CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186110_ssr290 microsatellite CN186110_ssr290:290..304. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2521 contig Csv1_Contig2521:41..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SYMTH (30S ribosomal protein S17 OS=Symbiobacterium thermophilum GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.126e-19
Identity = 44/80 (55.00%), Postives = 59/80 (73.75%), Query Frame = -1
Query:  327 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARIY 566
            K+ VG+V S+KM K+VVVAV+ L  H +Y + V+RT KF AHDE+NQC +GD+VR+  +RPLSK K W V EI++ A  Y
Sbjct:    9 KTRVGVVTSDKMDKTVVVAVETLVQHPLYKKRVRRTKKFKAHDEHNQCKVGDKVRIMETRPLSKEKRWRVVEIIESAPDY 88          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_FERNB (30S ribosomal protein S17 OS=Fervidobacterium nodosum (strain ATCC 35602 / DSM 5306 / Rt17-B1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.126e-19
Identity = 43/79 (54.43%), Postives = 58/79 (73.42%), Query Frame = -1
Query:  330 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 566
            K +VG+VVS+KM K+V V V+RL  H  + +YVKRT KF AHDENN C +GD V ++ SRPLSK K W V  IL+++++
Sbjct:    4 KRLVGVVVSDKMDKTVTVKVERLVKHAKFGKYVKRTKKFYAHDENNACRVGDVVEIEESRPLSKLKRWVVVNILERSKL 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PELTS (30S ribosomal protein S17 OS=Pelotomaculum thermopropionicum (strain DSM 13744 / JCM 10971 / SI) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 6.695e-19
Identity = 43/78 (55.13%), Postives = 57/78 (73.08%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            K++ G VVSNKM K+VVVAV+ L  H +Y R ++RT KF AHDE N C IGD+V++  +RPLSK K W V EIL++ +
Sbjct:    8 KTLTGRVVSNKMDKTVVVAVETLVRHPLYQRTIRRTKKFKAHDEENACRIGDKVKMMETRPLSKEKRWRVVEILERTK 85          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_VIBVY (30S ribosomal protein S17 OS=Vibrio vulnificus (strain YJ016) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 40/81 (49.38%), Postives = 62/81 (76.54%), Query Frame = -1
Query:  330 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 572
            ++++ +G VVS+KM KS+VVA++R+  H +Y ++VKRT+K  AHDENN+C IGD V +   RPLSK K W + ++++KA+I
Sbjct:    4 KIRTQLGRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTVEIRECRPLSKTKSWTLVKVVEKAKI 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_VIBVU (30S ribosomal protein S17 OS=Vibrio vulnificus GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 40/81 (49.38%), Postives = 62/81 (76.54%), Query Frame = -1
Query:  330 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 572
            ++++ +G VVS+KM KS+VVA++R+  H +Y ++VKRT+K  AHDENN+C IGD V +   RPLSK K W + ++++KA+I
Sbjct:    4 KIRTQLGRVVSDKMDKSIVVAIERMVKHPIYGKFVKRTTKVHAHDENNECGIGDTVEIRECRPLSKTKSWTLVKVVEKAKI 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THESQ (30S ribosomal protein S17 OS=Thermotoga sp. (strain RQ2) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = -1
Query:  339 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 566
            K + G+VVS+KM K+VVVAV++L  H +Y +YVKRT K+ AHDE N+C IGD V ++ +RPLSK K W V  I+++
Sbjct:    4 KRLTGIVVSDKMDKTVVVAVEKLVQHTIYKKYVKRTKKYHAHDERNECKIGDVVEIEETRPLSKTKRWRVVRIIQR 79          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THEP1 (30S ribosomal protein S17 OS=Thermotoga petrophila (strain RKU-1 / ATCC BAA-488 / DSM 13995) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 41/76 (53.95%), Postives = 57/76 (75.00%), Query Frame = -1
Query:  339 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 566
            K + G+VVS+KM K+VVVAV++L  H +Y +YVKRT K+ AHDE N+C IGD V ++ +RPLSK K W V  I+++
Sbjct:    4 KRLTGIVVSDKMDKTVVVAVEKLVQHPIYKKYVKRTKKYHAHDERNECKIGDVVEIEETRPLSKTKRWRVVRIIQR 79          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_METCA (30S ribosomal protein S17 OS=Methylococcus capsulatus GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.142e-18
Identity = 40/79 (50.63%), Postives = 61/79 (77.22%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++SV G VVSNKM +++VVA++R   H +Y +Y++RT+K +AHDENN+C+IGD V L  SRP+SK K W +  I+++A
Sbjct:    7 RVRSVTGRVVSNKMDRTIVVAIERQVSHPLYGKYIRRTTKVLAHDENNECSIGDLVTLHASRPISKKKAWTLGAIVERA 85          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THENN (30S ribosomal protein S17 OS=Thermotoga neapolitana (strain ATCC 49049 / DSM 4359 / NS-E) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.492e-18
Identity = 40/76 (52.63%), Postives = 58/76 (76.32%), Query Frame = -1
Query:  339 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 566
            K ++G+VVS+KM K+VVVAV+R   H +Y +Y+KRT K+ AHDE N+C +GD V ++ +RPLSK K W V +I+K+
Sbjct:    4 KRMIGVVVSDKMDKTVVVAVERHVQHPLYKKYIKRTKKYHAHDEKNECRVGDVVEIEETRPLSKTKRWRVVKIIKR 79          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BAUCH (30S ribosomal protein S17 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rpsQ PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 1.492e-18
Identity = 40/73 (54.79%), Postives = 54/73 (73.97%), Query Frame = -1
Query:  336 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 554
            G VVSNKM KS+VVA++R+  H +Y +Y+KRT+K  AHDENN CNIGD + +   RP+SK K W +  I++KA
Sbjct:   15 GRVVSNKMDKSIVVAIERIIKHPIYGKYIKRTTKIHAHDENNACNIGDLIEIKECRPISKTKSWILIRIIEKA 87          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_SYMTH5.126e-1955.0030S ribosomal protein S17 OS=Symbiobacterium therm... [more]
RS17_FERNB5.126e-1954.4330S ribosomal protein S17 OS=Fervidobacterium nodo... [more]
RS17_PELTS6.695e-1955.1330S ribosomal protein S17 OS=Pelotomaculum thermop... [more]
RS17_VIBVY1.142e-1849.3830S ribosomal protein S17 OS=Vibrio vulnificus (st... [more]
RS17_VIBVU1.142e-1849.3830S ribosomal protein S17 OS=Vibrio vulnificus GN=... [more]
RS17_THESQ1.142e-1853.9530S ribosomal protein S17 OS=Thermotoga sp. (strai... [more]
RS17_THEP11.142e-1853.9530S ribosomal protein S17 OS=Thermotoga petrophila... [more]
RS17_METCA1.142e-1850.6330S ribosomal protein S17 OS=Methylococcus capsula... [more]
RS17_THENN1.492e-1852.6330S ribosomal protein S17 OS=Thermotoga neapolitan... [more]
RS17_BAUCH1.492e-1854.7930S ribosomal protein S17 OS=Baumannia cicadellini... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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