DC900171

Overview
NameDC900171
Unique NameDC900171
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length656
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5386 contig Csv1_Contig5386:85..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: FRMA_ECO24 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 8.748e-52
Identity = 95/194 (48.97%), Postives = 132/194 (68.04%), Query Frame = 3
Query:   21 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+F
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVF 193          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: FRMA_SYNY3 (S-(hydroxymethyl)glutathione dehydrogenase OS=Synechocystis sp. (strain PCC 6803) GN=frmA PE=3 SV=1)

HSP 1 Score: 202.986 bits (515), Expect = 1.143e-51
Identity = 99/194 (51.03%), Postives = 131/194 (67.53%), Query Frame = 3
Query:   21 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            ++ +AAVA+E GKPL I E++VAPPQ+ EV +KI  T +CHTD +         LFP + GHE  GIV  VGEGVT +Q GDHV+P++T EC +C  C S ++N+C  +R    +GVM  DG SRFS  G+ +YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+F
Sbjct:    1 MKSRAAVAFEVGKPLQIVEIDVAPPQQGEVLVKITHTGVCHTDAFTLSGDDPEGLFPVVLGHEGAGIVVEVGEGVTSVQLGDHVIPLYTAECGKCLFCRSGKTNLCVAVRATQGKGVM-PDGTSRFSYNGQSLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVF 193          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: ADH7_RAT (Alcohol dehydrogenase class 4 mu/sigma chain OS=Rattus norvegicus GN=Adh7 PE=1 SV=2)

HSP 1 Score: 201.06 bits (510), Expect = 4.342e-51
Identity = 102/199 (51.26%), Postives = 134/199 (67.34%), Query Frame = 3
Query:    6 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            TAG+VI+CKAAV W   +P  IE++EVAPP+  EVR+KIL T +C TD +  +       FP I GHEA GIVESVGE VT ++PGD V+P+F  +C+EC  C + E N+C    + T RGV+  DG +RF+ KGKP+ HF+ TSTF+EYTV     VAKI+  AP +K C++ CG STG+GA V  AK   G + A+F
Sbjct:    3 TAGKVIKCKAAVLWGTNQPFSIEDIEVAPPKAKEVRVKILATGICGTDDHVIKGT-MVSKFPVIVGHEAVGIVESVGEEVTTVRPGDKVIPLFLPQCRECNPCRNPEGNLCIRSDL-TGRGVLA-DGTTRFTCKGKPVQHFMNTSTFTEYTVLDESSVAKIDAEAPPEKACLIGCGFSTGYGAAVKTAKVSPGSTCAVF 198          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: FRMA_ECOSM (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=frmA PE=3 SV=1)

HSP 1 Score: 200.675 bits (509), Expect = 5.670e-51
Identity = 94/194 (48.45%), Postives = 131/194 (67.53%), Query Frame = 3
Query:   21 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T EC EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK +   SVA+F
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTAECGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPDDSVAVF 193          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: FRMA_ECOL6 (S-(hydroxymethyl)glutathione dehydrogenase OS=Escherichia coli O6 GN=frmA PE=3 SV=1)

HSP 1 Score: 200.29 bits (508), Expect = 7.406e-51
Identity = 94/194 (48.45%), Postives = 131/194 (67.53%), Query Frame = 3
Query:   21 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            ++ +AAVA+  GKPL I E++VAPP+K EV +K+  T +CHTD +         +FP + GHE  G+V  VGEGVT ++PGDHV+P++T  C EC  C S ++N+C  +R    +G+M  DG +RFS  G+P+YH++G STFSEYTV     +AKINP A  + VC+L CG++TG GA  N AK + G SVA+F
Sbjct:    1 MKSRAAVAFAPGKPLEIVEIDVAPPKKGEVLIKVTHTGVCHTDAFTLSGDDPEGVFPVVLGHEGAGVVVEVGEGVTSVKPGDHVIPLYTEXCGECEFCRSGKTNLCVAVRETQGKGLM-PDGTTRFSYNGQPLYHYMGCSTFSEYTVVAEVSLAKINPEANHEHVCLLGCGVTTGIGAVHNTAKVQPGDSVAVF 193          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: FADH1_SCHPO (Probable S-(hydroxymethyl)glutathione dehydrogenase 1 OS=Schizosaccharomyces pombe GN=SPBC1539.07c PE=2 SV=2)

