DC900183

Overview
NameDC900183
Unique NameDC900183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:927..1598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB14_MOUSE (Ras-related protein Rab-14 OS=Mus musculus GN=Rab14 PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 56/163 (34.36%), Postives = 86/163 (52.76%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ ++     +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct:   12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB14_HUMAN (Ras-related protein Rab-14 OS=Homo sapiens GN=RAB14 PE=1 SV=4)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 56/163 (34.36%), Postives = 86/163 (52.76%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ ++     +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct:   12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB14_CHICK (Ras-related protein Rab-14 OS=Gallus gallus GN=RAB14 PE=2 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.115e-17
Identity = 56/163 (34.36%), Postives = 86/163 (52.76%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQ----VKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FK +I+GD G GK+  + +    +F      TIGVE        +  KI+   WDTAGQE+F  +   YY     A++++D+T R TY ++ +W  D   +   N  I+L GNK D++ ++     +AKQ  F  +  L + E SAK+  N E  FL  A+K+
Sbjct:   12 FKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQ--FAEENGLLFLEASAKTGENVEDAFLEAAKKI 172          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: YPT7_SCHPO (GTP-binding protein ypt7 OS=Schizosaccharomyces pombe GN=ypt7 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 47/164 (28.66%), Postives = 87/164 (53.05%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-----ENIPIVLCGNKVDVKNRQ---VKAKQVTF-HRKKNLQYYEISAKSNYNFEKPFLYLAR 550
            K++I+G+ G GKT+ + +++  +F K Y+ TIG +    +   +   +    WDTAGQE+F  L   +Y    C ++++DV    +++ + +W  +          E  P +L GNKVDV+ ++    K+K + F   +  + Y+E SAK   N ++ F  +A+
Sbjct:   10 KVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTKEVLVDDKVVTLQLWDTAGQERFQSLGVAFYRGADCCVLVYDVNNSKSFETLDSWRDEFLIQASPSNPETFPFILLGNKVDVEEQKRMVSKSKALAFCQARGEIPYFETSAKEAINVQEAFETVAK 173          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RB11D_LOTJA (Ras-related protein Rab11D OS=Lotus japonicus GN=RAB11D PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 50/154 (32.47%), Postives = 81/154 (52.60%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQVKAKQ--VTFHRKKNLQYYEISAKSNYNFEKPF 535
            FKLV++GD G GK+  + R    EF  + + TIGVE        +   ++   WDTAGQE++  +   YY     A++++DVT R T++N   W ++L      NI ++L GNK D+++      +   +F  +++L + E SA    N E  F
Sbjct:   14 FKLVLIGDSGVGKSNLLSRFTKNEFNLESKSTIGVEFATKTLNVDAKVVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDVTRRATFENAARWLKELRDHTDPNIVVMLIGNKSDLRHLVAVPTEDGKSFAERESLYFMETSALEATNVENAF 167          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB43_MOUSE (Ras-related protein Rab-43 OS=Mus musculus GN=Rab43 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 59/163 (36.20%), Postives = 87/163 (53.37%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKN-RQV---KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FKLV+VGD   GKT  V+R  TG F  +   TIGV+           +++   WDTAGQE+F  +   YY     AI+ +D++ R T+ +VP W  D+ +    NI  +L GNK D+ + R+V   +A+ +  H    L   E SAK + N E+ F  +A +L
Sbjct:   17 FKLVLVGDASVGKTCVVQRFKTGAFSARQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDISKRSTFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLADFREVPLAEAQSLAEH-YDILCAIETSAKDSSNVEEAFTRVATEL 178          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB3_DROME (Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 50/167 (29.94%), Postives = 89/167 (53.29%), Query Frame = 2
Query:   56 SQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQVTFHRKKNL------QYYEISAKSNYNFEKPF 535
            + Q  DY  FKL+I+G+   GKT+F+ R+    F   +  T+G++      F +  +++   WDTAGQE++  +   YY      I+M+DVT   ++ +V  W   +     +N  ++L GNK D+++++V    ++F R + L      +++E SAK N N +  F
Sbjct:   14 ADQNFDY-MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRHDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDVTNEDSFNSVQDWVTQIKTYSWDNAQVILVGNKCDMEDQRV----ISFERGRQLADQLGVEFFETSAKENVNVKAVF 175          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB33_CIOIN (Putative Ras-related protein Rab-33 OS=Ciona intestinalis GN=COS41.2 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.457e-17
