CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECOUT (30S ribosomal protein S17 OS=Escherichia coli (strain UTI89 / UPEC) GN=rpsQ PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECOSM (30S ribosomal protein S17 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECOSE (30S ribosomal protein S17 OS=Escherichia coli (strain SE11) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECOLU (30S ribosomal protein S17 OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECOLI (30S ribosomal protein S17 OS=Escherichia coli (strain K12) GN=rpsQ PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECOLC (30S ribosomal protein S17 OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECOL6 (30S ribosomal protein S17 OS=Escherichia coli O6 GN=rpsQ PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECOL5 (30S ribosomal protein S17 OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECOK1 (30S ribosomal protein S17 OS=Escherichia coli O1:K1 / APEC GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECOHS (30S ribosomal protein S17 OS=Escherichia coli O9:H4 (strain HS) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_ECOUT3.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli (str... [more]
RS17_ECOSM3.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli (str... [more]
RS17_ECOSE3.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli (str... [more]
RS17_ECOLU3.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli O17:... [more]
RS17_ECOLI3.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli (str... [more]
RS17_ECOLC3.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli (str... [more]
RS17_ECOL63.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli O6 G... [more]
RS17_ECOL53.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli O6:K... [more]
RS17_ECOK13.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli O1:K... [more]
RS17_ECOHS3.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli O9:H... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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