DC900176

Overview
NameDC900176
Unique NameDC900176
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length659
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900176 vs. ExPASy Swiss-Prot
Match: AMP2B_ARATH (Methionine aminopeptidase 2B OS=Arabidopsis thaliana GN=MAP2B PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.029e-12
Identity = 37/113 (32.74%), Postives = 65/113 (57.52%), Query Frame = 3
Query:  165 EEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFI 503
            E++EL+     +    + AAE+  +  + V S  KPG+ + D+CE  ++ +R+         +  ++ G+AFP+  S+N    H++P + D+TVLQ  D++K+D G HIDG I
Sbjct:  115 EKRELERFEKPIYNSVRRAAEVHRQVRKYVRSIVKPGMLMTDICETLENTVRKLIS------ENGLQAGIAFPTGCSLNWVAAHWTPNSGDKTVLQYDDVMKLDFGTHIDGHI 221          
BLAST of DC900176 vs. ExPASy Swiss-Prot
Match: AMPM_PYRFU (Methionine aminopeptidase OS=Pyrococcus furiosus GN=map PE=1 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.748e-12
Identity = 39/103 (37.86%), Postives = 54/103 (52.43%), Query Frame = 3
Query:  207 KYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVA 515
            K   A EIA K  +  +   +PG+ +++L E  +  I E  G              AFP  +S+N    H++P   D TVL+EGD +KID+G HIDGFIA  A
Sbjct:    5 KLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKP------------AFPVNLSINEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTA 95          
BLAST of DC900176 vs. ExPASy Swiss-Prot
Match: AMPM_PYRAB (Methionine aminopeptidase OS=Pyrococcus abyssi GN=map PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.813e-12
Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  201 VTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGV--AFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVA 515
            V K   A +IA K  +  V   KPGV +++L EK +  I              IE G   AFP  +S+N    H++P   DET L+EGD +KID+G HIDG+IA  A
Sbjct:    3 VDKLIEAGKIAKKVREEAVKLAKPGVSLLELAEKIEGRI--------------IELGAKPAFPVNLSLNEIAAHYTPYKGDETTLKEGDYLKIDIGVHIDGYIADTA 95          
BLAST of DC900176 vs. ExPASy Swiss-Prot
Match: ARX1_SCHPO (Probable metalloprotease arx1 OS=Schizosaccharomyces pombe GN=arx1 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.151e-11
Identity = 35/111 (31.53%), Postives = 64/111 (57.66%), Query Frame = 3
Query:  204 TKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSP-----LASDETV--LQEGDMIKIDLGCHIDGFIAVVA 515
            +KY+ A  + +KA   V S C PG    ++   GD+ + E   ++YK+  ++ E+G+A P+ + VNN   +++P     +A ++    LQ GD+ KI +G H DG+ A+++
Sbjct:   19 SKYRDAGALVSKAFHQVASRCVPGASTREISSYGDNLLHEYKSSIYKS--QRFEKGIAEPTSICVNNCAYNYAPGPESVIAGNDNSYHLQVGDVTKISMGLHFDGYTALIS 127          
BLAST of DC900176 vs. ExPASy Swiss-Prot
Match: AMPM_SULSO (Methionine aminopeptidase OS=Sulfolobus solfataricus GN=map PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 4.374e-11
Identity = 40/119 (33.61%), Postives = 63/119 (52.94%), Query Frame = 3
Query:  201 VTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAPSCLRMSLYRQAAD 557
            + K   A +IA KA   V  + K   K++D+CE+ +S I E             +   +FP  +S+N+   H+SP  +DE  + EG ++K+DLG HIDGFI+  A +    S Y++  D
Sbjct:    6 LNKLLLAGKIAAKARDEVSLDVKASAKVLDICEEVESIIIEN------------KAFPSFPCNISINSEAAHYSPTINDEKRIPEGAVVKLDLGAHIDGFISDTAITISLDSRYQRLLD 112          
BLAST of DC900176 vs. ExPASy Swiss-Prot
Match: ARX1_CANAL (Probable metalloprotease ARX1 OS=Candida albicans GN=ARX1 PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 46/139 (33.09%), Postives = 71/139 (51.08%), Query Frame = 3
Query:  171 KELDLTSPEVVTKYKSAAEIANKALQLVVS--------ECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDET--VLQEGDMIKIDLGCHIDGFIAVVAPSCLRMSLYRQAAD 557
            K+ ++    VV KY+ A +I   AL  + S        +  P + I  LC   DSF+ +     Y N  K  E+G+A P+ ++VN  L  FSP   DE    L +GD++ I LG HIDG+ + V+ +   + +Y  +AD
Sbjct:   15 KQKNVLDELVVEKYRVAGQITQTALAYITSLINNSYHLQTSPKLTIQQLCLLTDSFLLKLLSRQYVN--KVNEKGIAHPTTINVNQLLNGFSPEIDDEREFFLNQGDVVTISLGVHIDGYTSQVSHT---LVIYPPSAD 148          
BLAST of DC900176 vs. ExPASy Swiss-Prot
Match: AMPM_PYRKO (Methionine aminopeptidase OS=Pyrococcus kodakaraensis GN=map PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 38/99 (38.38%), Postives = 53/99 (53.54%), Query Frame = 3
Query:  219 AAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVA 515
            A EIA +  + VV   KPG K+ D+ E  +  I E  G              AFP  +S+N    H++P   D TVL+EGD +K+D+G H+DG+IA  A
Sbjct:   10 AGEIARQVKKEVVDLIKPGAKLYDIAEFVERRIVELGGKP------------AFPCNLSINEIAAHYTPYKGDGTVLKEGDYLKLDIGVHVDGYIADTA 96          
BLAST of DC900176 vs. ExPASy Swiss-Prot
Match: AMPM_METFE (Probable methionine aminopeptidase (Fragment) OS=Methanothermus fervidus PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  207 KYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVAPSCL 527
            K+K A +IA+K  +  +   K  +KI+DL E              +N  +K+    AFP  +SVN    H+SP  +D+  +  GD++KID+G H+DGFI   A + L
Sbjct:    3 KFKKAGKIASKVRKKAIKAVKGEMKILDLAE------------FIENEIEKMGAKPAFPCNISVNEITAHYSPPCNDDRKILPGDLVKIDIGVHVDGFIGDTATTVL 97          
BLAST of DC900176 vs. ExPASy Swiss-Prot
Match: AMPM_ARCFU (Methionine aminopeptidase OS=Archaeoglobus fulgidus GN=map PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.461e-11
Identity = 39/109 (35.78%), Postives = 61/109 (55.96%), Query Frame = 3
Query:  195 EVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIREQTGNMYKNVKKKIERGV--AFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFIAVVA 515
            EV  K   A +I  +A+     +  PGVKI+++ E  ++ I              IE G   AFP+ +S+N+   HF+P  +DE   +EGD++K+D+G HIDG+IA +A
Sbjct:    4 EVREKLIEAGKILKQAVNEAAEKIAPGVKILEVAEFVENRI--------------IELGAKPAFPANISINSDAAHFTPKKNDERTFKEGDVVKLDVGAHIDGYIADMA 98          
BLAST of DC900176 vs. ExPASy Swiss-Prot
Match: AMPM2_DICDI (Methionine aminopeptidase 2 OS=Dictyostelium discoideum GN=metap2 PE=3 SV=3)

