CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_XYLFM (30S ribosomal protein S17 OS=Xylella fastidiosa (strain M12) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = -1
Query:  336 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 569
            ++++ G V+SNKMQK+V V V+R   H +Y +Y+KR++K  AHD ++ CN GD V +    P+SK K+W V EI+ ++
Sbjct:   11 LRTIKGRVISNKMQKTVTVLVERQIKHALYGKYIKRSTKIHAHDADDLCNEGDVVLMTEVAPISKTKNWRVVEIVARS 88          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_XYLFA (30S ribosomal protein S17 OS=Xylella fastidiosa GN=rpsQ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 34/78 (43.59%), Postives = 54/78 (69.23%), Query Frame = -1
Query:  336 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 569
            ++++ G V+SNKMQK+V V V+R   H +Y +Y+KR++K  AHD ++ CN GD V +    P+SK K+W V EI+ ++
Sbjct:   11 LRTIKGRVISNKMQKTVTVLVERQIKHALYGKYIKRSTKLHAHDADDLCNEGDVVLMTEVAPISKTKNWRVVEIVARS 88          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RALME (30S ribosomal protein S17 OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            S  +++VG VVS+KM K+V V ++    H +Y +YV R+ K+ AHDE NQ   GD+V +  +RPLS+ K W V+ +++ AR+
Sbjct:   10 SLRRTLVGRVVSDKMDKTVTVLIENRVKHPLYGKYVLRSKKYHAHDEANQYKEGDKVEIQETRPLSRTKSWVVSRLVEAARV 91          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RALEJ (30S ribosomal protein S17 OS=Ralstonia eutropha (strain JMP134) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            S  +++VG VVS+KM K+V V V+    H +Y +YV R+ K+ AHDE NQ   GD+V +   RPLS+ K W V+ +++ AR+
Sbjct:   10 SLRRTLVGRVVSDKMDKTVTVLVENRVKHPLYGKYVLRSKKYHAHDEANQYKEGDKVEIQEGRPLSRTKSWVVSRLVEAARV 91          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RALEH (30S ribosomal protein S17 OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 36/82 (43.90%), Postives = 54/82 (65.85%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            S  +++VG VVS+KM K+V V V+    H +Y +YV R+ K+ AHDE NQ   GD+V +   RPLS+ K W V+ +++ AR+
Sbjct:   10 SLRRTLVGRVVSDKMDKTVTVLVENRVKHPLYGKYVLRSKKYHAHDEANQYKEGDKVEIQEGRPLSRTKSWVVSRLVEAARV 91          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PETMO (30S ribosomal protein S17 OS=Petrotoga mobilis (strain DSM 10674 / SJ95) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 35/76 (46.05%), Postives = 52/76 (68.42%), Query Frame = -1
Query:  339 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 566
            K + G VVSN M K++ V  DRL  H  Y+++V++T ++ AHDENN+C IGD V ++ SR LSK K + +  I++K
Sbjct:    4 KIITGKVVSNAMDKTITVETDRLTKHPKYHKFVRKTRRYHAHDENNECEIGDIVEIEESRKLSKTKAFVLKRIVRK 79          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LEGPL (30S ribosomal protein S17 OS=Legionella pneumophila (strain Lens) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 33/77 (42.86%), Postives = 52/77 (67.53%), Query Frame = -1
Query:  345 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 575
            S  ++++G VVS+KM K++VV ++R   H  Y + +KR +K  AHDEN  C +G+ V++  SRPLSK K W + E++
Sbjct:    7 SNARTMIGKVVSDKMDKTIVVMIERTVKHPKYGKIMKRRTKLHAHDENQVCRVGNTVKIRESRPLSKTKSWVLVEVI 83          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LEGPH (30S ribosomal protein S17 OS=Legionella pneumophila subsp. pneumophila (strain Philadelphia 1 / ATCC 33152 / DSM 7513) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 33/77 (42.86%), Postives = 52/77 (67.53%), Query Frame = -1
Query:  345 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 575
            S  ++++G VVS+KM K++VV ++R   H  Y + +KR +K  AHDEN  C +G+ V++  SRPLSK K W + E++
Sbjct:    7 SNARTMIGKVVSDKMDKTIVVMIERTVKHPKYGKIMKRRTKLHAHDENQVCRVGNTVKIRESRPLSKTKSWVLVEVI 83          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LEGPC (30S ribosomal protein S17 OS=Legionella pneumophila (strain Corby) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 33/77 (42.86%), Postives = 52/77 (67.53%), Query Frame = -1
Query:  345 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 575
            S  ++++G VVS+KM K++VV ++R   H  Y + +KR +K  AHDEN  C +G+ V++  SRPLSK K W + E++
Sbjct:    7 SNARTMIGKVVSDKMDKTIVVMIERTVKHPKYGKIMKRRTKLHAHDENQVCRVGNTVKIRESRPLSKTKSWVLVEVI 83          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LEGPA (30S ribosomal protein S17 OS=Legionella pneumophila (strain Paris) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 8.469e-14
Identity = 33/77 (42.86%), Postives = 52/77 (67.53%), Query Frame = -1
Query:  345 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 575
            S  ++++G VVS+KM K++VV ++R   H  Y + +KR +K  AHDEN  C +G+ V++  SRPLSK K W + E++
Sbjct:    7 SNARTMIGKVVSDKMDKTIVVMIERTVKHPKYGKIMKRRTKLHAHDENQVCRVGNTVKIRESRPLSKTKSWVLVEVI 83          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_XYLFM8.469e-1443.5930S ribosomal protein S17 OS=Xylella fastidiosa (s... [more]
RS17_XYLFA8.469e-1443.5930S ribosomal protein S17 OS=Xylella fastidiosa GN... [more]
RS17_RALME8.469e-1442.6830S ribosomal protein S17 OS=Ralstonia metallidura... [more]
RS17_RALEJ8.469e-1443.9030S ribosomal protein S17 OS=Ralstonia eutropha (s... [more]
RS17_RALEH8.469e-1443.9030S ribosomal protein S17 OS=Ralstonia eutropha (s... [more]
RS17_PETMO8.469e-1446.0530S ribosomal protein S17 OS=Petrotoga mobilis (st... [more]
RS17_LEGPL8.469e-1442.8630S ribosomal protein S17 OS=Legionella pneumophil... [more]
RS17_LEGPH8.469e-1442.8630S ribosomal protein S17 OS=Legionella pneumophil... [more]
RS17_LEGPC8.469e-1442.8630S ribosomal protein S17 OS=Legionella pneumophil... [more]
RS17_LEGPA8.469e-1442.8630S ribosomal protein S17 OS=Legionella pneumophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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