DC900183

Overview
NameDC900183
Unique NameDC900183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:927..1598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB3A_MOUSE (Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 49/165 (29.70%), Postives = 87/165 (52.73%), Query Frame = 2
Query:   56 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 535
            S Q  DY  FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V    + +Q+  H     +++E SAK N N ++ F
Sbjct:   15 SDQNFDY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH--LGFEFFEASAKDNINVKQTF 176          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB3A_MACFA (Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 49/165 (29.70%), Postives = 87/165 (52.73%), Query Frame = 2
Query:   56 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 535
            S Q  DY  FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V    + +Q+  H     +++E SAK N N ++ F
Sbjct:   15 SDQNFDY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH--LGFEFFEASAKDNINVKQTF 176          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB3A_HUMAN (Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 49/165 (29.70%), Postives = 87/165 (52.73%), Query Frame = 2
Query:   56 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 535
            S Q  DY  FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V    + +Q+  H     +++E SAK N N ++ F
Sbjct:   15 SDQNFDY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH--LGFEFFEASAKDNINVKQTF 176          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB3A_BOVIN (Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 49/165 (29.70%), Postives = 87/165 (52.73%), Query Frame = 2
Query:   56 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQV----KAKQVTFHRKKNLQYYEISAKSNYNFEKPF 535
            S Q  DY  FK++I+G+   GKT+F+ R+    F   +  T+G++      + N  +I+   WDTAGQE++  +   YY      I+M+D+T   ++  V  W   +     +N  ++L GNK D+++ +V    + +Q+  H     +++E SAK N N ++ F
Sbjct:   15 SDQNFDY-MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH--LGFEFFEASAKDNINVKQTF 176          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB1B_MACFA (Ras-related protein Rab-1B OS=Macaca fascicularis GN=RAB1B PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 52/161 (32.30%), Postives = 84/161 (52.17%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT R +Y NV  W +++ R   EN+  +L GNK D+  ++V        F     + + E SAK+  N E+ F+ +A ++
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDRESYANVKQWLQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFADSLGIPFLETSAKNATNVEQAFMTMAAEI 169          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB1B_DICDI (Ras-related protein Rab-1B OS=Dictyostelium discoideum GN=rab1B PE=2 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 48/161 (29.81%), Postives = 86/161 (53.42%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT  +++ NV  W +++ R  C+++  +L GNK D+  +++        +     + + E SAKS+ N E+ F+ +A ++
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTINLDGKIIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDHVSFNNVKQWMQEIQRYACDSVTRLLVGNKCDLIEKKIVDTSTAREYADSVGIPFLETSAKSSANVEQAFMIMASEI 169          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB18_CAEBR (Ras-related protein Rab-18 OS=Caenorhabditis briggsae GN=rab-18 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 48/168 (28.57%), Postives = 90/168 (53.57%), Query Frame = 2
Query:   80 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC--ENIPIVLCGNKVDVKNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNL 574
            + K++I+G+ G GK++ + R +   F+ +   TIGV+        +  +++   WDTAGQE+F  L   YY   Q  I ++DVT+R +++ +  W  ++   C  +N+  ++  NK+D+ NR V  ++ + F ++    + E SAK+    +  F  L  K+   P+L
Sbjct:   11 TLKILIIGESGVGKSSLMLRFVDDVFDPEQAATIGVDFRVTSMTIDGNRVKLAIWDTAGQERFRTLTPSYYRGAQGVICVYDVTSRSSFEKLKHWMTEVDTYCTNDNVIKMMVANKIDMPNRTVTREEGLKFAKRHRTLFIEASAKTKEGVQCTFEELIEKIIQTPDL 178          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB14_RAT (Ras-related protein Rab-14 OS=Rattus norvegicus GN=Rab14 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 56/163 (34.36%), Postives = 86/163 (52.76%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ ++     +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct:   12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB14_PONAB (Ras-related protein Rab-14 OS=Pongo abelii GN=RAB14 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 56/163 (34.36%), Postives = 86/163 (52.76%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ ++     +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct:   12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB14_PIG (Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 56/163 (34.36%), Postives = 86/163 (52.76%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ ++     +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct:   12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
The following BLAST results are available for this feature:
BLAST of DC900183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB3A_MOUSE1.115e-1729.70Ras-related protein Rab-3A OS=Mus musculus GN=Rab3... [more]
RAB3A_MACFA1.115e-1729.70Ras-related protein Rab-3A OS=Macaca fascicularis ... [more]
RAB3A_HUMAN1.115e-1729.70Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3... [more]
RAB3A_BOVIN1.115e-1729.70Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A ... [more]
RAB1B_MACFA1.115e-1732.30Ras-related protein Rab-1B OS=Macaca fascicularis ... [more]
RAB1B_DICDI1.115e-1729.81Ras-related protein Rab-1B OS=Dictyostelium discoi... [more]
RAB18_CAEBR1.115e-1728.57Ras-related protein Rab-18 OS=Caenorhabditis brigg... [more]
RAB14_RAT1.115e-1734.36Ras-related protein Rab-14 OS=Rattus norvegicus GN... [more]
RAB14_PONAB1.115e-1734.36Ras-related protein Rab-14 OS=Pongo abelii GN=RAB1... [more]
RAB14_PIG1.115e-1734.36Ras-related protein Rab-14 OS=Sus scrofa GN=RAB14 ... [more]

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Properties
Property NameValue
Genbank descriptionDC900183 VSS Citrus sinensis cDNA clone VS28210 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900183 ID=DC900183; Name=DC900183; organism=Citrus sinensis; type=EST; length=672bp
CAGACCGCGAACTTCGTATTCTTTCGCACACAGTACTCAACTCATGGCTC
TGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTC
GGCGACGGTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGG
GGAGTTTGAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGT
TGGATTTCTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACT
GCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGG
GCAATGTGCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGA
ATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCG
ATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGC
AAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTT
CTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGG
AAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGC
TCCTCCAGAAGTACAGATTGACTTAGCTGACAGCAACACATGAAGCCGAG
CTTGCCGANCAGCTAGCCAGCC
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