HSP 1 Score: 200.29 bits (508), Expect = 7.406e-51
Identity = 93/196 (47.45%), Postives = 136/196 (69.39%), Query Frame = 3
Query:   12 GQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAI 599
            G+ I CKAAVAW A +PL IE+++VAPP+ +EVR+K+ ++++CHTD Y          FP + GHE  GIVES+GEGV +++PGDHV+ ++T ECKEC  C S ++N+C  +R    RG+M  DG SRFS + K + H++G S+FS+YTV     +  I+ +APL  +C+L CG++TGFGA  + AK + G +VA+
Sbjct:    5 GKTITCKAAVAWGAKEPLSIEDIQVAPPKAHEVRVKVDWSAVCHTDAYTLSGVDPEGAFPIVLGHEGAGIVESIGEGVINVRPGDHVILLYTPECKECKFCRSGKTNLCSKIRETQGRGLM-PDGTSRFSCRDKTLLHYMGCSSFSQYTVVADISLVAISHSAPLRSICLLGCGVTTGFGAVTHSAKVESGSTVAV 199          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: ADHP_RABIT (Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctolagus cuniculus GN=ADH2-1 PE=2 SV=2)

HSP 1 Score: 199.519 bits (506), Expect = 1.263e-50
Identity = 99/203 (48.77%), Postives = 134/203 (66.01%), Query Frame = 3
Query:    3 GTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGV---MINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            GT G+VI+CKAA+AWEAGKPL IEEVEVAPP+ +EVR++I    LC +D +    K +    P I GHE  GIVESVG GVT+++PGD V+P++   CK+C  C S  +N C+      +  +   ++ D  SRF+ KGK IYHF G S FS+YTV     +AKI+  A L++VC++ CG STG+GA +N AK   G + A+F
Sbjct:    2 GTKGKVIKCKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQINAAGLCRSDTHVINPKFEGAFLPVILGHEGAGIVESVGPGVTNVKPGDKVIPLYIPHCKKCKFCLSPLTNFCEKFCKGKNPLIEQELMEDKTSRFTCKGKSIYHFFGISAFSQYTVVKDVNLAKIDDDANLERVCLIGCGFSTGYGAAINTAKVTPGSTCAVF 204          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: ADH4_MOUSE (Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE=1 SV=3)

