CN186110
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_DEHSB (30S ribosomal protein S17 OS=Dehalococcoides sp. (strain BAV1) GN=rpsQ PE=3 SV=1) HSP 1 Score: 76.2554 bits (186), Expect = 2.464e-13 Identity = 31/79 (39.24%), Postives = 54/79 (68.35%), Query Frame = -1 Query: 330 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 566 K+ +G V+S+KM+K++VV +D + H +Y + +RT K++ HDE N+ IGD + + RP+SK K+W +++I+ K I Sbjct: 6 KTRIGHVISDKMEKTIVVGIDVVKRHPLYKKTYRRTMKYLVHDEKNEAKIGDMIEIVECRPISKGKYWRLSKIITKGHI 84
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_VARPS (30S ribosomal protein S17 OS=Variovorax paradoxus (strain S110) GN=rpsQ PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13 Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = -1 Query: 336 RPSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 581 + S ++++G VVS+K K+V V V+R H++Y + V +TSK+ AHDE + +GD + + SRP+SK K+W V +++KA Sbjct: 5 KKSLKRTLIGKVVSDKRAKTVTVLVERRVKHELYGKIVAKTSKYHAHDEKGEYKLGDTIEITESRPISKTKNWVVTRLVEKA 86
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PROAC (30S ribosomal protein S17 OS=Propionibacterium acnes GN=rpsQ PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13 Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = -1 Query: 333 RPSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 581 R ++ K GLVVS+KM K++ V V+ H +Y + + ++ + AHDENN+ +GDRVR+ +RPLS K W + EI++KA+ Sbjct: 8 RTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDENNEAGMGDRVRIMETRPLSATKRWRLVEIIEKAK 90
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_MYCUA (30S ribosomal protein S17 OS=Mycobacterium ulcerans (strain Agy99) GN=rpsQ PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13 Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = -1 Query: 333 RPS-QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 581 +PS + K+ +G VVS+KMQK++VV ++ H +Y + ++ T K HDE++ IGDRV L +RPLS K W + EIL+KA+ Sbjct: 37 KPSGRRKTRIGYVVSDKMQKTIVVELEDRVRHPLYGKIIRTTKKVKVHDEHSAAGIGDRVSLMETRPLSATKRWRLVEILEKAK 120
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_MYCPA (30S ribosomal protein S17 OS=Mycobacterium paratuberculosis GN=rpsQ PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13 Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = -1 Query: 333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566 K+ +G VVS+KMQK++VV ++ H +Y + ++ T K AHDEN+ IGDRV L +RP S K W + EIL+KA+ Sbjct: 40 KTRIGYVVSDKMQKTIVVELEDRVKHPLYGKIIRTTKKVKAHDENSIAGIGDRVSLMETRPTSATKRWRLVEILEKAK 117
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BORHD (30S ribosomal protein S17 OS=Borrelia hermsii (strain DAH) GN=rpsQ PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13 Identity = 32/78 (41.03%), Postives = 55/78 (70.51%), Query Frame = -1 Query: 333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566 K ++G VVS+KM K++VV + + H +Y++Y+K + + AHDE + +GD+VR+ SRP+SK K W + EIL++++ Sbjct: 7 KDLIGKVVSDKMSKTIVVEIVQRKMHPIYHKYLKVSRRVKAHDEREESRLGDKVRIIESRPISKEKRWMLVEILERSK 84
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ACTSZ (30S ribosomal protein S17 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpsQ PE=3 SV=1) HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13 Identity = 31/81 (38.27%), Postives = 54/81 (66.67%), Query Frame = -1 Query: 330 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 572 ++++V G V+S+KM KS +A++R H + ++++RT+K HDENN+ +GD V + RP+SK K W + +++KA I Sbjct: 4 KIRTVQGRVISDKMDKSFTIAIERKVKHPLLGKFIRRTTKLHVHDENNEARLGDWVEIKECRPVSKTKSWTLVRVVEKATI 84
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_UREU1 (30S ribosomal protein S17 OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rpsQ PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13 Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = -1 Query: 333 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 575 S+ K + GLVVS+KMQK+VVV+V+ H +Y + V K+ AH++N+ +GD V + +RPLS K+W V++IL++AR Sbjct: 4 SRRKVLEGLVVSDKMQKTVVVSVETKSKHPIYRKLVISHKKYHAHNDNDDAKVGDLVEITETRPLSATKNWRVSKILERAR 84
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_UREPA (30S ribosomal protein S17 OS=Ureaplasma parvum GN=rpsQ PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13 Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = -1 Query: 333 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 575 S+ K + GLVVS+KMQK+VVV+V+ H +Y + V K+ AH++N+ +GD V + +RPLS K+W V++IL++AR Sbjct: 4 SRRKVLEGLVVSDKMQKTVVVSVETKSKHPIYRKLVISHKKYHAHNDNDDAKVGDLVEITETRPLSATKNWRVSKILERAR 84
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_UREP2 (30S ribosomal protein S17 OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rpsQ PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13 Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = -1 Query: 333 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 575 S+ K + GLVVS+KMQK+VVV+V+ H +Y + V K+ AH++N+ +GD V + +RPLS K+W V++IL++AR Sbjct: 4 SRRKVLEGLVVSDKMQKTVVVSVETKSKHPIYRKLVISHKKYHAHNDNDDAKVGDLVEITETRPLSATKNWRVSKILERAR 84 The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bpback to top |