DC900183

Overview
NameDC900183
Unique NameDC900183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RABG2_DICDI (Ras-related protein RabG2 OS=Dictyostelium discoideum GN=rabG2 PE=3 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 1.969e-14
Identity = 43/161 (26.71%), Postives = 80/161 (49.69%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            FK++++GD   GKT+ + R     F++       V+    +   +        WDTAGQE+F  +   +Y      ++ +DVT +LTY NV  W +++ R     +  VL GNK D+++R++    +   +     + + E SA +  N E+ F+ +A ++
Sbjct:    7 FKILLIGDSAVGKTSLLLRFADNSFQETSVNMTSVDYKNKNIVIDGRTFNLQIWDTAGQERFRTITSSFYRGAHGVLVCYDVTDQLTYNNVRLWMQEIQRYAVLGVSRVLVGNKCDLEDRKLVNTSIAREYADSLGIPFMEASAATGVNVEEAFMAMANEI 167          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RASM_HUMAN (Ras-related protein M-Ras OS=Homo sapiens GN=MRAS PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 58/174 (33.33%), Postives = 91/174 (52.30%), Query Frame = 2
Query:   44 MALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 550
            MA  +  + + P++KLV+VGDGG GK+    +     F   Y+PTI           N   I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P++L  NKVD+ + R++  +Q      K N+ Y E SAK    N +K F  L R
Sbjct:    1 MATSAVPSDNLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKITREQGKEMATKHNIPYIETSAKDPPLNVDKAFHDLVR 173          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RABD1_ARATH (Ras-related protein RABD1 OS=Arabidopsis thaliana GN=RABD1 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 51/177 (28.81%), Postives = 84/177 (47.46%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC-ENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLA----RKLAGDPNLHFVESP 592
            FKL+++GD   GK+  + R     +   Y  TIGV+        +   I+   WDTAGQE+F  +   YY      II++D T   ++ NV  W  ++ R   E++  +L GNK D+   +V + +       +  + + E SAK + N E+ FL +A    +K+    N +    P
Sbjct:    9 FKLLLIGDSSVGKSCLLLRFADDAYIDSYISTIGVDFKIRTIEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDCTEMESFNNVKQWLSEIDRYANESVCKLLIGNKNDMVESKVVSTETGRALADELGIPFLETSAKDSINVEQAFLTIAGEIKKKMGSQTNANKTSGP 185          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB33_CAEEL (Ras-related protein Rab-33 OS=Caenorhabditis elegans GN=rab-33 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 60/195 (30.77%), Postives = 89/195 (45.64%), Query Frame = 2
Query:   44 MALPSQQTVDYP---SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKF-GGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--------NIPIVLCGNKVDVK--NRQVKAKQVTFHRKKNLQYYEISAK---SNYNFEKPFLYLARKLAGDPNLH 577
            MAL    T  Y    +FK++IVG+   GKT    R   G F +  E TIGV+            +R   WDTAGQE++   +   YY +    + ++DVT R ++ ++  W ++    CE         +P +L GNK DV+  NR    +   F  + N+  +E SAK      + E  FL L  KL     +H
Sbjct:   85 MALAPSSTKTYKQKRTFKVIIVGNAAVGKTCLSFRFCCGRFPEHTEATIGVDFRERSCVIENELLRVQLWDTAGQERYRQSIVAHYYRNVNAVVFVYDVTCRESFNDLALWIKE----CEKHGLVGDSEVPRILIGNKCDVECTNRVSTDEAQMFADRNNMALFETSAKLASEADHVESIFLTLLHKLQQSKPMH 275          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB1C_DICDI (Ras-related protein Rab-1C OS=Dictyostelium discoideum GN=Rab1C PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 51/186 (27.42%), Postives = 91/186 (48.92%), Query Frame = 2
Query:   11 TSYSFAHSTQLMALPSQQTVDYPSF----KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE-NIPIVLCGNKVDVKNRQVKAKQVT--FHRKKNLQYYEISAKSNYNFEKPFLYLA 547
            TS SF H ++           +P +    K++++GD G GK+  + R     F   Y  TIGV+        +  KI+   WDTAGQE+F  +   YY      II++D+T+  ++ ++  W  D+ R    ++  ++ GNK D+ +++    ++   F  + N+   E SAK +   ++ F+ LA
Sbjct:   16 TSTSFIHGSE----------SHPEYDMLLKILVIGDSGVGKSCMLLRFADNRFTDSYISTIGVDFCIRTIELDGKKIKLQIWDTAGQERFKTITTSYYRGAHGLIIVYDITSMDSFNSIKRWLIDVDRFASPSVLKLIVGNKCDLNSKRAVDFKIAKKFADELNIPIMETSAKESTAIDEAFIKLA 191          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB17_HUMAN (Ras-related protein Rab-17 OS=Homo sapiens GN=RAB17 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 56/186 (30.11%), Postives = 91/186 (48.92%), Query Frame = 2
Query:   26 AHST-QLMALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKNRQVKAKQVTFHRKK------NLQYYEISAKSNYNFEKPFLYLARKL 556
            AH T Q  A PSQ  V    FKLV++G G  GK++   R++  +F K   PT+G              ++   WDTAGQEK+  +   Y+     A++++D+T + ++     W +DL        + ++L GNK D+     + ++VTF   K       L + E SAK N+   + F  +A++L
Sbjct:    4 AHRTPQPRAAPSQPRV----FKLVLLGSGSVGKSSLALRYVKNDF-KSILPTVGCAFFTKVVDVGATSLKLEIWDTAGQEKYHSVCHLYFRGANAALLVYDITRKDSFLKAQQWLKDLEEELHPGEVLVMLVGNKTDLS----QEREVTFQEGKEFADSQKLLFMETSAKLNHQVSEVFNTVAQEL 180          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: LET60_CAEEL (Ras protein let-60 OS=Caenorhabditis elegans GN=let-60 PE=1 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.571e-14
