DC900174

Overview
NameDC900174
Unique NameDC900174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8201 contig Csv1_Contig8201:73..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_AURPU (Orotidine 5'-phosphate decarboxylase OS=Aureobasidium pullulans GN=URA3 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 6.831e-30
Identity = 69/140 (49.29%), Postives = 89/140 (63.57%), Query Frame = 1
Query:   13 LFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIVDXXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            L +++  K++NLC++ADV+T  ELLQ+AE+VG  IC+LKTH DI+ DF P     L+ IA K +FL+FEDRKF DIG+TV  Q   G   I+ WA+IINAHI  GP I+                 AEMSSAGNL  G +
Sbjct:   27 LLRLIAAKKTNLCVSADVSTTRELLQLAEEVGDSICMLKTHADIINDFGPRTIEGLKEIAAKKHFLVFEDRKFGDIGSTVQKQFTAGPLQIVRWANIINAHIFPGPAII-TALSQARPRCRQLLILAEMSSAGNLMTGSY 165          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_CANBO (Orotidine 5'-phosphate decarboxylase OS=Candida boidinii GN=URA3 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 8.921e-30
Identity = 69/147 (46.94%), Postives = 96/147 (65.31%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGS--KLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIV---DXXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            R+LF +M  K++NLC + D+ T  E+L + EKVGP ICL+KTH+DI+ DF+ + G+   L A+A+K+NF+IFEDRKFADIGNTV  Q +GG++ I  W+DI NAH ++G GIV                    AE+SS G +A G +
Sbjct:   23 RRLFNLMETKKTNLCASVDLTTTKEILDLLEKVGPYICLVKTHIDIVSDFSYE-GTIVPLLALAKKYNFMIFEDRKFADIGNTVKSQYKGGVYQIAKWSDITNAHGVTGSGIVTGLKQAAEEVTDEPRGLLMLAELSSKGAIAHGKY 168          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_HANFA (Orotidine 5'-phosphate decarboxylase OS=Hansenula fabianii GN=URA3 PE=3 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 1.165e-29
Identity = 70/147 (47.62%), Postives = 94/147 (63.95%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGS--KLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIV---DXXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            ++LF VM +K+SNLC + DV T  E L + + +GP ICL+KTH+DI+ DF+ + G+   L+ +AEKHNFLIFEDRKFADIG TV  Q   G+F I  W+DI NAH ++G GIV                    AE+SS G+LA G++
Sbjct:   20 KRLFTVMEQKKSNLCASIDVKTTDEFLSLVDTLGPYICLVKTHIDIIDDFSFE-GTIVPLKKLAEKHNFLIFEDRKFADIGKTVKNQYASGVFKIAQWSDITNAHGVTGAGIVKGLKEAAQETTDEPRGLLMLAELSSKGSLATGEY 165          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_PICJA (Orotidine 5'-phosphate decarboxylase OS=Pichia jadinii GN=URA3 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.987e-29
Identity = 68/146 (46.58%), Postives = 92/146 (63.01%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFG-SKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIV---DXXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            ++LF +M  K++NLC + DV T  ELL++ + +GP ICLLKTH+DI+ DF+ +   + L  ++++HNFLIFEDRKFADIGNTV  Q  GG F I  WADI NAH ++G GIV                    AE+SS G+ A G +
