DC900183

Overview
NameDC900183
Unique NameDC900183
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length672
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8429 contig Csv1_Contig8429:927..1598. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB21_DICDI (Ras-related protein Rab-21 OS=Dictyostelium discoideum GN=rab21 PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 7.482e-14
Identity = 50/162 (30.86%), Postives = 81/162 (50.00%), Query Frame = 2
Query:   80 SFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCEN-IPIVLCGNKVDVKNRQV--KAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            SFK+V++G+G  GKT+ V R++   F  K+  T               +I    WDTAGQE+F  L   YY   Q A++++D+T   ++     W ++L  +  N I + + GNK D++  +V   A    + +     +Y  SAK N   E+ FL L R++
Sbjct:    7 SFKVVLLGEGCVGKTSIVFRYIDNIFNDKHLMTQHAGFFQKHINIGGKRICLTIWDTAGQERFHALGPIYYRGSQGALVVYDITDNDSFIKAKNWIKELKTMLGNDISLCIIGNKCDLEKTRVIPLADAEAYAKSVGAIHYSTSAKLNKGIEELFLDLTRRM 168          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RB39A_HUMAN (Ras-related protein Rab-39A OS=Homo sapiens GN=RAB39 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 52/174 (29.89%), Postives = 84/174 (48.28%), Query Frame = 2
Query:   62 QTVDYPSFKLVIVGDGGTGKTTFVKRHLTGEF----EKKYEPTIGVEVHPLDFFTNCGK-IRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCENIPIV--LCGNKVDV-KNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            +T+    F+L+++GD   GK+  + R   G F        +PT+GV+          GK I+   WDTAGQE+F  +   YY +     ++FD+T R ++++V  W  +     +   IV  L G+K D+   RQV  ++         ++Y E SAK   N E+ F  L R +
Sbjct:    2 ETIWIYQFRLIVIGDSTVGKSCLLHRFTQGRFPGLRSPACDPTVGVDFFSRLLEIEPGKRIKLQLWDTAGQERFRSITRSYYRNSVGGFLVFDITNRRSFEHVKDWLEEAKMYVQPFRIVFLLVGHKCDLASQRQVTREEAEKLSADCGMKYIETSAKDATNVEESFTILTRDI 175          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAS_CARAU (Ras-like protein (Fragment) OS=Carassius auratus PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 48/161 (29.81%), Postives = 82/161 (50.93%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + + E SAK+    E  F  L R++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRSVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAS1_PHYPO (Ras-like protein 1 OS=Physarum polycephalum GN=RAS1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 50/165 (30.30%), Postives = 85/165 (51.52%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVK-NRQVKAKQ-VTFHRKKNLQYYEISAKSNYNFEKPFLYLARKLAGD 565
            +KLVIVG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   GQ  + ++ +T+R ++  + ++   + RV   + +P+++ GNK D++  RQV   +     R     + E SAKS  N E+ F  L R++  D
Sbjct:    4 YKLVIVGGGGVGKSALTIQLIQNHFIDEYDPTIE-DSYRKQVTIDEETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITSRSSFDEIASFREQILRVKDKDKVPMIVVGNKCDLEGERQVTTGEGQDLARSFGCPFMETSAKSRVNVEESFYQLVREIRKD 167          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RALBB_XENLA (Ras-related protein ralB-B OS=Xenopus laevis GN=ralb-B PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 47/162 (29.01%), Postives = 87/162 (53.70%), Query Frame = 2
Query:   86 KLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVC---ENIPIVLCGNKVDVKN-RQVKAKQVTFHRKK-NLQYYEISAKSNYNFEKPFLYLARKL 556
            K+++VG GG GK+    + +  EF + YEPT   + +      +  +++    DTAGQE +  +RD Y+  G+  +++F +T   ++     +   + RV    + IP+++ GNK D+++ RQV   +     ++  +QY E SAK+  N +K F  L R++
Sbjct:   16 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPT-KADSYRKKVVLDGEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEDRRQVPMDEARGKAEEWGVQYVETSAKTRANVDKVFFDLMREV 176          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RAB36_HUMAN (Ras-related protein Rab-36 OS=Homo sapiens GN=RAB36 PE=1 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.772e-14
Identity = 55/167 (32.93%), Postives = 78/167 (46.71%), Query Frame = 2
Query:   65 TVDYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRVCE--NIPIVLCGNKVDVKN----RQVKAKQVTFHRKKNLQYYEISAKSNYNFEKPFLYLA 547
            TV     K+V+VGD   GKT+ + R     F++ Y+ TIGV+     F           WDTAGQEKF  +   YY   Q  I  FD+T   T ++   W  D  R  E  +  I L G K D+ +     Q +A  V   R+   +Y+ +SAK+  N +  F  +A
