CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_TREDE (30S ribosomal protein S17 OS=Treponema denticola GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 33/78 (42.31%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            +  VG+V S+KM K++VV V     HK+Y +YV  + K+ AHDE N  +IGD VR+   +P+SK K W + E++++A+
Sbjct:   13 REFVGIVTSDKMNKTIVVEVRTKKLHKLYKKYVSSSKKYKAHDEENTAHIGDTVRIVEHKPISKDKAWMLTEVIERAK 90          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SYNWW (30S ribosomal protein S17 OS=Syntrophomonas wolfei subsp. wolfei (strain Goettingen) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 32/75 (42.67%), Postives = 52/75 (69.33%), Query Frame = -1
Query:  333 VGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 557
            +G V S+KM K++ V+V+ +  H +Y + +K + K+ AHDENN+   GD V++  +RPLSK K W + EI++KA+
Sbjct:   12 IGTVSSDKMDKTITVSVETVKQHPLYKKTIKTSKKYKAHDENNEAKTGDIVKIMETRPLSKDKRWRLVEIVQKAK 86          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_MYCMM (30S ribosomal protein S17 OS=Mycobacterium marinum (strain ATCC BAA-535 / M) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 35/78 (44.87%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            K+ +G VVS+KMQK++VV ++    H +Y + ++ T K   HDE++   IGDRV L  +RPLS  K W + EIL+KA+
Sbjct:   42 KTRIGYVVSDKMQKTIVVELEDRVRHPLYGKIIRTTKKVKVHDEHSAAGIGDRVSLMETRPLSATKRWRLVEILEKAK 119          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_HAEDU (30S ribosomal protein S17 OS=Haemophilus ducreyi GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            ++++V G VVS+KM KS VVA++R   H +Y ++++RT+K   HDENN+  +GD V +   RP+SK K   +  +++KA
Sbjct:    4 KIRTVQGKVVSDKMDKSFVVAIERTVKHPLYGKFIRRTTKLHVHDENNEAKLGDVVEIQECRPVSKTKSHKLVRVVEKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_DEIGD (30S ribosomal protein S17 OS=Deinococcus geothermalis (strain DSM 11300) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 35/78 (44.87%), Postives = 51/78 (65.38%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            K+  G+VVS+K  K+V V V+R F H +Y + V R+ K+ AHDE N+  IGDRV +   RP+SK K W V  ++++ R
Sbjct:    3 KTFTGVVVSDKADKTVSVKVERRFMHPLYGKVVTRSKKYAAHDEQNEYRIGDRVEIIAVRPISKTKTWKVTRLIERPR 80          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_CORU7 (30S ribosomal protein S17 OS=Corynebacterium urealyticum (strain ATCC 43042 / DSM 7109) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 35/80 (43.75%), Postives = 54/80 (67.50%), Query Frame = -1
Query:  333 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 572
            Q K   G VVS+KM K++VV ++    H +Y + ++R S+  AHDE     +GDRVR++ +RPLSK KH+ + +I++KAR
Sbjct:   13 QKKVRTGYVVSDKMAKTIVVELEDRKQHALYGKIMRRNSRVKAHDEEGLAGVGDRVRIEETRPLSKDKHFRLLDIVEKAR 92          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BORT9 (30S ribosomal protein S17 OS=Borrelia turicatae (strain 91E135) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 31/78 (39.74%), Postives = 55/78 (70.51%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            K ++G VVS+KM K++VV + +   H +Y++Y+K + +  AHDE  +  +GD+V++  SRP+SK K W + E+L+K++
Sbjct:    7 KELIGKVVSDKMSKTIVVEIVQRKMHPIYHKYLKVSRRVKAHDEREESKLGDKVKIIESRPISKEKRWMLVEVLEKSK 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ACTPJ (30S ribosomal protein S17 OS=Actinobacillus pleuropneumoniae serotype 3 (strain JL03) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            ++++V G VVS+KM KS VVA++R   H +Y ++++RT+K   HDENN+  +GD V +   RP+SK K   +  +++KA
Sbjct:    4 KIRTVQGKVVSDKMDKSFVVAIERTVKHPLYGKFIRRTTKLHVHDENNEAKLGDVVEIKECRPVSKTKSHTLVRVVEKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ACTP7 (30S ribosomal protein S17 OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            ++++V G VVS+KM KS VVA++R   H +Y ++++RT+K   HDENN+  +GD V +   RP+SK K   +  +++KA
Sbjct:    4 KIRTVQGKVVSDKMDKSFVVAIERTVKHPLYGKFIRRTTKLHVHDENNEAKLGDVVEIKECRPVSKTKSHTLVRVVEKA 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ACTP2 (30S ribosomal protein S17 OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.203e-13
Identity = 33/79 (41.77%), Postives = 54/79 (68.35%), Query Frame = -1
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            ++++V G VVS+KM KS VVA++R   H +Y ++++RT+K   HDENN+  +GD V +   RP+SK K   +  +++KA
Sbjct:    4 KIRTVQGKVVSDKMDKSFVVAIERTVKHPLYGKFIRRTTKLHVHDENNEAKLGDVVEIKECRPVSKTKSHTLVRVVEKA 82          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_TREDE4.203e-1342.3130S ribosomal protein S17 OS=Treponema denticola G... [more]
RS17_SYNWW4.203e-1342.6730S ribosomal protein S17 OS=Syntrophomonas wolfei... [more]
RS17_MYCMM4.203e-1344.8730S ribosomal protein S17 OS=Mycobacterium marinum... [more]
RS17_HAEDU4.203e-1341.7730S ribosomal protein S17 OS=Haemophilus ducreyi G... [more]
RS17_DEIGD4.203e-1344.8730S ribosomal protein S17 OS=Deinococcus geotherma... [more]
RS17_CORU74.203e-1343.7530S ribosomal protein S17 OS=Corynebacterium ureal... [more]
RS17_BORT94.203e-1339.7430S ribosomal protein S17 OS=Borrelia turicatae (s... [more]
RS17_ACTPJ4.203e-1341.7730S ribosomal protein S17 OS=Actinobacillus pleuro... [more]
RS17_ACTP74.203e-1341.7730S ribosomal protein S17 OS=Actinobacillus pleuro... [more]
RS17_ACTP24.203e-1341.7730S ribosomal protein S17 OS=Actinobacillus pleuro... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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