DC900183

Overview
NameDC900183
Unique NameDC900183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RB27A_PIG (Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 47/159 (29.56%), Postives = 79/159 (49.69%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH----------PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW--HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYN 520
            K + +GD G GKT+ + ++  G+F  K+  T+G++            P        +I    WDTAGQE+F  L   ++      +++FD+T   ++ NV  W     +   CEN  IVLCGNK D+++++V  ++       K  + Y+E SA +  N
Sbjct:   11 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIVLCGNKSDLEDQRVVKEEEARGLAEKYGIPYFETSAANGTN 169          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RB27A_CANFA (Ras-related protein Rab-27A OS=Canis familiaris GN=RAB27A PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 47/162 (29.01%), Postives = 80/162 (49.38%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVH----------PLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTW--HRDLCRVCENIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEK 529
            K + +GD G GKT+ + ++  G+F  K+  T+G++            P        +I    WDTAGQE+F  L   ++      +++FD+T   ++ NV  W     +   CEN  IVLCGNK D+++++V  ++       K  + Y+E SA +  N  +
Sbjct:   11 KFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAIGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIVLCGNKSDLEDQRVVKEEDARGLAEKYGIPYFETSAANGTNISQ 172          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAP1B_XENTR (Ras-related protein Rap-1b OS=Xenopus tropicalis GN=rap1b PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 50/163 (30.67%), Postives = 88/163 (53.99%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            +KLV++G GG GK+    + + G F +KY+PTI  + +      +  +      DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++ +V  K   Q    +  N  + E SAKS  N  + F  L R++
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAP1B_XENLA (Ras-related protein Rap-1b OS=Xenopus laevis GN=rap1b PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 50/163 (30.67%), Postives = 88/163 (53.99%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAK---QVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            +KLV++G GG GK+    + + G F +KY+PTI  + +      +  +      DTAG E+F  +RD Y  +GQ   +++ +TA+ T+ ++      + RV   +++P++L GNK D+++ +V  K   Q    +  N  + E SAKS  N  + F  L R++
Sbjct:    4 YKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI-EDSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNNCAFLESSAKSKINVNEIFYDLVRQI 165          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RALA_HUMAN (Ras-related protein Ral-A OS=Homo sapiens GN=RALA PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 49/161 (30.43%), Postives = 87/161 (54.04%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 556
            K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  + +F +T   ++     +   + RV   EN+P +L GNK D+++ RQV  ++     ++ N+ Y E SAK+  N +K F  L R++
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDKVFFDLMREI 175          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB8B_DICDI (Ras-related protein Rab-8B OS=Dictyostelium discoideum GN=rab8B PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 44/160 (27.50%), Postives = 86/160 (53.75%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDL-CRVCENIPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            KL+++GD G GK+  + R   G F   +  TIG++           +I+   WDTAGQE+F  +   YY      ++++DVT   ++ ++  W R++     +++  +L GNK D+  ++V   ++  +   +  +++ E SAK++ N E+ F+ LA+ +
Sbjct:   17 KLLLIGDSGVGKSCLLLRFSDGSFTPSFIATIGIDFKIRTIELEGKRIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFGSIRNWIRNIEQHASDSVNKMLIGNKCDMTEKKVVDSSRGKSLADEYGIKFLETSAKNSVNVEEAFIGLAKDI 176          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB4A_ECHMU (Probable Ras-related protein Rab-4A OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 47/162 (29.01%), Postives = 81/162 (50.00%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKA---KQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FK +I+G+ GTGKT  ++R+   +F    + TIG E        +   ++   WDTAGQE+F  +   YY      ++++D+T R ++  V  W  D   +    + ++L GNK D+++   +    +  TF ++  LQ+ E SA +  N +  F    R L