Identity = 50/173 (28.90%), Postives = 88/173 (50.87%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQVTFHRK-KNLQYYEISAKSNYNFEKPFLYLARKLAGDPNLHFVESP 592
            +KLV+VGDGG GK+    + +   F ++Y+PTI  + +      +         DTAGQE++  +RD Y   G+  +++F V    +++NV  +   + RV   +++P+VL GNK D+ +R V  + V+   K   +   + SAK+    ++ F  L R++      H    P
Sbjct:    4 YKLVVVGDGGVGKSALTIQLIQNHFVEEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLLVFAVNEAKSFENVANYREQIRRVKDSDDVPMVLVGNKCDLSSRSVDFRTVSETAKGYGIPNVDTSAKTRMGVDEAFYTLVREIRKHRERHDNNKP 175          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RASM_MOUSE (Ras-related protein M-Ras OS=Mus musculus GN=Mras PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 60/173 (34.68%), Postives = 91/173 (52.60%), Query Frame = 2
Query:   47 ALPSQQTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKN-RQVKAKQ-VTFHRKKNLQYYEISAKS-NYNFEKPFLYLAR 550
            A+PS+   + P++KLV+VGDGG GK+    +     F   Y+PTI           N   I     DTAGQE+F  +R+ Y   G   +I++ VT + ++++V  +H+ + RV   E+ P++L  NKVD+ + R+V   Q      K N+ Y E SAK    N +K F  L R
Sbjct:    5 AVPSE---NLPTYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHTEIDNQWAI-LDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVDKTFHDLVR 173          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RASEF_XENTR (RAS and EF-hand domain-containing protein OS=Xenopus tropicalis GN=rasef PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 51/171 (29.82%), Postives = 81/171 (47.37%), Query Frame = 2
Query:   80 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCR--VCENIPIVLCGNKVDVKNRQVKAKQ----------VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            ++K+V+ GD   GK++F+ R    EF      T+GV+        +        WDTAGQE+F  +   Y+      ++++DVT   ++ NV  W  D+      E IPI++ GNK D+  RQ+ A+Q              R     + E SAK   N  +  L+LAR++
Sbjct:  522 AYKIVLAGDAAVGKSSFLMRLCKNEFRGNTSATLGVDFQMKTLVVDGEPTILQLWDTAGQERFRSIAKSYFRRADGVLLLYDVTCEKSFLNVREW-IDMIEDATSEAIPIMMVGNKADL--RQLMAEQGHICVSTNYGEKLSRTYGALFCETSAKEGSNIVEAVLHLAREV 689          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAS3_DROME (Ras-like protein 3 OS=Drosophila melanogaster GN=R PE=2 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 3.358e-14
Identity = 47/162 (29.01%), Postives = 87/162 (53.70%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV--TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            +K+V++G GG GK+    + +   F +KY+PTI  + +      +  +      DTAG E+F  +RD Y  +GQ  ++++ +TA+ T+ ++      + RV   +++P+VL GNK D++  +V  K++      + N  + E SAK+  N    F  L R++
Sbjct:    4 YKIVVLGSGGVGKSALTVQFVQCIFVEKYDPTIE-DSYRKQVEVDGQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITAQSTFNDLQDLREQILRVKDTDDVPMVLVGNKCDLEEERVVGKELGKNLATQFNCAFMETSAKAKVNVNDIFYDLVRQI 164          
The following BLAST results are available for this feature:
BLAST of DC900183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RABG2_DICDI1.969e-1426.71Ras-related protein RabG2 OS=Dictyostelium discoid... [more]
RASM_HUMAN2.571e-1433.33Ras-related protein M-Ras OS=Homo sapiens GN=MRAS ... [more]
RABD1_ARATH2.571e-1428.81Ras-related protein RABD1 OS=Arabidopsis thaliana ... [more]
RAB33_CAEEL2.571e-1430.77Ras-related protein Rab-33 OS=Caenorhabditis elega... [more]
RAB1C_DICDI2.571e-1427.42Ras-related protein Rab-1C OS=Dictyostelium discoi... [more]
RAB17_HUMAN2.571e-1430.11Ras-related protein Rab-17 OS=Homo sapiens GN=RAB1... [more]
LET60_CAEEL2.571e-1428.90Ras protein let-60 OS=Caenorhabditis elegans GN=le... [more]
RASM_MOUSE3.358e-1434.68Ras-related protein M-Ras OS=Mus musculus GN=Mras ... [more]
RASEF_XENTR3.358e-1429.82RAS and EF-hand domain-containing protein OS=Xenop... [more]
RAS3_DROME3.358e-1429.01Ras-like protein 3 OS=Drosophila melanogaster GN=R... [more]

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Properties
Property NameValue
Genbank descriptionDC900183 VSS Citrus sinensis cDNA clone VS28210 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900183 ID=DC900183; Name=DC900183; organism=Citrus sinensis; type=EST; length=672bp
CAGACCGCGAACTTCGTATTCTTTCGCACACAGTACTCAACTCATGGCTC
TGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTC
GGCGACGGTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGG
GGAGTTTGAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGT
TGGATTTCTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACT
GCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGG
GCAATGTGCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGA
ATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCG
ATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGC
AAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTT
CTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGG
AAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGC
TCCTCCAGAAGTACAGATTGACTTAGCTGACAGCAACACATGAAGCCGAG
CTTGCCGANCAGCTAGCCAGCC
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