CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RHOFD (30S ribosomal protein S17 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 31/84 (36.90%), Postives = 55/84 (65.48%), Query Frame = -1
Query:  330 RPSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 581
            + S  +++VG VVS+K  K+V V ++R   H++Y + V ++SK+ AHDE  +  +GD + +  SRP+SK K+W    +++KA +
Sbjct:    5 KKSLKRTLVGKVVSDKRAKTVTVLIERRVKHELYGKIVGKSSKYHAHDETGEYKLGDIIEITESRPISKTKNWVATRLVQKAAV 88          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LISW6 (30S ribosomal protein S17 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            +Q K   G VVS+KM K++ V V+    H +Y + VK + KF AHDENN    GD VR+  +RPLS  KH+ + E++++A I
Sbjct:    5 NQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVI 86          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LISMO (30S ribosomal protein S17 OS=Listeria monocytogenes GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            +Q K   G VVS+KM K++ V V+    H +Y + VK + KF AHDENN    GD VR+  +RPLS  KH+ + E++++A I
Sbjct:    5 NQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVI 86          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LISMH (30S ribosomal protein S17 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            +Q K   G VVS+KM K++ V V+    H +Y + VK + KF AHDENN    GD VR+  +RPLS  KH+ + E++++A I
Sbjct:    5 NQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVI 86          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LISMF (30S ribosomal protein S17 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            +Q K   G VVS+KM K++ V V+    H +Y + VK + KF AHDENN    GD VR+  +RPLS  KH+ + E++++A I
Sbjct:    5 NQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVI 86          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LISMC (30S ribosomal protein S17 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            +Q K   G VVS+KM K++ V V+    H +Y + VK + KF AHDENN    GD VR+  +RPLS  KH+ + E++++A I
Sbjct:    5 NQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVI 86          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LISIN (30S ribosomal protein S17 OS=Listeria innocua GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            +Q K   G VVS+KM K++ V V+    H +Y + VK + KF AHDENN    GD VR+  +RPLS  KH+ + E++++A I
Sbjct:    5 NQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVI 86          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BRAJA (30S ribosomal protein S17 OS=Bradyrhizobium japonicum GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = -1
Query:  357 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 566
            +++ G+VVS+K  K+VVV VDR F H +Y + ++R+  + AHDENN+   GD V ++ S+P+SK K W V
Sbjct:    4 RTLQGVVVSDKTAKTVVVRVDRRFTHPIYKKTIRRSKNYHAHDENNEFKPGDMVWIEESKPISKLKRWVV 73          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BACLD (30S ribosomal protein S17 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12
Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = -1
Query:  330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575
            +Q K   G VVS+KM K++ V V+    H +Y + VK + KF AHDENNQ  IGD V++  +RPLS  K + + E++++A I
Sbjct:    5 NQRKVYQGRVVSDKMDKTITVVVETYKKHSLYGKRVKYSKKFKAHDENNQAKIGDIVKIMETRPLSATKRFRLVEVVEEAVI 86          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THISH (30S ribosomal protein S17 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 4.647e-12
Identity = 29/77 (37.66%), Postives = 53/77 (68.83%), Query Frame = -1
Query:  336 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 566
            ++V+G VVS+KM K+  + ++R   H +Y +Y++R++K   HDE N+  +GD+V +   RP+SK K + + ++L+KA
Sbjct:    9 RAVIGRVVSDKMDKTRTILIERKVRHPLYGKYIRRSTKLHVHDEGNEARMGDKVMVQECRPMSKTKTFRLVKVLEKA 85          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_RHOFD3.558e-1236.9030S ribosomal protein S17 OS=Rhodoferax ferrireduc... [more]
RS17_LISW63.558e-1243.9030S ribosomal protein S17 OS=Listeria welshimeri s... [more]
RS17_LISMO3.558e-1243.9030S ribosomal protein S17 OS=Listeria monocytogene... [more]
RS17_LISMH3.558e-1243.9030S ribosomal protein S17 OS=Listeria monocytogene... [more]
RS17_LISMF3.558e-1243.9030S ribosomal protein S17 OS=Listeria monocytogene... [more]
RS17_LISMC3.558e-1243.9030S ribosomal protein S17 OS=Listeria monocytogene... [more]
RS17_LISIN3.558e-1243.9030S ribosomal protein S17 OS=Listeria innocua GN=r... [more]
RS17_BRAJA3.558e-1245.7130S ribosomal protein S17 OS=Bradyrhizobium japoni... [more]
RS17_BACLD3.558e-1243.9030S ribosomal protein S17 OS=Bacillus licheniformi... [more]
RS17_THISH4.647e-1237.6630S ribosomal protein S17 OS=Thioalkalivibrio sp. ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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