CN186111

Overview
NameCN186111
Unique NameCN186111
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_SALEP (30S ribosomal protein S17 OS=Salmonella enteritidis PT4 (strain P125109) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.383e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 2 
Query:  308 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 544
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_SALDC (30S ribosomal protein S17 OS=Salmonella dublin (strain CT_02021853) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.383e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 2 
Query:  308 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 544
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_SALCH (30S ribosomal protein S17 OS=Salmonella choleraesuis GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.383e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 2 
Query:  308 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 544
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_SALAR (30S ribosomal protein S17 OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.383e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 2 
Query:  308 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 544
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_SALA4 (30S ribosomal protein S17 OS=Salmonella agona (strain SL483) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.383e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 2 
Query:  308 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 544
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_PSEPW (30S ribosomal protein S17 OS=Pseudomonas putida (strain W619) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.383e-17
Identity = 37/78 (47.44%), Postives = 59/78 (75.64%), Query Frame = 2 
Query:  311 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 544
            ++++ G VVS+KM K++ V ++R   H +Y +YVKR++K  AHDE+NQC IGD+V +  +RPL+K K WA+ E+L++A
Sbjct:    8 VRTLTGRVVSDKMDKTITVLIERRVKHPIYGKYVKRSTKLHAHDESNQCKIGDKVSIRETRPLAKTKSWALVEVLERA 85
[Close]
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_PSEPG (30S ribosomal protein S17 OS=Pseudomonas putida (strain GB-1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.383e-17
Identity = 37/78 (47.44%), Postives = 59/78 (75.64%), Query Frame = 2 
Query:  311 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 544
            ++++ G VVS+KM K++ V ++R   H +Y +YVKR++K  AHDE+NQC IGD+V +  +RPL+K K WA+ E+L++A
Sbjct:    8 VRTLTGRVVSDKMDKTITVLIERRVKHPIYGKYVKRSTKLHAHDESNQCKIGDKVSIRETRPLAKTKSWALVEVLERA 85
[Close]
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_PSEE4 (30S ribosomal protein S17 OS=Pseudomonas entomophila (strain L48) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.383e-17
Identity = 37/78 (47.44%), Postives = 59/78 (75.64%), Query Frame = 2 
Query:  311 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 544
            ++++ G VVS+KM K++ V ++R   H +Y +YVKR++K  AHDE+NQC IGD+V +  +RPL+K K WA+ E+L++A
Sbjct:    8 VRTLTGRVVSDKMDKTITVLIERRVKHPIYGKYVKRSTKLHAHDESNQCKIGDKVSIRETRPLAKTKSWALVEVLERA 85
[Close]
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_ESCF3 (30S ribosomal protein S17 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.383e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 2 
Query:  308 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 544
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186111 vs. ExPASy Swiss-Prot
Match: RS17_ENTS8 (30S ribosomal protein S17 OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.383e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = 2 
Query:  308 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 544
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
The following BLAST results are available for this feature:
BLAST of CN186111 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_SALEP3.383e-1746.8430S ribosomal protein S17 OS=Salmonella enteritidi... [more]
RS17_SALDC3.383e-1746.8430S ribosomal protein S17 OS=Salmonella dublin (st... [more]
RS17_SALCH3.383e-1746.8430S ribosomal protein S17 OS=Salmonella choleraesu... [more]
RS17_SALAR3.383e-1746.8430S ribosomal protein S17 OS=Salmonella arizonae (... [more]
RS17_SALA43.383e-1746.8430S ribosomal protein S17 OS=Salmonella agona (str... [more]
RS17_PSEPW3.383e-1747.4430S ribosomal protein S17 OS=Pseudomonas putida (s... [more]
RS17_PSEPG3.383e-1747.4430S ribosomal protein S17 OS=Pseudomonas putida (s... [more]
RS17_PSEE43.383e-1747.4430S ribosomal protein S17 OS=Pseudomonas entomophi... [more]
RS17_ESCF33.383e-1746.8430S ribosomal protein S17 OS=Escherichia fergusoni... [more]
RS17_ENTS83.383e-1746.8430S ribosomal protein S17 OS=Enterobacter sakazaki... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186111 ID=CN186111; Name=CN186111; organism=Citrus sinensis; type=EST; length=801bp
GCGGATCTCTCTGAACTTCCGATAGTAAGCTTTATTTAGCCGGTGAGCTA
CGGCGGTAGGTCCGTTCGCTAGAGCTATCTTAGCAAGTACCAACCTTTTA
GCTTCAAGTTTCTCACCTTAGTCACAAACACAGTCGATGAGTTTAAAGCA
ACAATAAACGAAATCCAATTTCACTCAACTCAGACACTAACCGCCCCCTG
AACCCCTGCCGCCGCCTCACCACAAGTTATTGTCGTGCGCCGTCGACCTC
CGTCAGCATCTGCCGTCACTGTAGTATCACTGTTGAAGCATAGTAATCAG
GCCGTCACAAATGAAGTCGGTGGTGGGATTGGTAGTGTCAAACAAGATGC
AAAAATCAGTAGTGGTGGCCGTTGACAGACTCTTTCACCACAAGGTTTAC
AATCGGTATGTCAAACGAACCTCCAAATTCATGGCCCACGACGAGAACAA
TCAATGCAACATCGGTGACCGAGTTAGGTTGGATCCTTCTAGACCGTTAA
GCAAGCATAAGCATTGGGCTGTTGCCGAAATTCTAAAGAAAGCACGTATC
TATGTACCACCCTCAGCGGATAATGCTGCTGCTGCTGCTGTTTCAAATAC
CCAGACTGAAGCACTGGTTTCATCATCTTAAGGTTAAGCTTTACGGGGAC
ATACAGAAAGTGAGAAGACTTGGACCTAGGTAGCAGTTTCCAAGAATTGC
TTGTAGCAATAAAACATGTCGGTTTAATGTTGCCGTTTTGGAATGAGTTA
TGCTTCTAGTTGTGTTGAATTTTTGTCAACCTTTAGACAGATGTACCTAT
G
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