DC900183

Overview
NameDC900183
Unique NameDC900183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB7B_MOUSE (Ras-related protein Rab-7b OS=Mus musculus GN=Rab7b PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 53/182 (29.12%), Postives = 101/182 (55.49%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRD-LCRVC---ENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLAR----KLAGDPNLHFVESPALAP 604
            KL+IVG  G GKT+ + +++   F ++Y+ T+G  +       +   ++   WDT GQE+F  +   +Y      I+ FDVT   +++ +  W  D L ++    ++ P+V+ GNK+D+++R+V  + V  + ++K++ Y+E+SAK++ N  + F  LA     +  G    H ++S  L+P
Sbjct:   10 KLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDTGGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIIPMEQSYPMVVLGNKIDLEDRKVSQEVVHGWCKEKDMPYFEVSAKNDINVVQAFEVLASRALLRYQGTAENHLIDSIKLSP 191          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB6A_CAEEL (Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 60/183 (32.79%), Postives = 91/183 (49.73%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLC--RVCENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALA---PPE 610
            FKLV +G+   GKT+ + R +   F+  Y+ TIG++      +     IR   WDTAGQE+F  L   Y      A++++D+T   ++     W  D+   R C+ I IVL GNK D+ + RQV  +      R  N+ + E SAK+ YN ++ F  +A  L G       E P +    PP+
Sbjct:   12 FKLVFLGEQSVGKTSIITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITNANSFHQTTKWVDDVRNERGCDVI-IVLVGNKTDLADKRQVSTEDGEKKARDLNVMFIETSAKAGYNVKQLFRKIATALPGIVQEETPEQPNIVIMNPPK 193          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB2A_RAT (Ras-related protein Rab-2A OS=Rattus norvegicus GN=Rab2a PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.541e-18
Identity = 52/161 (32.30%), Postives = 89/161 (55.28%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FK +I+GD G GK+  + +     F+  ++ T+GVE        +  +I+   WDTAGQE F  +   YY     A++++D+T R T+ ++ TW  D  +    N+ I+L GNK D+++R+   K+    F R+  L + E SAK+  N E+ F+  A+++
Sbjct:    7 FKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTMGVEFGARMITIDGKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITRRDTFNHLTTWLEDARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAREHGLIFMETSAKTASNVEEAFINTAKEI 167          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: YPT2_SCHPO (GTP-binding protein ypt2 OS=Schizosaccharomyces pombe GN=ypt2 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 54/174 (31.03%), Postives = 94/174 (54.02%), Query Frame = 2
Query:   56 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPFLYLARKL 556
            S ++ DY   KL+++GD G GK+  + R     F   +  TIG++        +  +I+   WDTAGQE+F  +   YY      ++++DVT + ++ NV TW  ++     EN+  +L GNK D +++    +QV+F + + L      ++ E SAK+N N ++ F  LAR++
Sbjct:    2 STKSYDY-LIKLLLIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLLYDVTDKKSFDNVRTWFSNVEQHASENVYKILIGNKCDCEDQ----RQVSFEQGQALADELGVKFLEASAKTNVNVDEAFFTLAREI 170          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RB11A_LOTJA (Ras-related protein Rab11A OS=Lotus japonicus GN=RAB11A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 59/186 (31.72%), Postives = 92/186 (49.46%), Query Frame = 2
Query:   68 VDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ 616
            +DY  FK+V++GD   GK+  + R    EF    + TIGVE        +   ++   WDTAGQE++  +   YY     A++++D+T R T+ ++P W  +L    + NI I+L GNK D+ N R V  +    F  K+ L + E SA    N E  F  +  ++      + V   +LA  E Q
Sbjct:   14 IDYV-FKVVLIGDSAVGKSQILARFARNEFSLDSKSTIGVEFQTRTLVIDHKTVKAQIWDTAGQERYRAVTSAYYRGAVGAMLVYDITKRQTFDHIPRWLEELRNHADKNIVIILIGNKCDLVNQRDVPTEDAKEFAEKEGLFFLETSALEATNVESAFTTVLTEI-----YNIVNKKSLAADESQ 193          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB7_CENCI (Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 51/160 (31.87%), Postives = 80/160 (50.00%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDV---KNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPF 535
            K++I+GD G GKT+ + +++  +F  +Y+ TIG +    +            WDTAGQE+F  L   +Y    C ++++DV +  ++ N+  W  +          +N P VL GNKVDV    +R V  K+       K N+ Y+E SAK   N E  F