Sbjct:   19 KRLFSLMESKKTNLCASVDVRTTEELLKLVDTLGPYICLLKTHIDIIDDFSMESTVAPLLELSKEHNFLIFEDRKFADIGNTVKAQYAGGAFKIAQWADITNAHGVTGRGIVKGLKEAAQETTDEPRGLLMLAELSSKGSFAHGTY 164          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_CANRU (Orotidine 5'-phosphate decarboxylase OS=Candida rugosa GN=URA3 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.987e-29
Identity = 71/147 (48.30%), Postives = 94/147 (63.95%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGS--KLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIV---DXXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            RKL  +M +K+SNLC + DV T AELL + EK+ P IC++KTH+DI+ DF+ + G+   L A+A+KH FL+FEDRKFADIGNTV  Q  GG++ I  WADI NAH ++G GIV                    AE+SS G +A G +
Sbjct:   19 RKLLALMDEKKSNLCASVDVTTTAELLALVEKLAPYICMVKTHIDIVSDFSYE-GTVVPLVALAKKHRFLLFEDRKFADIGNTVKHQYAGGVYQIARWADITNAHGVTGAGIVAGLKQAAEETTSEPRGLLMLAELSSKGAIAHGKY 164          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_PICST (Orotidine 5'-phosphate decarboxylase OS=Pichia stipitis GN=URA3 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.596e-29
Identity = 66/147 (44.90%), Postives = 96/147 (65.31%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGS--KLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIVD---XXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            ++LF++M  K++NLC + DV T +E L + +K+GP ICL+KTH+DI+ DF+ + G+   L  +++KHNF+IFEDRKFADIGNTV  Q  GG++ I  W+DI NAH ++G GIV                    AE+SS G++A G +
Sbjct:   20 QRLFKLMDSKKTNLCASVDVKTTSEFLSLIDKLGPYICLVKTHIDIIDDFSYE-GTIVPLLELSKKHNFMIFEDRKFADIGNTVKSQYSGGVYKIAQWSDITNAHGVTGSGIVQGLKEAARETTDEPRGLLMLAELSSKGSIAHGKY 165          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_CANMA (Orotidine 5'-phosphate decarboxylase OS=Candida maltosa GN=URA3 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.596e-29
Identity = 67/147 (45.58%), Postives = 95/147 (64.63%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGS--KLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIVD---XXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            ++LF +M  K++NLC + DV T +E L + +K+GP ICL+KTH+DI+ DF+ + G+   L  +A KHNF+IFEDRKFADIGNTV  Q   G++ I  W+DI NAH ++G G+VD                   AE+SS G+LA G++
Sbjct:   20 QRLFHLMDTKKANLCASVDVQTTSEFLSLIDKLGPYICLVKTHIDIIDDFSYE-GTIVPLLELARKHNFMIFEDRKFADIGNTVKHQYTSGVYKISSWSDITNAHGVTGAGVVDGLKQGALETTKEPRGLLMLAELSSKGSLAYGEY 165          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_ASPFU (Orotidine 5'-phosphate decarboxylase OS=Aspergillus fumigatus GN=pyrG PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.596e-29
Identity = 66/151 (43.71%), Postives = 94/151 (62.25%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIVD------XXXXXXXXXXXXXXXXAEMSSAGNLAKGDFRAA 441
            ++LF++   K++N+ ++ADV T  ELL +A+++GP I ++KTH+DIL DF+ D  + L  +A+KHNFLIFEDRKF DIGNTV  Q  GG   I +WA IIN  ++ G GIV+                      AEM+S G+LA G++  A
Sbjct:   22 KRLFEIAEAKKTNVTVSADVTTTRELLDLADRLGPYIAVIKTHIDILTDFSVDTINGLNVLAQKHNFLIFEDRKFIDIGNTVQKQYHGGALRISEWAHIINCSVLPGEGIVEALAQTASAQDFPYGPERGLLVLAEMTSKGSLATGEYTKA 172          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_PARBR (Orotidine 5'-phosphate decarboxylase OS=Paracoccidioides brasiliensis GN=URA3 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 7.552e-29