Sbjct:  118 TVGLKLSKVVVVGDLYVGKTSLIHRFCKNVFDRDYKATIGVDFEIERFEIAGIPYSLQIWDTAGQEKFKCIASAYYRGAQVIITAFDLTDVQTLEHTRQWLEDALRENEAGSCFIFLVGTKKDLLSGAACEQAEADAVHLAREMQAEYWSVSAKTGENVKAFFSRVA 284          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RASK_RAT (GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 48/161 (29.81%), Postives = 82/161 (50.93%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + + E SAK+    E  F  L R++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RASK_MOUSE (GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 48/161 (29.81%), Postives = 82/161 (50.93%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + + E SAK+    E  F  L R++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQELARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RASK_HUMAN (GTPase KRas OS=Homo sapiens GN=KRAS PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 48/161 (29.81%), Postives = 82/161 (50.93%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            +KLV+VG GG GK+    + +   F  +Y+PTI  + +      +         DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   E++P+VL GNK D+ +R V  KQ     R   + + E SAK+    E  F  L R++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI-EDSYRKQVVIDGETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPSRTVDTKQAQDLARSYGIPFIETSAKTRQRVEDAFYTLVREI 163          
BLAST of DC900183 vs. ExPASy Swiss-Prot
Match: RASH_MOUSE (GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.276e-13
Identity = 48/161 (29.81%), Postives = 82/161 (50.93%), Query Frame = 2
Query:   83 FKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTARLTYKNVPTWHRDLCRV--CENIPIVLCGNKVDVKNRQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKPFLYLARKL 556
            +KLV+VG GG GK+    + +   F  +Y+PTI               +  Y  DTAGQE++  +RD Y   G+  + +F +    +++++  +   + RV   +++P+VL GNK D+  R V+++Q     R   + Y E SAK+    E  F  L R++
Sbjct:    4 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDYL-DTAGQEEYSAMRDQYMRTGEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKCDLAARTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVREI 163          
The following BLAST results are available for this feature:
BLAST of DC900183 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB21_DICDI7.482e-1430.86Ras-related protein Rab-21 OS=Dictyostelium discoi... [more]
RB39A_HUMAN9.772e-1429.89Ras-related protein Rab-39A OS=Homo sapiens GN=RAB... [more]
RAS_CARAU9.772e-1429.81Ras-like protein (Fragment) OS=Carassius auratus P... [more]
RAS1_PHYPO9.772e-1430.30Ras-like protein 1 OS=Physarum polycephalum GN=RAS... [more]
RALBB_XENLA9.772e-1429.01Ras-related protein ralB-B OS=Xenopus laevis GN=ra... [more]
RAB36_HUMAN9.772e-1432.93Ras-related protein Rab-36 OS=Homo sapiens GN=RAB3... [more]
RASK_RAT1.276e-1329.81GTPase KRas OS=Rattus norvegicus GN=Kras PE=1 SV=3[more]
RASK_MOUSE1.276e-1329.81GTPase KRas OS=Mus musculus GN=Kras PE=1 SV=1[more]
RASK_HUMAN1.276e-1329.81GTPase KRas OS=Homo sapiens GN=KRAS PE=1 SV=1[more]
RASH_MOUSE1.276e-1329.81GTPase HRas OS=Mus musculus GN=Hras1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionDC900183 VSS Citrus sinensis cDNA clone VS28210 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900183 ID=DC900183; Name=DC900183; organism=Citrus sinensis; type=EST; length=672bp
CAGACCGCGAACTTCGTATTCTTTCGCACACAGTACTCAACTCATGGCTC
TGCCAAGTCAGCAAACTGTTGATTACCCGAGCTTCAAACTCGTCATAGTC
GGCGACGGTGGCACTGGGAAGACTACCTTTGTGAAGAGGCATCTGACTGG
GGAGTTTGAGAAGAAGTATGAACCAACTATTGGTGTGGAGGTTCATCCGT
TGGATTTCTTTACAAATTGTGGCAAAATCCGTTTCTACTGCTGGGACACT
GCTGGCCAGGAAAAGTTTGGTGGTCTTAGAGATGGTTATTACATCCATGG
GCAATGTGCCATCATTATGTTTGATGTTACTGCCCGATTGACATACAAGA
ATGTTCCCACTTGGCACCGTGATCTTTGCCGGGTGTGTGAAAATATACCG
ATTGTTCTCTGTGGGAACAAGGTTGATGTGAAGAATAGGCAAGTCAAGGC
AAAGCAGGTTACCTTCCACAGGAAGAAGAATCTACAGTACTATGAGATTT
CTGCCAAGAGCAACTACAATTTTGAGAAACCTTTCTTGTACCTTGCCAGG
AAGCTTGCTGGGGACCCAAATTTGCACTTCGTGGAATCTCCTGCTCTCGC
TCCTCCAGAAGTACAGATTGACTTAGCTGACAGCAACACATGAAGCCGAG
CTTGCCGANCAGCTAGCCAGCC
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