DC900180 | Citrus Genome Database

Overview


Name	DC900180
Unique Name	DC900180
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	596

Libraries


Library Name	Type
VSS	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig1582	contig	Csv1_Contig1582:410..1005.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of DC900180 vs. ExPASy Swiss-Prot
Match: 14337_ORYSJ (14-3-3-like protein GF14-G OS=Oryza sativa subsp. japonica GN=GF14G PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.044e-42
Identity = 84/136 (61.76%), Postives = 104/136 (76.47%), Query Frame = 2

Query:    2 EHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGGE 409
            ++LIP S+  ES+VFYYKMKGDYYRYLAEFK   ++ E ++ SL           ++L PT PIRLGLALN SVFY EI+NSP++AC LAK AFDEA+AEL SL+EE+YKDSTLIMQLLRDNL LW SD+ ++  +
Sbjct:  106 KYLIPHSSGAESSVFYYKMKGDYYRYLAEFKTGTEKIEVSELSLNAYETASKTAQTDLTPTDPIRLGLALNISVFYCEIMNSPDKACQLAKNAFDEAVAELPSLSEENYKDSTLIMQLLRDNLALWNSDMADDADD 241

[Close]

BLAST of DC900180 vs. ExPASy Swiss-Prot
Match: 14333_ENTHI (14-3-3 protein 3 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 172.555 bits (436), Expect = 1.363e-42
Identity = 84/133 (63.16%), Postives = 103/133 (77.44%), Query Frame = 2

Query:    2 EHLIPSSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEE 400
            E+L+P++++ ES VFY KM+GDYYRY AEF   + R+E AD SL           ++L PTHPIRLGLALNFSVFYYEI+N  ++AC LAKQAFD++IA+LD + E SYKDSTLIMQLLRDNLTLWTSD  +E
Sbjct:  103 ENLLPNASTSESKVFYKKMEGDYYRYYAEFTVDEKRQEVADKSLAAYTEATEISNADLAPTHPIRLGLALNFSVFYYEIMNDADKACQLAKQAFDDSIAKLDEVPESSYKDSTLIMQLLRDNLTLWTSDTADE 235

[Close]

BLAST of DC900180 vs. ExPASy Swiss-Prot
Match: 143GB_XENLA (14-3-3 protein gamma-B OS=Xenopus laevis GN=ywhag-B PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.179e-42
Identity = 85/130 (65.38%), Postives = 96/130 (73.85%), Query Frame = 2

Query:   17 SSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGG 406
            S T  ES VFY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AIAELD+LNE+SYKDSTLIMQLLRDNLTLWTSD  ++ G
Sbjct:  113 SETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDG 242

[Close]

BLAST of DC900180 vs. ExPASy Swiss-Prot
Match: 143GA_XENLA (14-3-3 protein gamma-A OS=Xenopus laevis GN=ywhag-A PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.179e-42
Identity = 85/130 (65.38%), Postives = 96/130 (73.85%), Query Frame = 2

Query:   17 SSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGG 406
            S T  ES VFY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AIAELD+LNE+SYKDSTLIMQLLRDNLTLWTSD  ++ G
Sbjct:  113 SETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDG 242

[Close]

BLAST of DC900180 vs. ExPASy Swiss-Prot
Match: 143G2_ONCMY (14-3-3 protein gamma-2 OS=Oncorhynchus mykiss PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.179e-42
Identity = 87/135 (64.44%), Postives = 100/135 (74.07%), Query Frame = 2

Query:   17 SSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSD-LPEEGGEQSK 418
            + T  ES VFY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AIAELD+LNE+SY+DSTLIMQLLRDNLTLWTSD   +EGGE +K
Sbjct:  113 NETQHESKVFYLKMKGDYYRYLAEVATGEKRATVIESSEKAYNEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYQDSTLIMQLLRDNLTLWTSDQQDDEGGEGNK 247

[Close]

BLAST of DC900180 vs. ExPASy Swiss-Prot
Match: 143G1_DANRE (14-3-3 protein gamma-1 OS=Danio rerio GN=ywhag1 PE=2 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 5.179e-42
Identity = 87/130 (66.92%), Postives = 97/130 (74.62%), Query Frame = 2

Query:   23 TSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSD-LPEEGGE 409
            T  ES VFY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AIAELD+LNE+SYKDSTLIMQLLRDNLTLWTSD   +EGGE
Sbjct:  115 TQHESKVFYLKMKGDYYRYLAEVATGEKRAAVVESSEKSYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDEGGE 244

[Close]

BLAST of DC900180 vs. ExPASy Swiss-Prot
Match: 1433G_RAT (14-3-3 protein gamma OS=Rattus norvegicus GN=Ywhag PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.179e-42
Identity = 85/130 (65.38%), Postives = 96/130 (73.85%), Query Frame = 2

Query:   17 SSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGG 406
            S T  ES VFY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AIAELD+LNE+SYKDSTLIMQLLRDNLTLWTSD  ++ G
Sbjct:  113 SETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDG 242

[Close]

BLAST of DC900180 vs. ExPASy Swiss-Prot
Match: 1433G_PONAB (14-3-3 protein gamma OS=Pongo abelii GN=YWHAG PE=2 SV=3)

