CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CN186110_ssr290 microsatellite CN186110_ssr290:290..304. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig2521 contig Csv1_Contig2521:41..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LACJO (30S ribosomal protein S17 OS=Lactobacillus johnsonii GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = -1
Query:  336 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 554
            G VVS+KM K++ V VD   +H VY + +K + K+ AHDENN+  IGD VR+  +RPLS  K + + +I+KK+
Sbjct:   15 GRVVSDKMDKTITVVVDTYKNHPVYKKRIKYSKKYYAHDENNEAKIGDTVRIMETRPLSHAKRYRLTKIVKKS 87          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LACGA (30S ribosomal protein S17 OS=Lactobacillus gasseri (strain ATCC 33323 / DSM 20243) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 34/73 (46.58%), Postives = 50/73 (68.49%), Query Frame = -1
Query:  336 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 554
            G VVS+KM K++ V VD   +H VY + +K + K+ AHDENN+  IGD VR+  +RPLS  K + + +I+KK+
Sbjct:   15 GRVVSDKMDKTITVVVDTYKNHPVYKKRIKYSKKYYAHDENNEAKIGDTVRIMETRPLSHAKRYRLTKIVKKS 87          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_COXBU (30S ribosomal protein S17 OS=Coxiella burnetii GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.597e-12
Identity = 34/78 (43.59%), Postives = 53/78 (67.95%), Query Frame = -1
Query:  336 MKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 569
            ++S++G VVSNKM  +VVV V+R   H  Y +++KR++K  AHD+ N+  IGD V +   RP+SK K W + +I ++A
Sbjct:    8 VRSLMGTVVSNKMNDTVVVRVERRVKHPKYGKFIKRSTKIHAHDKGNEGQIGDIVTIRECRPISKTKSWTLVKINERA 85          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_STRT2 (30S ribosomal protein S17 OS=Streptococcus thermophilus (strain ATCC BAA-250 / LMG 18311) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            +Q K++VG VVS+KM K++ V V+   +H VY + +  + K+ AHDENN    GD VR+  +RPLS  KH+ + E++++A I
Sbjct:    4 NQRKTLVGRVVSDKMDKTITVVVETKRNHPVYGKRINYSKKYKAHDENNVAKEGDIVRIMETRPLSATKHFRLVEVVEEAVI 85          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_STRT1 (30S ribosomal protein S17 OS=Streptococcus thermophilus (strain CNRZ 1066) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 35/82 (42.68%), Postives = 55/82 (67.07%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            +Q K++VG VVS+KM K++ V V+   +H VY + +  + K+ AHDENN    GD VR+  +RPLS  KH+ + E++++A I
Sbjct:    4 NQRKTLVGRVVSDKMDKTITVVVETKRNHPVYGKRINYSKKYKAHDENNVAKEGDIVRIMETRPLSATKHFRLVEVVEEAVI 85          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_PARUW (30S ribosomal protein S17 OS=Protochlamydia amoebophila (strain UWE25) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 35/66 (53.03%), Postives = 45/66 (68.18%), Query Frame = -1
Query:  357 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 554
            G+VVSNKMQK+VVV V+R F H  Y + V R  K+ AH+E+    IGD V++  +RPLSK K W V
Sbjct:   14 GIVVSNKMQKTVVVKVERTFAHPQYGKIVTRGKKYYAHNESGDLQIGDEVKIMETRPLSKLKRWRV 79          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LEUMM (30S ribosomal protein S17 OS=Leuconostoc mesenteroides subsp. mesenteroides (strain ATCC 8293 / NCDO 523) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = -1
Query:  330 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 554
            G VVS+KM K++ VAVD    H VY + VK T KF AHDENN    GD V++  +RPLS  KH+ + +I+++A I
Sbjct:   13 GRVVSDKMNKTITVAVDTYLTHDVYGKRVKYTKKFKAHDENNAAKQGDIVQIMETRPLSATKHFRLVKIVEEAVI 87          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LACLM (30S ribosomal protein S17 OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  330 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 572
            Q K   G VVS+KM K++ V V+   +H VY + +  + K+ AHDENN    GD VR+  +RPLSK KH+ + EI+++A I
Sbjct:    5 QRKVYQGRVVSDKMDKTITVVVETKRNHPVYGKRINYSKKYKAHDENNSAKTGDIVRIMETRPLSKDKHFRLVEIVEEAVI 85          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LACLA (30S ribosomal protein S17 OS=Lactococcus lactis subsp. lactis GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 36/81 (44.44%), Postives = 52/81 (64.20%), Query Frame = -1
Query:  330 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 572
            Q K   G VVS+KM K++ V V+   +H VY + +  + K+ AHDENN    GD VR+  +RPLSK KH+ + EI+++A I
Sbjct:    5 QRKVYQGRVVSDKMDKTITVVVETKRNHPVYGKRINYSKKYKAHDENNSAKTGDIVRIMETRPLSKDKHFRLVEIVEEAVI 85          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_EXISA (30S ribosomal protein S17 OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 35/79 (44.30%), Postives = 52/79 (65.82%), Query Frame = -1
Query:  330 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 566
            K   G VVS+KM K++VVAV+    HK+Y + V  T K+ AHDENN   +GD VR+  +RPLSK K + +  +++++ I
Sbjct:    7 KVFTGRVVSDKMDKTIVVAVETKVRHKLYGKRVNYTKKYKAHDENNVAKVGDIVRIAETRPLSKDKRFRLVTVVEESVI 85          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_LACJO1.597e-1246.5830S ribosomal protein S17 OS=Lactobacillus johnson... [more]
RS17_LACGA1.597e-1246.5830S ribosomal protein S17 OS=Lactobacillus gasseri... [more]
RS17_COXBU1.597e-1243.5930S ribosomal protein S17 OS=Coxiella burnetii GN=... [more]
RS17_STRT22.086e-1242.6830S ribosomal protein S17 OS=Streptococcus thermop... [more]
RS17_STRT12.086e-1242.6830S ribosomal protein S17 OS=Streptococcus thermop... [more]
RS17_PARUW2.086e-1253.0330S ribosomal protein S17 OS=Protochlamydia amoebo... [more]
RS17_LEUMM2.086e-1249.3330S ribosomal protein S17 OS=Leuconostoc mesentero... [more]
RS17_LACLM2.086e-1244.4430S ribosomal protein S17 OS=Lactococcus lactis su... [more]
RS17_LACLA2.086e-1244.4430S ribosomal protein S17 OS=Lactococcus lactis su... [more]
RS17_EXISA2.086e-1244.3030S ribosomal protein S17 OS=Exiguobacterium sp. (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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