DC900172

Overview
NameDC900172
Unique NameDC900172
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length749
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3018 contig Csv1_Contig3018:74..822. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900172 vs. ExPASy Swiss-Prot
Match: ADH1A_UROHA (Alcohol dehydrogenase 1A OS=Uromastyx hardwickii PE=1 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 5.168e-25
Identity = 55/143 (38.46%), Postives = 85/143 (59.44%), Query Frame = 1
Query:   25 EAKKXGVTEFVNPKDYDXPVQQVIADMTNG-GVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 450
            +AK+ G TE VNP DY  P+ +V+ D+T G GVD S E  G    M +A    H  +G +++VG+P         P  +   RT KG+ FG +K +  +P +V  +M K+  ++  ITHT+PF +IN+ F+L+ AG+SIR ++
Sbjct:  231 KAKEMGATECVNPLDYKKPINEVLFDLTGGEGVDYSFEVIGRTDTMTAALASCHMDYGTSIIVGLPPSASEITFSPGLIFTGRTWKGSVFGGWKSKDSVPRLVSDFMQKKFSLDPLITHTMPFDKINEGFELLRAGKSIRSVL 373          
BLAST of DC900172 vs. ExPASy Swiss-Prot
Match: ADHL5_ARATH (Alcohol dehydrogenase-like 5 OS=Arabidopsis thaliana GN=At4g22110 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.750e-25
Identity = 58/144 (40.28%), Postives = 85/144 (59.03%), Query Frame = 1
Query:   31 KKXGVTEFVNPKDY-DXPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIRMD 459
            KK G T+F+N     +  + +VI +MT GGVD S EC G    +  AF     G G  V++G+            +LL  R + G+ FG  KP+ D+P +V+ Y+ KEL ++ FITH + F EINKAFDL++ G+S+RCI+ M+
Sbjct:  245 KKFGFTDFINSTLCGENKISEVIKEMTGGGVDYSFECVGLPSLLTEAFSSTRTGSGKTVVLGIDKHLTPVSLGSFDLLRGRHVCGSLFGGLKPKLDIPILVDHYLKKELNLDSFITHELKFEEINKAFDLLVQGKSLRCILWMN 388          
BLAST of DC900172 vs. ExPASy Swiss-Prot
Match: FADH_PICPA (S-(hydroxymethyl)glutathione dehydrogenase OS=Pichia pastoris GN=FLD1 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.151e-24
Identity = 60/153 (39.22%), Postives = 88/153 (57.52%), Query Frame = 1
Query:   19 INEAKKX-----GVTEFVNPKDYDXPVQQV--IADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIRM 456
            IN++KK      G T+FVNP         V  + D+T+GG D + +CTG+VQ M +A E  H GWG ++++GV        T P  L+  R  +G  FG  K R+ +PS+V+ Y++ +++V++FITH      INKAF  M AG  IR +I M
Sbjct:  226 INDSKKAWADQFGATKFVNPTTLPEGTNIVDYLIDITDGGFDYTFDCTGNVQVMRNALESCHKGWGESIIIGVAAAGKEISTRPFQLVTGRVWRGCAFGGIKGRTQMPSLVQDYLDGKIKVDEFITHRHDLDNINKAFHDMHAGNCIRAVITM 378          
BLAST of DC900172 vs. ExPASy Swiss-Prot
Match: ADHL1_ARATH (Alcohol dehydrogenase-like 1 OS=Arabidopsis thaliana GN=At1g22430 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.350e-24
Identity = 58/144 (40.28%), Postives = 83/144 (57.64%), Query Frame = 1
Query:   31 KKXGVTEFVNPKDY-DXPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIRMD 459
            KK G T+F+NP    +  + +VI +MT GGVD S EC G    +  AF     G G  V++G+            +LL  R + G+ FG  K + D+P +V+ Y+ KEL ++ FITH + F EINKAF L+  G+S+RCI+ MD
Sbjct:  244 KKFGFTDFINPTLCGEKKISEVIKEMTEGGVDYSFECVGLASLLNEAFISTRTGTGKTVMLGMEKHAAPISLGSFDLLRGRVICGSLFGGLKSKLDIPILVDHYLKKELNLDSFITHELNFKEINKAFALLEEGKSLRCILWMD 387          
