CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_CORA7 (30S ribosomal protein S17 OS=Corynebacterium aurimucosum (strain ATCC 700975 / DSM 44827 / CN-1) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 34/78 (43.59%), Postives = 52/78 (66.67%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            K+  G+VVS+KM K++VV ++    H +Y + ++   K  AHDEN    IGDRV +  +RPLSK KH+ + EI++KA+
Sbjct:   16 KTRTGIVVSDKMNKTIVVELEDRKQHALYGKIMRTNKKVKAHDENETAGIGDRVLIAETRPLSKDKHFRLVEIVEKAK 93          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BORBZ (30S ribosomal protein S17 OS=Borrelia burgdorferi (strain ZS7) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            K ++G VVS+KM K++VV + +   H +Y++Y+K + K  AHDE     +GD+V++   RP+SK K W++ E+L+K +
Sbjct:    7 KELIGKVVSDKMSKTIVVEIVQRKMHPIYHKYLKVSKKVKAHDEKEVSKVGDKVKIIEVRPISKDKRWSLVEVLEKLK 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BORBU (30S ribosomal protein S17 OS=Borrelia burgdorferi GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            K ++G VVS+KM K++VV + +   H +Y++Y+K + K  AHDE     +GD+V++   RP+SK K W++ E+L+K +
Sbjct:    7 KELIGKVVSDKMSKTIVVEIVQRKMHPIYHKYLKVSKKVKAHDEKEVSKVGDKVKIIEVRPISKDKRWSLVEVLEKLK 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BORAP (30S ribosomal protein S17 OS=Borrelia afzelii (strain PKo) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 2.086e-12
Identity = 31/78 (39.74%), Postives = 53/78 (67.95%), Query Frame = -1
Query:  333 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 566
            K ++G VVS+KM K++VV + +   H +Y++Y+K + K  AHDE     +GD+V++   RP+SK K W++ E+L+K +
Sbjct:    7 KELIGRVVSDKMSKTIVVEIVQRKMHPIYHKYLKVSKKVKAHDEKEVSKVGDKVKIIEVRPISKDKRWSLVEVLEKLK 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_POLNA (30S ribosomal protein S17 OS=Polaromonas naphthalenivorans (strain CJ2) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.725e-12
Identity = 33/84 (39.29%), Postives = 54/84 (64.29%), Query Frame = -1
Query:  330 RPSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 581
            + S  ++++G VVS+K  K+V V V+R   H++Y + V  +SK+ AHDE  +   GD + +  SRP+SK K+W V  +++KA I
Sbjct:    5 KKSLKRTLIGKVVSDKRAKTVTVLVERRVKHELYGKIVSLSSKYHAHDEKGEFKTGDVIEITESRPISKTKNWVVTRLVQKAEI 88          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_NITWN (30S ribosomal protein S17 OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.725e-12
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = -1
Query:  357 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 566
            +++ G+VVS+K  K+VVV VDR F H +Y + ++R+  + AHDENN+   GD V ++ S+P+SK K W V
Sbjct:    4 RTLQGVVVSDKQAKTVVVRVDRRFTHPIYKKTIRRSKNYHAHDENNEFKPGDMVWIEESKPISKLKRWTV 73          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LAWIP (30S ribosomal protein S17 OS=Lawsonia intracellularis (strain PHE/MN1-00) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.725e-12
Identity = 32/84 (38.10%), Postives = 54/84 (64.29%), Query Frame = -1
Query:  336 VIRPSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 587
            +I     + +VG V+S+K  K+++V V+ L  H +  ++++   KF AHD  N+C+IGD V++   RPLS++K W +  IL+KA
Sbjct:    4 IIAKCNGRVLVGTVISDKNDKTIIVHVETLVKHPLLKKFIRHRKKFTAHDPLNECSIGDTVKIIEFRPLSRNKRWHLVAILEKA 87          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_DEHE1 (30S ribosomal protein S17 OS=Dehalococcoides ethenogenes (strain 195) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.725e-12
Identity = 30/79 (37.97%), Postives = 51/79 (64.56%), Query Frame = -1
Query:  330 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 566
            K+ +G V+S++M+K++VV +D    H +Y +  +RT K++ HDE N+  IGD + +   RP+SK K+W +  I+ K  I
Sbjct:    5 KTRIGHVISDRMEKTIVVGIDVAKRHPLYKKTYRRTMKYLVHDEKNEAKIGDMIEIVKCRPISKGKYWRLNRIITKGHI 83          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RHOPS (30S ribosomal protein S17 OS=Rhodopseudomonas palustris (strain BisB5) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 32/70 (45.71%), Postives = 50/70 (71.43%), Query Frame = -1
Query:  357 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 566
            +++ G+VVS+K  K+VVV VDR F H +Y + ++R+  + AHDEN+Q + GD V ++ S+P+SK K W V
Sbjct:    4 RTLQGVVVSDKQAKTVVVRVDRRFTHPIYKKTIRRSKNYHAHDENDQFHPGDMVWIEESKPISKLKRWTV 73          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RHOP2 (30S ribosomal protein S17 OS=Rhodopseudomonas palustris (strain HaA2) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 32/70 (45.71%), Postives = 50/70 (71.43%), Query Frame = -1
Query:  357 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 566
            +++ G+VVS+K  K+VVV VDR F H +Y + ++R+  + AHDEN+Q + GD V ++ S+P+SK K W V
Sbjct:    4 RTLQGVVVSDKQAKTVVVRVDRRFTHPIYKKTIRRSKNYHAHDENDQFHPGDMVWIEESKPISKLKRWTV 73          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_CORA72.086e-1243.5930S ribosomal protein S17 OS=Corynebacterium aurim... [more]
RS17_BORBZ2.086e-1239.7430S ribosomal protein S17 OS=Borrelia burgdorferi ... [more]
RS17_BORBU2.086e-1239.7430S ribosomal protein S17 OS=Borrelia burgdorferi ... [more]
RS17_BORAP2.086e-1239.7430S ribosomal protein S17 OS=Borrelia afzelii (str... [more]
RS17_POLNA2.725e-1239.2930S ribosomal protein S17 OS=Polaromonas naphthale... [more]
RS17_NITWN2.725e-1245.7130S ribosomal protein S17 OS=Nitrobacter winograds... [more]
RS17_LAWIP2.725e-1238.1030S ribosomal protein S17 OS=Lawsonia intracellula... [more]
RS17_DEHE12.725e-1237.9730S ribosomal protein S17 OS=Dehalococcoides ethen... [more]
RS17_RHOPS3.558e-1245.7130S ribosomal protein S17 OS=Rhodopseudomonas palu... [more]
RS17_RHOP23.558e-1245.7130S ribosomal protein S17 OS=Rhodopseudomonas palu... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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