CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECODH (30S ribosomal protein S17 OS=Escherichia coli (strain K12 / DH10B) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECOBW (30S ribosomal protein S17 OS=Escherichia coli (strain K12 / BW2952) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECO8A (30S ribosomal protein S17 OS=Escherichia coli O8 (strain IAI1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECO81 (30S ribosomal protein S17 OS=Escherichia coli O81 (strain ED1a) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECO7I (30S ribosomal protein S17 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECO5E (30S ribosomal protein S17 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECO57 (30S ribosomal protein S17 OS=Escherichia coli O157:H7 GN=rpsQ PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECO55 (30S ribosomal protein S17 OS=Escherichia coli (strain 55989 / EAEC) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECO45 (30S ribosomal protein S17 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ECO27 (30S ribosomal protein S17 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKLHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_ECODH3.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli (str... [more]
RS17_ECOBW3.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli (str... [more]
RS17_ECO8A3.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli O8 (... [more]
RS17_ECO813.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli O81 ... [more]
RS17_ECO7I3.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli O7:K... [more]
RS17_ECO5E3.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli O157... [more]
RS17_ECO573.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli O157... [more]
RS17_ECO553.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli (str... [more]
RS17_ECO453.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli O45:... [more]
RS17_ECO273.674e-1746.8430S ribosomal protein S17 OS=Escherichia coli O127... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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