CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_DEHSB (30S ribosomal protein S17 OS=Dehalococcoides sp. (strain BAV1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.464e-13
Identity = 31/79 (39.24%), Postives = 54/79 (68.35%), Query Frame = -1
Query:  330 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 566
            K+ +G V+S+KM+K++VV +D +  H +Y +  +RT K++ HDE N+  IGD + +   RP+SK K+W +++I+ K  I
Sbjct:    6 KTRIGHVISDKMEKTIVVGIDVVKRHPLYKKTYRRTMKYLVHDEKNEAKIGDMIEIVECRPISKGKYWRLSKIITKGHI 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_VARPS (30S ribosomal protein S17 OS=Variovorax paradoxus (strain S110) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = -1
Query:  336 RPSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 581
            + S  ++++G VVS+K  K+V V V+R   H++Y + V +TSK+ AHDE  +  +GD + +  SRP+SK K+W V  +++KA
Sbjct:    5 KKSLKRTLIGKVVSDKRAKTVTVLVERRVKHELYGKIVAKTSKYHAHDEKGEYKLGDTIEITESRPISKTKNWVVTRLVEKA 86          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PROAC (30S ribosomal protein S17 OS=Propionibacterium acnes GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13
Identity = 35/83 (42.17%), Postives = 55/83 (66.27%), Query Frame = -1
Query:  333 RPSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 581
            R ++ K   GLVVS+KM K++ V V+    H +Y + + ++ +  AHDENN+  +GDRVR+  +RPLS  K W + EI++KA+
Sbjct:    8 RTTRRKVREGLVVSDKMNKTITVMVEDRVKHPLYGKVMTKSVRLKAHDENNEAGMGDRVRIMETRPLSATKRWRLVEIIEKAK 90          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_MYCUA (30S ribosomal protein S17 OS=Mycobacterium ulcerans (strain Agy99) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13
Identity = 37/84 (44.05%), Postives = 56/84 (66.67%), Query Frame = -1
Query:  333 RPS-QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 581
            +PS + K+ +G VVS+KMQK++VV ++    H +Y + ++ T K   HDE++   IGDRV L  +RPLS  K W + EIL+KA+
Sbjct:   37 KPSGRRKTRIGYVVSDKMQKTIVVELEDRVRHPLYGKIIRTTKKVKVHDEHSAAGIGDRVSLMETRPLSATKRWRLVEILEKAK 120          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_MYCPA (30S ribosomal protein S17 OS=Mycobacterium paratuberculosis GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13
Identity = 36/78 (46.15%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            K+ +G VVS+KMQK++VV ++    H +Y + ++ T K  AHDEN+   IGDRV L  +RP S  K W + EIL+KA+
Sbjct:   40 KTRIGYVVSDKMQKTIVVELEDRVKHPLYGKIIRTTKKVKAHDENSIAGIGDRVSLMETRPTSATKRWRLVEILEKAK 117          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BORHD (30S ribosomal protein S17 OS=Borrelia hermsii (strain DAH) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13
Identity = 32/78 (41.03%), Postives = 55/78 (70.51%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            K ++G VVS+KM K++VV + +   H +Y++Y+K + +  AHDE  +  +GD+VR+  SRP+SK K W + EIL++++
Sbjct:    7 KDLIGKVVSDKMSKTIVVEIVQRKMHPIYHKYLKVSRRVKAHDEREESRLGDKVRIIESRPISKEKRWMLVEILERSK 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ACTSZ (30S ribosomal protein S17 OS=Actinobacillus succinogenes (strain ATCC 55618 / 130Z) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.218e-13
Identity = 31/81 (38.27%), Postives = 54/81 (66.67%), Query Frame = -1
Query:  330 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 572
            ++++V G V+S+KM KS  +A++R   H +  ++++RT+K   HDENN+  +GD V +   RP+SK K W +  +++KA I
Sbjct:    4 KIRTVQGRVISDKMDKSFTIAIERKVKHPLLGKFIRRTTKLHVHDENNEARLGDWVEIKECRPVSKTKSWTLVRVVEKATI 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_UREU1 (30S ribosomal protein S17 OS=Ureaplasma urealyticum serovar 10 (strain ATCC 33699 / Western) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  333 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 575
            S+ K + GLVVS+KMQK+VVV+V+    H +Y + V    K+ AH++N+   +GD V +  +RPLS  K+W V++IL++AR
Sbjct:    4 SRRKVLEGLVVSDKMQKTVVVSVETKSKHPIYRKLVISHKKYHAHNDNDDAKVGDLVEITETRPLSATKNWRVSKILERAR 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_UREPA (30S ribosomal protein S17 OS=Ureaplasma parvum GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  333 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 575
            S+ K + GLVVS+KMQK+VVV+V+    H +Y + V    K+ AH++N+   +GD V +  +RPLS  K+W V++IL++AR
Sbjct:    4 SRRKVLEGLVVSDKMQKTVVVSVETKSKHPIYRKLVISHKKYHAHNDNDDAKVGDLVEITETRPLSATKNWRVSKILERAR 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_UREP2 (30S ribosomal protein S17 OS=Ureaplasma parvum serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 36/81 (44.44%), Postives = 56/81 (69.14%), Query Frame = -1
Query:  333 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 575
            S+ K + GLVVS+KMQK+VVV+V+    H +Y + V    K+ AH++N+   +GD V +  +RPLS  K+W V++IL++AR
Sbjct:    4 SRRKVLEGLVVSDKMQKTVVVSVETKSKHPIYRKLVISHKKYHAHNDNDDAKVGDLVEITETRPLSATKNWRVSKILERAR 84          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_DEHSB2.464e-1339.2430S ribosomal protein S17 OS=Dehalococcoides sp. (... [more]
RS17_VARPS3.218e-1340.2430S ribosomal protein S17 OS=Variovorax paradoxus ... [more]
RS17_PROAC3.218e-1342.1730S ribosomal protein S17 OS=Propionibacterium acn... [more]
RS17_MYCUA3.218e-1344.0530S ribosomal protein S17 OS=Mycobacterium ulceran... [more]
RS17_MYCPA3.218e-1346.1530S ribosomal protein S17 OS=Mycobacterium paratub... [more]
RS17_BORHD3.218e-1341.0330S ribosomal protein S17 OS=Borrelia hermsii (str... [more]
RS17_ACTSZ3.218e-1338.2730S ribosomal protein S17 OS=Actinobacillus succin... [more]
RS17_UREU14.203e-1344.4430S ribosomal protein S17 OS=Ureaplasma urealyticu... [more]
RS17_UREPA4.203e-1344.4430S ribosomal protein S17 OS=Ureaplasma parvum GN=... [more]
RS17_UREP24.203e-1344.4430S ribosomal protein S17 OS=Ureaplasma parvum ser... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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