Sbjct:   10 FKFLIIGNAGTGKTCILRRYTERKFFPNTQHTIGAEFGSRVISVDGTHVKIQIWDTAGQERFRSMARSYYHDAVGTLLVYDITNRTSFGAVEQWLGDARHLATPGVVVILVGNKKDLRDTDGQVTHWEANTFAQENGLQFIETSALTGENIDDAFTSCVRVL 171          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB21_GEOCY (Ras-related protein Rab-21 OS=Geodia cydonium GN=RAB21 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 3.038e-15
Identity = 53/180 (29.44%), Postives = 91/180 (50.56%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESPALAPPEVQ 616
            K+V++G+G  GKT+ V R+   +F  K+E T+              +I+   WDTAGQE++  L   YY   Q AII++D+T   ++     W ++L R+  + + + + GNK+D+ + R V  K  + +      ++Y  SAK +    + FL LA+++     L      +  PPE Q
Sbjct:   18 KVVLLGEGAVGKTSLVLRYSENKFNDKHEQTLQASFVEKRLNIGGKRIQLAIWDTAGQERYHALGPIYYRDSQGAIIVYDITDEDSFHKARNWIKELKRMLGDKVTLCIVGNKIDLDRQRTVSEKDALEYAESVGAKHYYTSAKQSKGVAELFLDLAKRI-----LEANPPSSSTPPESQ 192          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: YPTM1_MAIZE (GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 48/158 (30.38%), Postives = 81/158 (51.27%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLA 547
            FKL+++GD   GK+ F+ R     +   Y  TIGV+            ++   WDTAGQE+F  +   YY      II++D+T   ++ NV  W  ++ R   +++  +L GNK D+ +NR V       + ++  + + E SAK + N E+ FL ++
Sbjct:    9 FKLLLIGDSSVGKSCFLLRFADDSYVDSYISTIGVDFKIRTVEVEGKTVKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDITDMESFNNVKQWLDEIDRYANDSVRKLLVGNKCDLAENRAVDTSVAQAYAQEVGIPFLETSAKESINVEEAFLAMS 166          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RHOD_HUMAN (Rho-related GTP-binding protein RhoD OS=Homo sapiens GN=RHOD PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 3.967e-15
Identity = 50/168 (29.76%), Postives = 85/168 (50.60%), Query Frame = 2
Query:   80 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNV-PTWHRDLCRVCENIPIVLCGNKVDV--------KNRQVKAKQVTFHRKKNL-------QYYEISAKSNYNFEKPF 535
            S K+V+VGDGG GKT+ +     G F + Y PT+  E + ++       +  + WDTAGQ+ +  LR  +Y      ++ FDVT+  ++ N+   W+ ++   C+ +PI++ G K D+        K R+   + VT+HR + +        Y E SA+ + N    F
Sbjct:   17 SVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTV-FERYMVNLQVKGKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLCKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAYLECSARLHDNVHAVF 183          
The following BLAST results are available for this feature:
BLAST of DC900183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RB27A_PIG3.038e-1529.56Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27... [more]
RB27A_CANFA3.038e-1529.01Ras-related protein Rab-27A OS=Canis familiaris GN... [more]
RAP1B_XENTR3.038e-1530.67Ras-related protein Rap-1b OS=Xenopus tropicalis G... [more]
RAP1B_XENLA3.038e-1530.67Ras-related protein Rap-1b OS=Xenopus laevis GN=ra... [more]
RALA_HUMAN3.038e-1530.43Ras-related protein Ral-A OS=Homo sapiens GN=RALA ... [more]
RAB8B_DICDI3.038e-1527.50Ras-related protein Rab-8B OS=Dictyostelium discoi... [more]
RAB4A_ECHMU3.038e-1529.01Probable Ras-related protein Rab-4A OS=Echinococcu... [more]
RAB21_GEOCY3.038e-1529.44Ras-related protein Rab-21 OS=Geodia cydonium GN=R... [more]
YPTM1_MAIZE3.967e-1530.38GTP-binding protein YPTM1 OS=Zea mays GN=YPTM1 PE=... [more]
RHOD_HUMAN3.967e-1529.76Rho-related GTP-binding protein RhoD OS=Homo sapie... [more]

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Properties
Property NameValue
Genbank descriptionDC900183 VSS Citrus sinensis cDNA clone VS28210 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900183 ID=DC900183; Name=DC900183; organism=Citrus sinensis; type=EST; length=672bp
CAGACCGCGAACTTCGTATTCTTTCGCACACAGTACTCAACTCATGGCTC
TGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTC
GGCGACGGTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGG
GGAGTTTGAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGT
TGGATTTCTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACT
GCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGG
GCAATGTGCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGA
ATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCG
ATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGC
AAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTT
CTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGG
AAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGC
TCCTCCAGAAGTACAGATTGACTTAGCTGACAGCAACACATGAAGCCGAG
CTTGCCGANCAGCTAGCCAGCC
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