HSP 1 Score: 67.0106 bits (162), Expect = 9.744e-11
Identity = 39/128 (30.47%), Postives = 70/128 (54.69%), Query Frame = 3
Query:  129 STKIKTMSDDEREEKELDLTSPEVVTKYKSAAEIANKALQLVVSECKPGVKIVDLCEKGDSFIR---EQTGNMYKNVKKKIERGVAFPSCVSVNNTLCHFSPLASDETVLQEGDMIKIDLGCHIDGFI 503
            S   +T S+++R E+ +      +    + AAE+  +  + V    KPG+ + +L E  ++  R   E  G         ++ G+AFP+ VS+N+   HF+P   D+TVL++ D++KID G H++G+I
Sbjct:  105 SNSYRTTSEEKRLEERIHAN---IYNDVRRAAEVHRQVRKYVQGIVKPGLGLTELVESLENASRTLIEADG---------LKAGIAFPTGVSLNHIAAHFTPNTGDKTVLKKDDVLKIDFGTHVNGYI 220          
The following BLAST results are available for this feature:
BLAST of DC900176 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
AMP2B_ARATH3.029e-1232.74Methionine aminopeptidase 2B OS=Arabidopsis thalia... [more]
AMPM_PYRFU6.748e-1237.86Methionine aminopeptidase OS=Pyrococcus furiosus G... [more]
AMPM_PYRAB8.813e-1240.19Methionine aminopeptidase OS=Pyrococcus abyssi GN=... [more]
ARX1_SCHPO1.151e-1131.53Probable metalloprotease arx1 OS=Schizosaccharomyc... [more]
AMPM_SULSO4.374e-1133.61Methionine aminopeptidase OS=Sulfolobus solfataric... [more]
ARX1_CANAL7.461e-1133.09Probable metalloprotease ARX1 OS=Candida albicans ... [more]
AMPM_PYRKO7.461e-1138.38Methionine aminopeptidase OS=Pyrococcus kodakaraen... [more]
AMPM_METFE7.461e-1134.58Probable methionine aminopeptidase (Fragment) OS=M... [more]
AMPM_ARCFU7.461e-1135.78Methionine aminopeptidase OS=Archaeoglobus fulgidu... [more]
AMPM2_DICDI9.744e-1130.47Methionine aminopeptidase 2 OS=Dictyostelium disco... [more]

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Properties
Property NameValue
Genbank descriptionDC900176 VSS Citrus sinensis cDNA clone VS28202 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900176 ID=DC900176; Name=DC900176; organism=Citrus sinensis; type=EST; length=659bp
CCCTATCGAGCCACCTCTTCAGTCTTCACCCTCTTTCTCTCTATCTCGTA
TTCTATTTTTTTATCTTTGCAGTACCCTAGCTTCACCGCCGTCACCGTCA
GTTTATCACAATTGTTTGGTAGATTTTTTCTACAAAAATCAAAACGATGT
CGGACGATGAAAGGGAGGAGAAGGAGTTGGATCTCACTTCTCCTGAAGTT
GTCACCAAATACAAAAGCGCTGCTGAGATCGCCAATAAGGCGTTGCAGTT
GGTAGTATCAGAATGCAAACCCGGTGTTAAGATTGTTGACCTTTGTGAGA
AGGGAGATTCATTTATTAGAGAACAAACCGGCAACATGTACAAGAATGTA
AAGAAGAAGATCGAGAGGGGCGTTGCATTCCCAAGTTGTGTTTCTGTTAA
CAACACACTCTGTCATTTTTCACCACTTGCAAGTGATGAGACAGTCTTGC
AAGAAGGAGACATGATCAAGATTGATTTGGGATGTCACATAGATGGGTTT
ATTGCTGTAGTTGCACCCTCATGTCTCAGGATGAGCCTGTACAGGCAGGC
AGCTGATGTATTGCTGAGCAATCTGCTGCTGAGGTGCTGAGCTGTAGGCC
GGAAGAGACAAGATGTACAGAGCATCAGAGTACTGTGATTATGAGATGTG
AGGGTCTAG
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