BLAST of DC900172 vs. ExPASy Swiss-Prot
Match: ADHL7_ARATH (Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 5.714e-24
Identity = 55/144 (38.19%), Postives = 86/144 (59.72%), Query Frame = 1
Query:   31 KKXGVTEFVNPKDYDXP-VQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNE-RTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIRM 456
            +K GVTEFVN    +   V +VI +MT+GG D   EC GS   +  A+ C   GWG  + +GV            ++L+  + L G+ FG  K ++ +P ++++Y++ ELE++KF+TH + F EIN AF L+L G+ IRC++ M
Sbjct:  246 QKFGVTEFVNSMTCEKNRVSEVINEMTDGGADYCFECVGSSSLVQEAYACCRQGWGKTITLGVDKPGSQICLDSFDVLHHGKILMGSLFGGLKAKTHIPILLKRYLSNELELDKFVTHEMKFEEINDAFQLLLEGKCIRCVLWM 389          
BLAST of DC900172 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 9.747e-24
Identity = 56/144 (38.89%), Postives = 84/144 (58.33%), Query Frame = 1
Query:   28 AKKXGVTEFVNPKDYDXPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCIIRMD 459
            AKK G T+F++       VQ VI D+T+GGVD + +CTG+V  M    +  H GWG   ++GV          P  ++  R + G+ FG  K RS+LP+ V++YM    +V+++IT+  P   INKAFD M  G+ IRC++ M+
Sbjct:  234 AKKFGATDFIDSSKVKDLVQYVI-DVTDGGVDYAFDCTGNVTVMQQELQFCHKGWGKLCVIGVAAAGKTLDFRPFLVVTGRQVLGSAFGGVKGRSELPNFVDEYMQGHFKVDEYITNEEPLKNINKAFDHMHEGKCIRCVVDMN 376          
BLAST of DC900172 vs. ExPASy Swiss-Prot
Match: ADH7_HUMAN (Alcohol dehydrogenase class 4 mu/sigma chain OS=Homo sapiens GN=ADH7 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.747e-24
Identity = 51/145 (35.17%), Postives = 86/145 (59.31%), Query Frame = 1
Query:   16 QINEAKKXGVTEFVNPKDYDXPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 450
            +  +A   G TE ++PKD   P+ +V+++MT   V  + E  G ++ MI A    H  +G +V+VGVP         PM L   RT KG  FG  K R D+P +V +++ K+ ++++ ITH +PF +I++ F+L+ +G+SIR ++
Sbjct:  228 KFEKAMAVGATECISPKDSTKPISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVPKLVTEFLAKKFDLDQLITHVLPFKKISEGFELLNSGQSIRTVL 372          
BLAST of DC900172 vs. ExPASy Swiss-Prot
Match: ADH6_PONAB (Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.747e-24
Identity = 52/146 (35.62%), Postives = 88/146 (60.27%), Query Frame = 1
Query:   13 QQINEAKKXGVTEFVNPKDYDXPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 450
            ++  +A++ G TE +NP+D   P+Q+V+ DMT+ G+D   E  G++  + +A    ++ +GV V+VG+       K       + R+LKG+ FG +K R  +P +V  YM K+L ++  ITHT+   +IN+A +LM  G+ IRCI+
Sbjct:  228 EKFKKARELGATECLNPQDLKKPIQEVLFDMTDAGIDFCFEAIGNLDVLAAALASCNESYGVCVVVGLLPASVQLKISGQLFFSGRSLKGSVFGGWKSRQHIPKLVADYMAKKLNLDPLITHTLNLDKINEAVELMKTGKCIRCIL 373          
BLAST of DC900172 vs. ExPASy Swiss-Prot
Match: ADH6_RAT (Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Adh6 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.401e-22
Identity = 51/143 (35.66%), Postives = 85/143 (59.44%), Query Frame = 1
Query:   25 EAKKXGVTEFVNPKDYDXPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVG-VPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 450