HSP 1 Score: 170.629 bits (431), Expect = 5.179e-42
Identity = 85/130 (65.38%), Postives = 96/130 (73.85%), Query Frame = 2

Query:   17 SSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGG 406
            S T  ES VFY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AIAELD+LNE+SYKDSTLIMQLLRDNLTLWTSD  ++ G
Sbjct:  113 SETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDG 242

[Close]

BLAST of DC900180 vs. ExPASy Swiss-Prot
Match: 1433G_MOUSE (14-3-3 protein gamma OS=Mus musculus GN=Ywhag PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.179e-42
Identity = 85/130 (65.38%), Postives = 96/130 (73.85%), Query Frame = 2

Query:   17 SSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGG 406
            S T  ES VFY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AIAELD+LNE+SYKDSTLIMQLLRDNLTLWTSD  ++ G
Sbjct:  113 SETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDG 242

[Close]

BLAST of DC900180 vs. ExPASy Swiss-Prot
Match: 1433G_HUMAN (14-3-3 protein gamma OS=Homo sapiens GN=YWHAG PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 5.179e-42
Identity = 85/130 (65.38%), Postives = 96/130 (73.85%), Query Frame = 2

Query:   17 SSTSGESTVFYYKMKGDYYRYLAEFKGADDRKEAADHSLKXXXXXXXXXXSELPPTHPIRLGLALNFSVFYYEILNSPERACHLAKQAFDEAIAELDSLNEESYKDSTLIMQLLRDNLTLWTSDLPEEGG 406
            S T  ES VFY KMKGDYYRYLAE    + R    + S K            + PTHPIRLGLALN+SVFYYEI N+PE+ACHLAK AFD+AIAELD+LNE+SYKDSTLIMQLLRDNLTLWTSD  ++ G
Sbjct:  113 SETQYESKVFYLKMKGDYYRYLAEVATGEKRATVVESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIQNAPEQACHLAKTAFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDG 242

The following BLAST results are available for this feature:

BLAST of DC900180 vs. ExPASy Swiss-Prot

BLAST of DC900180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143


Match Name	E-value	Identity	Description
14337_ORYSJ	1.044e-42	61.76	14-3-3-like protein GF14-G OS=Oryza sativa subsp. ...	[more]
14333_ENTHI	1.363e-42	63.16	14-3-3 protein 3 (Fragment) OS=Entamoeba histolyti...	[more]
143GB_XENLA	5.179e-42	65.38	14-3-3 protein gamma-B OS=Xenopus laevis GN=ywhag-...	[more]
143GA_XENLA	5.179e-42	65.38	14-3-3 protein gamma-A OS=Xenopus laevis GN=ywhag-...	[more]
143G2_ONCMY	5.179e-42	64.44	14-3-3 protein gamma-2 OS=Oncorhynchus mykiss PE=2...	[more]
143G1_DANRE	5.179e-42	66.92	14-3-3 protein gamma-1 OS=Danio rerio GN=ywhag1 PE...	[more]
1433G_RAT	5.179e-42	65.38	14-3-3 protein gamma OS=Rattus norvegicus GN=Ywhag...	[more]
1433G_PONAB	5.179e-42	65.38	14-3-3 protein gamma OS=Pongo abelii GN=YWHAG PE=2...	[more]
1433G_MOUSE	5.179e-42	65.38	14-3-3 protein gamma OS=Mus musculus GN=Ywhag PE=1...	[more]
1433G_HUMAN	5.179e-42	65.38	14-3-3 protein gamma OS=Homo sapiens GN=YWHAG PE=1...	[more]

Pages

Properties


Property Name	Value
Genbank description	DC900180 VSS Citrus sinensis cDNA clone VS28206 5, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>DC900180 ID=DC900180; Name=DC900180; organism=Citrus sinensis; type=EST; length=596bp
TGAACACCTAATCCCATCCTCCACATCTGGAGAATCAACCGTGTTTTACT
ATAAGATGAAAGGAGATTATTACCGTTACCTAGCTGAGTTCAAAGGTGCT
GATGATCGTAAGGAAGCTGCAGATCATTCACTTAAGGCTTACGAGGCTGC
TACAGCTGCAGCAGCCTCAGAGTTACCCCCAACTCATCCAATCAGACTTG
GCCTGGCTCTTAACTTTTCTGTTTTCTACTATGAGATTTTGAACTCACCT
GAGAGGGCTTGCCACCTGGCTAAACAAGCATTTGATGAGGCTATTGCTGA
ACTTGATAGCCTTAATGAAGAGTCCTACAAGGACAGCACCCTTATTATGC
AGCTTCTTCGGGATAATCTCACCTTGTGGACCTCGGATCTACCGGAGGAG
GGAGGTGAGCAATCTAAAGGTGATGAAGTTCAAGCAGAGAGCTAGCCGGG
GATGCATGAGCATCAGGAGGAGAAATTGTGCTAGTTGGGTTCTAATATCT
ATTAGTATTAGTAGTATAGGGATTGAAAGAACATTTGGCTTGTATAATAC
TTATTACATGTTTTTAATTTCAGGTTGTTGTGCTATTTTCTGTTTA