Identity = 57/167 (34.13%), Postives = 89/167 (53.29%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN---IPIVLCGNKVDVKNR-QVKAKQVT-FHRKKNLQYYEISAKSNY---NFEKPFLYLARKL 556
            FK++++GD   GKT    R  TG+F +K E TIGV+        +  +I+   WDTAGQE+F   +   YY +    +  +DVT   +++ +P+W  +  R   N   IP +L GNK D+K++ +V     T F    ++  +E SAK++    N E  FL +A KL
Sbjct:   16 FKIIVIGDSDVGKTCLTYRFCTGKFPEKTEATIGVDFRERTLDIDGEQIKLQLWDTAGQERFRKSMVPHYYRNVHAVVFTYDVTKGRSFQGLPSWIEECERYSLNASEIPRILVGNKCDLKDQAEVDTNSATRFADANSMPLFETSAKADSEMGNIEAIFLTVAHKL 182          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: YPTC1_CHLRE (GTP-binding protein YPTC1 OS=Chlamydomonas reinhardtii GN=YPTC1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 56/183 (30.60%), Postives = 92/183 (50.27%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR-VCENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLA----RKLAGDPNLHFVESPALAPPE 610
            FKL+++GD G GK+  + R     + + Y  TIGV+        +   I+   WDTAGQE+F  +   YY      I+++DVT + ++ NV  W  ++ R   EN+  +L GNK D+ +++V    V   F  +  + + E SAK+  N E+ F+ +A     ++A  P       P + P E
Sbjct:    9 FKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTVELDGKVIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTDQESFNNVKQWLNEIDRYASENVNKLLVGNKSDLTSKKVVEYSVAKAFADEIGIPFLETSAKNATNVEQAFMTMAAEIKNRMASQPIPTKAGGPVVRPQE 191          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RB27B_MOUSE (Ras-related protein Rab-27B OS=Mus musculus GN=Rab27b PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 1.903e-17
Identity = 54/162 (33.33%), Postives = 82/162 (50.62%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCG----------KIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL--CRVCENIPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEK 529
            KL+ +GD G GKTTF+ R+   +F  K+  T+G++        +            K+    WDTAGQE+F  L   ++      ++MFD+T++ ++ NV  W   L     CEN  IVL GNK D+ + R+V  +Q      K  + Y+E SA +  N EK
Sbjct:   11 KLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYDTQGADGASGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQREVNERQARELAEKYGIPYFETSAATGQNVEK 172          
The following BLAST results are available for this feature:
BLAST of DC900183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB14_MOUSE1.115e-1734.36Ras-related protein Rab-14 OS=Mus musculus GN=Rab1... [more]
RAB14_HUMAN1.115e-1734.36Ras-related protein Rab-14 OS=Homo sapiens GN=RAB1... [more]
RAB14_CHICK1.115e-1734.36Ras-related protein Rab-14 OS=Gallus gallus GN=RAB... [more]
YPT7_SCHPO1.457e-1728.66GTP-binding protein ypt7 OS=Schizosaccharomyces po... [more]
RB11D_LOTJA1.457e-1732.47Ras-related protein Rab11D OS=Lotus japonicus GN=R... [more]
RAB43_MOUSE1.457e-1736.20Ras-related protein Rab-43 OS=Mus musculus GN=Rab4... [more]
RAB3_DROME1.457e-1729.94Ras-related protein Rab-3 OS=Drosophila melanogast... [more]
RAB33_CIOIN1.457e-1734.13Putative Ras-related protein Rab-33 OS=Ciona intes... [more]
YPTC1_CHLRE1.903e-1730.60GTP-binding protein YPTC1 OS=Chlamydomonas reinhar... [more]
RB27B_MOUSE1.903e-1733.33Ras-related protein Rab-27B OS=Mus musculus GN=Rab... [more]

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Properties
Property NameValue
Genbank descriptionDC900183 VSS Citrus sinensis cDNA clone VS28210 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900183 ID=DC900183; Name=DC900183; organism=Citrus sinensis; type=EST; length=672bp
CAGACCGCGAACTTCGTATTCTTTCGCACACAGTACTCAACTCATGGCTC
TGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTC
GGCGACGGTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGG
GGAGTTTGAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGT
TGGATTTCTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACT
GCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGG
GCAATGTGCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGA
ATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCG
ATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGC
AAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTT
CTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGG
AAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGC
TCCTCCAGAAGTACAGATTGACTTAGCTGACAGCAACACATGAAGCCGAG
CTTGCCGANCAGCTAGCCAGCC
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