            +AK  G T+ V+P+D++ P+++V++DM +GGVD   E TG+ +A+ +A    H   GV V VG + +             + R LKG+  G +K + ++P +V  YM K+  ++  ITHT+  SE N+A  LM +G+ IRC++
Sbjct:  232 KAKTVGATDCVDPRDFEKPIEEVLSDMIDGGVDFCFEVTGNTEAVGAALGSCHKDHGVCVTVGALASFTSTLSIRSHLFFSGRILKGSILGGWKTKEEIPKLVSDYMAKKFNIDPLITHTLTLSEANEAVQLMKSGQCIRCVL 374          
BLAST of DC900172 vs. ExPASy Swiss-Prot
Match: ADH6_PERMA (Alcohol dehydrogenase 6 OS=Peromyscus maniculatus GN=ADH6 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.654e-21
Identity = 49/142 (34.51%), Postives = 81/142 (57.04%), Query Frame = 1
Query:   25 EAKKXGVTEFVNPKDYDXPVQQVIADMTNGGVDRSVECTGSVQAMISAFECVHDGWGVAVLVGVPNKDDAFKTHPMNLLNERTLKGTFFGNYKPRSDLPSVVEKYMNKELEVEKFITHTVPFSEINKAFDLMLAGESIRCII 450
            +AK  G TE ++P+D++ P+QQV+ DM N G D + E TG+ + + +A    H   GV V+VG          +     + RTLKG+  G +K + ++P +V  Y  K+  ++  ITHT+   ++N+A  LM  G+ IRC++
Sbjct:  232 KAKTVGATECIDPQDFEKPIQQVLFDMMNDGADFTFEVTGNPETVETALASCHKDHGVCVIVGSLASWIQLNINSHLFFSGRTLKGSVLGGWKTKEEIPKLVSDYTAKKFNLDPLITHTLTLDKVNEAIQLMKNGQCIRCVL 373          
The following BLAST results are available for this feature:
BLAST of DC900172 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 111
Match NameE-valueIdentityDescription
ADH1A_UROHA5.168e-2538.46Alcohol dehydrogenase 1A OS=Uromastyx hardwickii P... [more]
ADHL5_ARATH6.750e-2540.28Alcohol dehydrogenase-like 5 OS=Arabidopsis thalia... [more]
FADH_PICPA1.151e-2439.22S-(hydroxymethyl)glutathione dehydrogenase OS=Pich... [more]
ADHL1_ARATH3.350e-2440.28Alcohol dehydrogenase-like 1 OS=Arabidopsis thalia... [more]
ADHL7_ARATH5.714e-2438.19Alcohol dehydrogenase-like 7 OS=Arabidopsis thalia... [more]
FADH1_SCHPO9.747e-2438.89Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADH7_HUMAN9.747e-2435.17Alcohol dehydrogenase class 4 mu/sigma chain OS=Ho... [more]
ADH6_PONAB9.747e-2435.62Alcohol dehydrogenase 6 OS=Pongo abelii GN=ADH6 PE... [more]
ADH6_RAT2.401e-2235.66Alcohol dehydrogenase 6 OS=Rattus norvegicus GN=Ad... [more]
ADH6_PERMA2.654e-2134.51Alcohol dehydrogenase 6 OS=Peromyscus maniculatus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900172 VSS Citrus sinensis cDNA clone VS27V94 3, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900172 ID=DC900172; Name=DC900172; organism=Citrus sinensis; type=EST; length=749bp
TTTGATTGAACCCAGCAGATCAATGAAGCCAAGAAGTTNGGGGTTACCGA
GTTTGTGAATCCAAAAGATTATGACAANCCTGTTCAACAGGTGATTGCTG
ACATGACCAATGGTGGAGTGGATAGAAGTGTTGAATGTACTGGAAGCGTC
CAGGCCATGATTTCAGCATTTGAATGCGTTCACGATGGTTGGGGTGTTGC
TGTGCTTGTGGGTGTGCCAAACAAAGATGATGCATTCAAGACTCATCCCA
TGAATCTGCTTAATGAGAGGACTCTTAAGGGTACCTTCTTTGGCAACTAC
AAACCTCGCTCTGATCTTCCTTCTGTTGTTGAAAAATACATGAACAAGGA
GTTGGAGGTCGAGAAATTCATCACTCACACTGTGCCCTTCTCGGAGATAA
ACAAGGCATTTGACCTCATGCTTGCGGGAGAAAGCATTAGGTGCATCATT
CGCATGGATGGTTAGATGTGTCTGCTGTTGCTGATCAATCTAATGGAGGC
AGAATGAAGATGATCACATAATTTTCCAAGTTATATATTACCCCGAGAAT
AAGTAATTTATGCTGTATGTTTGATGACTTGCTGCGAATGGCTTTCAAAG
AGTTGTGTTTTCTACATATTTCTTACAGTCCCTTTTTTTGTTTTGTTTTT
CTGTTTGATGACTTGCTGCATATGGCGTACAAAGAGGTGTGTTTTCTACC
TATTTCTTACAGTACTTCTTTTTGTAGCTTATGTAATAAAGATTTTCGT
back to top