CN186110
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_ACISJ (30S ribosomal protein S17 OS=Acidovorax sp. (strain JS42) GN=rpsQ PE=3 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 9.364e-13 Identity = 33/82 (40.24%), Postives = 55/82 (67.07%), Query Frame = -1 Query: 336 RPSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 581 + S +++VG VVS+K K+V V V+R H +Y++ + ++SK+ AHDEN + +GD + + SRPLSK K+W +++KA Sbjct: 5 KKSLKRTLVGKVVSDKRAKTVTVLVERRVKHPIYDKIMIKSSKYHAHDENGEYKMGDTIEITESRPLSKTKNWVATRLVQKA 86
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_UNCTG (30S ribosomal protein S17 OS=Uncultured termite group 1 bacterium phylotype Rs-D17 GN=rpsQ PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.223e-12 Identity = 32/72 (44.44%), Postives = 50/72 (69.44%), Query Frame = -1 Query: 339 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 554 G+VVS+K K+ V+V+R + H +Y+R ++ SKF+ HDE N ++GD V++ SRPLSK K W + E++ K Sbjct: 12 GIVVSDKSNKTRQVSVERTYRHSLYDRVLRSKSKFIVHDEKNISHVGDTVKIMESRPLSKMKRWVLVEVVNK 83
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_OLICO (30S ribosomal protein S17 OS=Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5) GN=rpsQ PE=3 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.223e-12 Identity = 34/76 (44.74%), Postives = 51/76 (67.11%), Query Frame = -1 Query: 339 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKK 566 +++ G+VVS+K K+VVV VDR F H +Y + ++R+ + AHDENN+ GD V + S+PLSK K W V + K+ Sbjct: 4 RTLQGVVVSDKQDKTVVVRVDRRFTHPIYKKTIRRSKNYHAHDENNEFKAGDTVWIVESKPLSKLKRWTVVQSEKE 79
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THETH (30S ribosomal protein S17 OS=Thermus thermophilus GN=rpsQ PE=1 SV=4) HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12 Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = -1 Query: 330 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 566 K + G+VVS+KMQK+V V V+R F H +Y + +KR+ K++AHD + +GD V + SRP+SK K + V +++ R+ Sbjct: 4 KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRM 82
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THET8 (30S ribosomal protein S17 OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=rpsQ PE=1 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12 Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = -1 Query: 330 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 566 K + G+VVS+KMQK+V V V+R F H +Y + +KR+ K++AHD + +GD V + SRP+SK K + V +++ R+ Sbjct: 4 KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRM 82
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THET2 (30S ribosomal protein S17 OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=rpsQ PE=1 SV=2) HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12 Identity = 33/79 (41.77%), Postives = 53/79 (67.09%), Query Frame = -1 Query: 330 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 566 K + G+VVS+KMQK+V V V+R F H +Y + +KR+ K++AHD + +GD V + SRP+SK K + V +++ R+ Sbjct: 4 KVLTGVVVSDKMQKTVTVLVERQFPHPLYGKVIKRSKKYLAHDPEEKYKLGDVVEIIESRPISKRKRFRVLRLVESGRM 82
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SPICI (30S ribosomal protein S17 OS=Spiroplasma citri GN=rpsQ PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12 Identity = 32/77 (41.56%), Postives = 55/77 (71.43%), Query Frame = -1 Query: 336 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 566 K + G V+S+ ++K++ V V+ +H +Y + VK + K++AHDE NQ +IGD+V + +RPLSK KH+ + E+++KA Sbjct: 7 KVLQGRVISDNLKKTITVLVETYKNHPLYKKRVKYSKKYLAHDEQNQAHIGDKVSIMETRPLSKTKHFRLIEVIEKA 83
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RHOPT (30S ribosomal protein S17 OS=Rhodopseudomonas palustris (strain TIE-1) GN=rpsQ PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12 Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = -1 Query: 357 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 566 +++ G+VVS+K K++VV VDR F H +Y + ++R+ + AHDENNQ GD V ++ S+P+SK K W V Sbjct: 4 RTLQGVVVSDKQAKTIVVRVDRRFTHPIYKKTIRRSKNYHAHDENNQFKPGDMVWIEESKPISKLKRWTV 73
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RHOPA (30S ribosomal protein S17 OS=Rhodopseudomonas palustris GN=rpsQ PE=1 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12 Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = -1 Query: 357 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 566 +++ G+VVS+K K++VV VDR F H +Y + ++R+ + AHDENNQ GD V ++ S+P+SK K W V Sbjct: 4 RTLQGVVVSDKQAKTIVVRVDRRFTHPIYKKTIRRSKNYHAHDENNQFKPGDMVWIEESKPISKLKRWTV 73
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_MICLC (30S ribosomal protein S17 OS=Micrococcus luteus (strain ATCC 4698 / IFO 3333 / NCTC 2665) GN=rpsQ PE=3 SV=1) HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12 Identity = 32/78 (41.03%), Postives = 52/78 (66.67%), Query Frame = -1 Query: 333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566 K++ G+VVS+KM K++VV V H +Y + +K + + AHDE N +GDRVR+ +RPLS K W + E++++A+ Sbjct: 16 KALRGIVVSDKMDKTIVVEVQDRKKHSLYGKVMKTSKRVKAHDEENTAGVGDRVRIAETRPLSASKRWRLVEVVERAK 93 The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bpback to top |