CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ACISJ (30S ribosomal protein S17 OS=Acidovorax sp. (strain JS42) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.364e-13
Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = -1
Query:  336 RPSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 581
            + S  +++VG VVS+K  K+V V V+R   H +Y++ + ++SK+ AHDEN +  +GD + +  SRPLSK K+W    +++KA
Sbjct:    5 KKSLKRTLVGKVVSDKRAKTVTVLVERRVKHPIYDKIMIKSSKYHAHDENGEYKMGDTIEITESRPLSKTKNWVATRLVQKA 86          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_UNCTG (30S ribosomal protein S17 OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.223e-12
Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = -1
Query:  339 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 554
            G+VVS+K  K+  V+V+R + H +Y+R ++  SKF+ HDE N  ++GD V++  SRPLSK K W + E++ K
Sbjct:   12 GIVVSDKSNKTRQVSVERTYRHSLYDRVLRSKSKFIVHDEKNISHVGDTVKIMESRPLSKMKRWVLVEVVNK 83          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_OLICO (30S ribosomal protein S17 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.223e-12
Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = -1
Query:  339 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 566
            +++ G+VVS+K  K+VVV VDR F H +Y + ++R+  + AHDENN+   GD V +  S+PLSK K W V +  K+
Sbjct:    4 RTLQGVVVSDKQDKTVVVRVDRRFTHPIYKKTIRRSKNYHAHDENNEFKAGDTVWIVESKPLSKLKRWTVVQSEKE 79          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THETH (30S ribosomal protein S17 OS=Thermus thermophilus GN=rpsQ PE=1 SV=4)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = -1
Query:  330 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 566
            K + G+VVS+KMQK+V V V+R F H +Y + +KR+ K++AHD   +  +GD V +  SRP+SK K + V  +++  R+
Sbjct:    4 KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRM 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THET8 (30S ribosomal protein S17 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpsQ PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = -1
Query:  330 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 566
            K + G+VVS+KMQK+V V V+R F H +Y + +KR+ K++AHD   +  +GD V +  SRP+SK K + V  +++  R+
Sbjct:    4 KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRM 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THET2 (30S ribosomal protein S17 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpsQ PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = -1
Query:  330 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 566
            K + G+VVS+KMQK+V V V+R F H +Y + +KR+ K++AHD   +  +GD V +  SRP+SK K + V  +++  R+
Sbjct:    4 KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRM 82          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SPICI (30S ribosomal protein S17 OS=Spiroplasma citri GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 32/77 (41.56%), Postives = 55/77 (71.43%), Query Frame = -1
Query:  336 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 566
            K + G V+S+ ++K++ V V+   +H +Y + VK + K++AHDE NQ +IGD+V +  +RPLSK KH+ + E+++KA
Sbjct:    7 KVLQGRVISDNLKKTITVLVETYKNHPLYKKRVKYSKKYLAHDEQNQAHIGDKVSIMETRPLSKTKHFRLIEVIEKA 83          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RHOPT (30S ribosomal protein S17 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = -1
Query:  357 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 566
            +++ G+VVS+K  K++VV VDR F H +Y + ++R+  + AHDENNQ   GD V ++ S+P+SK K W V
Sbjct:    4 RTLQGVVVSDKQAKTIVVRVDRRFTHPIYKKTIRRSKNYHAHDENNQFKPGDMVWIEESKPISKLKRWTV 73          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RHOPA (30S ribosomal protein S17 OS=Rhodopseudomonas palustris GN=rpsQ PE=1 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = -1
Query:  357 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 566
            +++ G+VVS+K  K++VV VDR F H +Y + ++R+  + AHDENNQ   GD V ++ S+P+SK K W V
Sbjct:    4 RTLQGVVVSDKQAKTIVVRVDRRFTHPIYKKTIRRSKNYHAHDENNQFKPGDMVWIEESKPISKLKRWTV 73          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_MICLC (30S ribosomal protein S17 OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            K++ G+VVS+KM K++VV V     H +Y + +K + +  AHDE N   +GDRVR+  +RPLS  K W + E++++A+
Sbjct:   16 KALRGIVVSDKMDKTIVVEVQDRKKHSLYGKVMKTSKRVKAHDEENTAGVGDRVRIAETRPLSASKRWRLVEVVERAK 93          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_ACISJ9.364e-1340.2430S ribosomal protein S17 OS=Acidovorax sp. (strai... [more]
RS17_UNCTG1.223e-1244.4430S ribosomal protein S17 OS=Uncultured termite gr... [more]
RS17_OLICO1.223e-1244.7430S ribosomal protein S17 OS=Oligotropha carboxido... [more]
RS17_THETH1.597e-1241.7730S ribosomal protein S17 OS=Thermus thermophilus ... [more]
RS17_THET81.597e-1241.7730S ribosomal protein S17 OS=Thermus thermophilus ... [more]
RS17_THET21.597e-1241.7730S ribosomal protein S17 OS=Thermus thermophilus ... [more]
RS17_SPICI1.597e-1241.5630S ribosomal protein S17 OS=Spiroplasma citri GN=... [more]
RS17_RHOPT1.597e-1245.7130S ribosomal protein S17 OS=Rhodopseudomonas palu... [more]
RS17_RHOPA1.597e-1245.7130S ribosomal protein S17 OS=Rhodopseudomonas palu... [more]
RS17_MICLC1.597e-1241.0330S ribosomal protein S17 OS=Micrococcus luteus (s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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