DC900174

Overview
NameDC900174
Unique NameDC900174
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length450
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8201 contig Csv1_Contig8201:73..521. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_CEPAC (Orotidine 5'-phosphate decarboxylase OS=Cephalosporium acremonium GN=PYR4 PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 4.582e-26
Identity = 60/113 (53.10%), Postives = 80/113 (70.80%), Query Frame = 1
Query:   13 LFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILP--DFTPDFGS--KLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIV 339
            L+++M  K SNLCL+ADVA A ELL +A+KVGP I +LKTH D++   DFTP+ G+  +L  +A KH FLIFEDRKF DIGNTV +Q   G   I++WA I+N +++ G   V
Sbjct:   26 LYKLMDLKASNLCLSADVANARELLHVADKVGPSIVVLKTHYDMVAGWDFTPETGTGARLAKLARKHGFLIFEDRKFGDIGNTVELQYTQGAARIIEWAHIVNVNMVPGKASV 138          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_TRIAT (Orotidine 5'-phosphate decarboxylase OS=Trichoderma atroviride GN=pyr4 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.333e-25
Identity = 60/113 (53.10%), Postives = 79/113 (69.91%), Query Frame = 1
Query:   13 LFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILP--DFTPDFGS--KLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIV 339
            L ++M  K SNLCL+ADV TA ELL +A+K+GP I +LKTH D++   DF PD G+  KL ++A KH FLIFEDRKF DIG+TV +Q   G   I+DWA I+N +++ G   V
Sbjct:   26 LLRLMDLKASNLCLSADVPTARELLYLADKIGPSIVVLKTHYDMVSGWDFHPDTGTGAKLASLARKHGFLIFEDRKFGDIGHTVELQYTSGSARIIDWAHIVNVNMVPGKASV 138          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_TRIRE (Orotidine 5'-phosphate decarboxylase OS=Trichoderma reesei GN=ura3 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.741e-25
Identity = 58/113 (51.33%), Postives = 79/113 (69.91%), Query Frame = 1
Query:   13 LFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPD----FGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIV 339
            LF++M  K SNLCL+ADV TA ELL +A+K+GP I +LKTH D++  +T       G++L ++A KH FLIFEDRKF DIG+TV +Q  GG   I+DWA I+N +++ G   V
Sbjct:   26 LFKLMDLKASNLCLSADVPTARELLYLADKIGPSIVVLKTHYDMVSGWTSHPETGTGAQLASLARKHGFLIFEDRKFGDIGHTVELQYTGGSARIIDWAHIVNVNMVPGKASV 138          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_NEUCR (Orotidine 5'-phosphate decarboxylase OS=Neurospora crassa GN=pyr-4 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.514e-24
Identity = 60/113 (53.10%), Postives = 78/113 (69.03%), Query Frame = 1
Query:   13 LFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILP--DFTPDFGS--KLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIV 339
            LF++M  K+SNLCL+ADV  A +LL +A+KVGP I +LKTH D++   D+ P  G+  KL A+A KH FLIFEDRKF DIG+TV  Q   G   I++WA I NA I +G  +V
Sbjct:   32 LFRLMEVKQSNLCLSADVEHARDLLALADKVGPSIVVLKTHYDLITGWDYHPHTGTGAKLAALARKHGFLIFEDRKFVDIGSTVQKQYTAGTARIVEWAHITNADIHAGEAMV 144          
BLAST of DC900174 vs. ExPASy Swiss-Prot
Match: PYRF_SORMA (Orotidine 5'-phosphate decarboxylase OS=Sordaria macrospora GN=URA3 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 7.315e-24
Identity = 59/113 (52.21%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   13 LFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILP--DFTPDFGS--KLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFCILDWADIINAHIISGPGIV 339
            LF++M  K+SNLCL+ DV  A ELL +A+K+GP I +LKTH D++   D+ P  G+  KL A+A KH FLIFEDRKF DIG+TV  Q   G   I++WA I NA I +G  +V
Sbjct:   30 LFRLMEVKQSNLCLSDDVEHARELLALADKIGPSIVVLKTHYDLITGWDYHPHTGTGAKLAALARKHGFLIFEDRKFVDIGSTVQKQYTAGTARIVEWAHITNADIHAGEAMV 142          
The following BLAST results are available for this feature:
BLAST of DC900174 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PYRF_CEPAC4.582e-2653.10Orotidine 5'-phosphate decarboxylase OS=Cephalospo... [more]
PYRF_TRIAT1.333e-2553.10Orotidine 5'-phosphate decarboxylase OS=Trichoderm... [more]
PYRF_TRIRE1.741e-2551.33Orotidine 5'-phosphate decarboxylase OS=Trichoderm... [more]
PYRF_NEUCR2.514e-2453.10Orotidine 5'-phosphate decarboxylase OS=Neurospora... [more]
PYRF_SORMA7.315e-2452.21Orotidine 5'-phosphate decarboxylase OS=Sordaria m... [more]

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Properties
Property NameValue
Genbank descriptionDC900174 VSS Citrus sinensis cDNA clone VS28201 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900174 ID=DC900174; Name=DC900174; organism=Citrus sinensis; type=EST; length=450bp
ACTGGGAGAAAATTGTTTCAAGTGATGGTGAAGAAGGAGAGTAATTTGTG
TTTGGCTGCTGATGTTGCCACTGCTGCTGAGTTGCTTCAAATTGCCGAGA
AGGTTGGACCAGAGATCTGCTTGTTGAAAACCCATGTCGATATATTGCCT
GATTTCACCCCAGATTTTGGTTCCAAACTTCGTGCGATTGCAGAAAAGCA
TAACTTCCTAATTTTTGAAGATCGCAAGTTTGCGGACATTGGTAACACTG
TGACCATGCAGGCTGAAGGTGGTATATTTTGTATATTGGATTGGGCCGAT
ATAATAAATGCTCACATAATCTCTGGACCGGGAATTGTGGATGGTCTGAA
ATTAAAGGGATTGCCTCGTGGTAGGGGTCTGTTGCTGCTGGCTGAGATGA
GCTCAGCTGGTAACCTAGCAAAGGGAGACTTCAGAGCAGCTGGAAATGCG
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