Sbjct:   10 KVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVQFEDRLFTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNSMKSFDNLNNWREEFLIQASPSDPDNFPFVLLGNKVDVDGGNSRVVSEKKAKAWCASKGNIPYFETSAKEGTNVEDAF 169          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB5_TOBAC (Ras-related protein Rab5 OS=Nicotiana tabacum GN=RAB5 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 57/173 (32.95%), Postives = 94/173 (54.34%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKN-RQVKAKQVTFHRKKN-LQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPA 595
            KLV++GD G GK++ V R + G+F +  E TIG          N   ++F  WDTAGQE++  L   YY     AII++D+T+  +      W ++L +    N+ + L GNK D+++ R+V A++   + ++N L + E SAK+  N    F  +A++L   P     ++PA
Sbjct:   12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTVSVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSTESLARAKKWVQELQKQGNPNMVMALAGNKADLEDKRKVTAEEARLYAEENGLFFMETSAKTATNVNDIFYEIAKRL---PRAQPAQNPA 181          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB43_RAT (Ras-related protein Rab-43 OS=Rattus norvegicus GN=Rab43 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 57/166 (34.34%), Postives = 88/166 (53.01%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL-QYYEI------SAKSNYNFEKPFLYLARKL 556
            FKLV+VGD   GKT  V+R  TG F  +   TIGV+           +++   WDTAGQE+F  +   YY     AI+ +D++ R T+ +VP W  D+ +    NI  +L GNK D+ +     ++V     ++L ++Y+I      SAK + N E+ F  +A +L
Sbjct:   17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLAD----LREVPLAEAQSLAEHYDILCAIETSAKDSSNVEEAFTRVATEL 178          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB3A_RAT (Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 49/165 (29.70%), Postives = 87/165 (52.73%), Query Frame = 2
Query:   56 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 535
            S Q  DY  FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V    + +Q+  H     +++E SAK N N ++ F
Sbjct:   15 SDQNFDY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH--LGFEFFEASAKDNINVKQTF 176          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB3A_PIG (Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 49/165 (29.70%), Postives = 87/165 (52.73%), Query Frame = 2
Query:   56 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 535
            S Q  DY  FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V    + +Q+  H     +++E SAK N N ++ F
Sbjct:   15 SDQNFDY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH--LGFEFFEASAKDNINVKQTF 176          
The following BLAST results are available for this feature:
BLAST of DC900183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB7B_MOUSE8.541e-1829.12Ras-related protein Rab-7b OS=Mus musculus GN=Rab7... [more]
RAB6A_CAEEL8.541e-1832.79Ras-related protein Rab-6.1 OS=Caenorhabditis eleg... [more]
RAB2A_RAT8.541e-1832.30Ras-related protein Rab-2A OS=Rattus norvegicus GN... [more]
YPT2_SCHPO1.115e-1731.03GTP-binding protein ypt2 OS=Schizosaccharomyces po... [more]
RB11A_LOTJA1.115e-1731.72Ras-related protein Rab11A OS=Lotus japonicus GN=R... [more]
RAB7_CENCI1.115e-1731.88Ras-related protein Rab7 OS=Cenchrus ciliaris PE=2... [more]
RAB5_TOBAC1.115e-1732.95Ras-related protein Rab5 OS=Nicotiana tabacum GN=R... [more]
RAB43_RAT1.115e-1734.34Ras-related protein Rab-43 OS=Rattus norvegicus GN... [more]
RAB3A_RAT1.115e-1729.70Ras-related protein Rab-3A OS=Rattus norvegicus GN... [more]
RAB3A_PIG1.115e-1729.70Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A ... [more]

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Properties
Property NameValue
Genbank descriptionDC900183 VSS Citrus sinensis cDNA clone VS28210 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900183 ID=DC900183; Name=DC900183; organism=Citrus sinensis; type=EST; length=672bp
CAGACCGCGAACTTCGTATTCTTTCGCACACAGTACTCAACTCATGGCTC
TGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTC
GGCGACGGTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGG
GGAGTTTGAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGT
TGGATTTCTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACT
GCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGG
GCAATGTGCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGA
ATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCG
ATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGC
AAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTT
CTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGG
AAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGC
TCCTCCAGAAGTACAGATTGACTTAGCTGACAGCAACACATGAAGCCGAG
CTTGCCGANCAGCTAGCCAGCC
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