAST of DC900183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
YPT4_SCHPO7.482e-1429.17GTP-binding protein ypt4 OS=Schizosaccharomyces po... [more]
RHOG_MOUSE7.482e-1434.45Rho-related GTP-binding protein RhoG OS=Mus muscul... [more]
RHOG_HUMAN7.482e-1434.45Rho-related GTP-binding protein RhoG OS=Homo sapie... [more]
RHOG_CRICR7.482e-1434.45Rho-related GTP-binding protein RhoG OS=Cricetus c... [more]
RHO5_SCHPO7.482e-1433.92GTP-binding protein rho5 OS=Schizosaccharomyces po... [more]
RB39A_MOUSE7.482e-1429.89Ras-related protein Rab-39A OS=Mus musculus GN=Rab... [more]
RB22A_MOUSE7.482e-1430.00Ras-related protein Rab-22A OS=Mus musculus GN=Rab... [more]
RAS1_YEAST7.482e-1429.70Ras-like protein 1 OS=Saccharomyces cerevisiae GN=... [more]
RALB_MOUSE7.482e-1429.01Ras-related protein Ral-B OS=Mus musculus GN=Ralb ... [more]
RAB31_HUMAN7.482e-1432.12Ras-related protein Rab-31 OS=Homo sapiens GN=RAB3... [more]

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Properties
Property NameValue
Genbank descriptionDC900183 VSS Citrus sinensis cDNA clone VS28210 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900183 ID=DC900183; Name=DC900183; organism=Citrus sinensis; type=EST; length=672bp
CAGACCGCGAACTTCGTATTCTTTCGCACACAGTACTCAACTCATGGCTC
TGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTC
GGCGACGGTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGG
GGAGTTTGAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGT
TGGATTTCTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACT
GCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGG
GCAATGTGCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGA
ATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCG
ATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGC
AAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTT
CTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGG
AAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGC
TCCTCCAGAAGTACAGATTGACTTAGCTGACAGCAACACATGAAGCCGAG
CTTGCCGANCAGCTAGCCAGCC
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