HSP 1 Score: 199.519 bits (506), Expect = 1.263e-50
Identity = 97/221 (43.89%), Postives = 142/221 (64.25%), Query Frame = 3
Query:    3 GTAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLR---INTDRGVMINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGA 656
            GT G+VI+CKAA+AW+ G PL IEE+EV+PP+  EVR++++ T +C TD+   + K +  LFP + GHE  GIVESVG GVT+ +PGD V+P F  +CK C  C S  +N+C  LR     T    ++ D  SRF+ KG+ IYHF+G S+FS+YTV     +A+++  A L++VC++ CG S+G+GA +N AK   G + A+F             +++GA
Sbjct:    2 GTQGKVIKCKAAIAWKTGSPLCIEEIEVSPPKACEVRIQVIATCVCPTDINATDPKKKA-LFPVVLGHECAGIVESVGPGVTNFKPGDKVIPFFAPQCKRCKLCLSPLTNLCGKLRNFKYPTIDQELMEDRTSRFTCKGRSIYHFMGVSSFSQYTVVSEANLARVDDEANLERVCLIGCGFSSGYGAAINTAKVTPGSTCAVFGLGCVGLSAIIGCKIAGA 221          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: ADHQ_RABIT (Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctolagus cuniculus GN=ADH2-2 PE=2 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 8.188e-50
Identity = 97/202 (48.02%), Postives = 134/202 (66.34%), Query Frame = 3
Query:    6 TAGQVIRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGV---MINDGQSRFSIKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIF 602
            T G+VI+CKAA+AWEAGKPL IEEVEVAPP+ +EVR++I+  S+C +D Y      +  L P I GHE  GIVESVG GV + +PGD V+P++   C++C  C S  +N C     + +  +   +++D  SRF+ KGK IYHF+G S FS+YTV     +AKI+  A L +VC++ CG STG+GA +N AK   G + A+F
Sbjct:    3 TKGKVIKCKAAIAWEAGKPLSIEEVEVAPPKAHEVRVQIIAASVCRSDTYVINPAFKEGLLPVILGHECAGIVESVGPGVNNFKPGDKVIPLYVPHCRKCKFCQSPLTNFCTKFSEHKNPIIEQELMDDKTSRFTCKGKSIYHFLGISAFSQYTVVKDINLAKIDDDANLKRVCLIGCGFSTGYGAAINDAKVTPGSTCAVF 204          
BLAST of DC900171 vs. ExPASy Swiss-Prot
Match: ADHL7_ARATH (Alcohol dehydrogenase-like 7 OS=Arabidopsis thaliana GN=At5g42250 PE=2 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.382e-49
Identity = 99/213 (46.48%), Postives = 134/213 (62.91%), Query Frame = 3
Query:   21 IRCKAAVAWEAGKPLVIEEVEVAPPQKNEVRLKILFTSLCHTDVYFWEAKGQTPLFPRIFGHEAGGIVESVGEGVTDLQPGDHVLPVFTGECKECPHCHSEESNMCDLLRINTDRGVMINDGQSRFS-IKGKPIYHFVGTSTFSEYTVTHVGCVAKINPAAPLDKVCVLSCGISTGFGATVNVAKPKKGQSVAIFXXXXXXXXXXXXXRVSGA 656
            IRCKAAV+ +AG+PLV+EE+ VAPPQ  EVR++I+ T+LCH+DV FW+ +     FPRI GHEA G+VESVGE V ++  GD VLP F  +C +C  C S +SN+C          +   D  SRF+ + G+ ++HF+  S+FSEYTV  V  V KI+ + P  + C+LSCG+STG GA    AK +KG +V IF             R+ GA
Sbjct:   17 IRCKAAVSRKAGEPLVMEEIMVAPPQPFEVRIRIICTALCHSDVTFWKLQVPPACFPRILGHEAIGVVESVGENVKEVVEGDTVLPTFMPDCGDCVDCKSHKSNLCSKFPFKVSPWMPRYDNSSRFTDLNGETLFHFLNVSSFSEYTVLDVANVVKIDSSIPPSRACLLSCGVSTGVGAAWETAKVEKGSTVVIFGLGSIGLAVAEGARLCGA 229          
The following BLAST results are available for this feature:
BLAST of DC900171 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 139
Match NameE-valueIdentityDescription
FRMA_ECO248.748e-5248.97S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_SYNY31.143e-5151.03S-(hydroxymethyl)glutathione dehydrogenase OS=Syne... [more]
ADH7_RAT4.342e-5151.26Alcohol dehydrogenase class 4 mu/sigma chain OS=Ra... [more]
FRMA_ECOSM5.670e-5148.45S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FRMA_ECOL67.406e-5148.45S-(hydroxymethyl)glutathione dehydrogenase OS=Esch... [more]
FADH1_SCHPO7.406e-5147.45Probable S-(hydroxymethyl)glutathione dehydrogenas... [more]
ADHP_RABIT1.263e-5048.77Alcohol dehydrogenase class-2 isozyme 1 OS=Oryctol... [more]
ADH4_MOUSE1.263e-5043.89Alcohol dehydrogenase 4 OS=Mus musculus GN=Adh4 PE... [more]
ADHQ_RABIT8.188e-5048.02Alcohol dehydrogenase class-2 isozyme 2 OS=Oryctol... [more]
ADHL7_ARATH2.382e-4946.48Alcohol dehydrogenase-like 7 OS=Arabidopsis thalia... [more]

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Properties
Property NameValue
Genbank descriptionDC900171 VSS Citrus sinensis cDNA clone VS27V94 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900171 ID=DC900171; Name=DC900171; organism=Citrus sinensis; type=EST; length=656bp
CTGGCACAGCTGGTCAAGTTATTCGCTGCAAAGCGGCGGTGGCATGGGAG
GCGGGGAAGCCACTGGTGATTGAAGAAGTGGAGGTGGCTCCACCACAGAA
AAATGAAGTTCGATTGAAGATCCTCTTCACCTCTTTATGCCATACTGATG
TTTACTTCTGGGAAGCCAAGGGACAAACACCTCTCTTTCCTCGCATTTTT
GGTCACGAAGCTGGAGGGATTGTAGAAAGTGTAGGGGAGGGGGTAACTGA
TCTCCAACCAGGAGACCATGTTCTTCCTGTGTTCACAGGAGAGTGCAAGG
AATGTCCTCACTGTCATTCAGAGGAAAGCAATATGTGTGACCTCCTCAGG
ATCAATACTGACAGGGGTGTTATGATTAATGATGGTCAGTCGAGATTCTC
GATTAAGGGGAAGCCAATTTACCATTTTGTGGGCACTTCTACCTTCAGTG
AATACACTGTTACCCATGTCGGTTGTGTTGCTAAGATCAATCCTGCTGCC
CCTCTTGACAAAGTTTGTGTGCTTAGCTGTGGAATCTCCACAGGTTTTGG
GGCTACTGTTAATGTCGCCAAACCGAAGAAGGGCCAGTCTGTTGCCATTT
TTGGATTGGGTGCAGNTGGCCTCGCTGCTGCCGAAGGGGCAAGGGTATCA
GGGGCT
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