Identity = 58/112 (51.79%), Postives = 84/112 (75.00%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIVD 342
            R+LFQ+  +K+SN+ ++ADV T+ ELL +A+++GP I +LKTH+DIL D +P   + L+++A KH FL+FEDRKF DIG+TV  Q  GG   I +WA I+N  +++GPGIVD
Sbjct:   22 RQLFQIAEEKKSNVVVSADVTTSKELLDLADRLGPYITVLKTHIDILTDLSPTTLTSLKSLASKHRFLLFEDRKFVDIGSTVQKQYHGGSLRISEWAHIVNCAMLAGPGIVD 133          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_CANDC (Orotidine 5'-phosphate decarboxylase OS=Candida dubliniensis (strain CD36 / CBS 7987 / NCPF 3949 / NRRL Y-17841) GN=URA3 PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 9.864e-29
Identity = 64/148 (43.24%), Postives = 95/148 (64.19%), Query Frame = 1
Query:    7 RKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPDFGSK-LRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIVD-----XXXXXXXXXXXXXXXXAEMSSAGNLAKGDF 432
            ++LF++M  K++NLC + DV T  E L++ +K+GP +CL+KTH+DI+ DF+ +   + L  ++ KH F+IFEDRKFADIGNTV  Q  GG++ I  WADI NAH ++G G+V+                     AE+SS G+LA G++
Sbjct:   21 QRLFRLMESKKTNLCASIDVDTTKEFLELIDKLGPYVCLIKTHIDIINDFSYESTIEPLLELSRKHQFMIFEDRKFADIGNTVKKQYIGGVYKISSWADITNAHGVTGNGVVEGLKQGAKETTTDQEPRGLLMLAELSSVGSLAYGEY 168          
The following BLAST results are available for this feature:
BLAST of DC900174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PYRF_AURPU6.831e-3049.29Orotidine 5'-phosphate decarboxylase OS=Aureobasid... [more]
PYRF_CANBO8.921e-3046.94Orotidine 5'-phosphate decarboxylase OS=Candida bo... [more]
PYRF_HANFA1.165e-2947.62Orotidine 5'-phosphate decarboxylase OS=Hansenula ... [more]
PYRF_PICJA1.987e-2946.58Orotidine 5'-phosphate decarboxylase OS=Pichia jad... [more]
PYRF_CANRU1.987e-2948.30Orotidine 5'-phosphate decarboxylase OS=Candida ru... [more]
PYRF_PICST2.596e-2944.90Orotidine 5'-phosphate decarboxylase OS=Pichia sti... [more]
PYRF_CANMA2.596e-2945.58Orotidine 5'-phosphate decarboxylase OS=Candida ma... [more]
PYRF_ASPFU2.596e-2943.71Orotidine 5'-phosphate decarboxylase OS=Aspergillu... [more]
PYRF_PARBR7.552e-2951.79Orotidine 5'-phosphate decarboxylase OS=Paracoccid... [more]
PYRF_CANDC9.864e-2943.24Orotidine 5'-phosphate decarboxylase OS=Candida du... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900174 VSS Citrus sinensis cDNA clone VS28201 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900174 ID=DC900174; Name=DC900174; organism=Citrus sinensis; type=EST; length=450bp
ACTGGGAGAAAATTGTTTCAAGTGATGGTGAAGAAGGAGAGTAATTTGTG
TTTGGCTGCTGATGTTGCCACTGCTGCTGAGTTGCTTCAAATTGCCGAGA
AGGTTGGACCAGAGATCTGCTTGTTGAAAACCCATGTCGATATATTGCCT
GATTTCACCCCAGATTTTGGTTCCAAACTTCGTGCGATTGCAGAAAAGCA
TAACTTCCTAATTTTTGAAGATCGCAAGTTTGCGGACATTGGTAACACTG
TGACCATGCAGGCTGAAGGTGGTATATTTTGTATATTGGATTGGGCCGAT
ATAATAAATGCTCACATAATCTCTGGACCGGGAATTGTGGATGGTCTGAA
ATTAAAGGGATTGCCTCGTGGTAGGGGTCTGTTGCTGCTGGCTGAGATGA
GCTCAGCTGGTAACCTAGCAAAGGGAGACTTCAGAGCAGCTGGAAATGCG
back to top