CN186110
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RHOFD (30S ribosomal protein S17 OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12 Identity = 31/84 (36.90%), Postives = 55/84 (65.48%), Query Frame = -1 Query: 330 RPSQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 581 + S +++VG VVS+K K+V V ++R H++Y + V ++SK+ AHDE + +GD + + SRP+SK K+W +++KA + Sbjct: 5 KKSLKRTLVGKVVSDKRAKTVTVLIERRVKHELYGKIVGKSSKYHAHDETGEYKLGDIIEITESRPISKTKNWVATRLVQKAAV 88
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LISW6 (30S ribosomal protein S17 OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12 Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -1 Query: 330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575 +Q K G VVS+KM K++ V V+ H +Y + VK + KF AHDENN GD VR+ +RPLS KH+ + E++++A I Sbjct: 5 NQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVI 86
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LISMO (30S ribosomal protein S17 OS=Listeria monocytogenes GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12 Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -1 Query: 330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575 +Q K G VVS+KM K++ V V+ H +Y + VK + KF AHDENN GD VR+ +RPLS KH+ + E++++A I Sbjct: 5 NQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVI 86
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LISMH (30S ribosomal protein S17 OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12 Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -1 Query: 330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575 +Q K G VVS+KM K++ V V+ H +Y + VK + KF AHDENN GD VR+ +RPLS KH+ + E++++A I Sbjct: 5 NQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVI 86
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LISMF (30S ribosomal protein S17 OS=Listeria monocytogenes serotype 4b (strain F2365) GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12 Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -1 Query: 330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575 +Q K G VVS+KM K++ V V+ H +Y + VK + KF AHDENN GD VR+ +RPLS KH+ + E++++A I Sbjct: 5 NQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVI 86
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LISMC (30S ribosomal protein S17 OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12 Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -1 Query: 330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575 +Q K G VVS+KM K++ V V+ H +Y + VK + KF AHDENN GD VR+ +RPLS KH+ + E++++A I Sbjct: 5 NQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVI 86
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_LISIN (30S ribosomal protein S17 OS=Listeria innocua GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12 Identity = 36/82 (43.90%), Postives = 52/82 (63.41%), Query Frame = -1 Query: 330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575 +Q K G VVS+KM K++ V V+ H +Y + VK + KF AHDENN GD VR+ +RPLS KH+ + E++++A I Sbjct: 5 NQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSKKFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVI 86
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BRAJA (30S ribosomal protein S17 OS=Bradyrhizobium japonicum GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12 Identity = 32/70 (45.71%), Postives = 49/70 (70.00%), Query Frame = -1 Query: 357 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 566 +++ G+VVS+K K+VVV VDR F H +Y + ++R+ + AHDENN+ GD V ++ S+P+SK K W V Sbjct: 4 RTLQGVVVSDKTAKTVVVRVDRRFTHPIYKKTIRRSKNYHAHDENNEFKPGDMVWIEESKPISKLKRWVV 73
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BACLD (30S ribosomal protein S17 OS=Bacillus licheniformis (strain DSM 13 / ATCC 14580) GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 3.558e-12 Identity = 36/82 (43.90%), Postives = 53/82 (64.63%), Query Frame = -1 Query: 330 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKARI 575 +Q K G VVS+KM K++ V V+ H +Y + VK + KF AHDENNQ IGD V++ +RPLS K + + E++++A I Sbjct: 5 NQRKVYQGRVVSDKMDKTITVVVETYKKHSLYGKRVKYSKKFKAHDENNQAKIGDIVKIMETRPLSATKRFRLVEVVEEAVI 86
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_THISH (30S ribosomal protein S17 OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=rpsQ PE=3 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 4.647e-12 Identity = 29/77 (37.66%), Postives = 53/77 (68.83%), Query Frame = -1 Query: 336 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 566 ++V+G VVS+KM K+ + ++R H +Y +Y++R++K HDE N+ +GD+V + RP+SK K + + ++L+KA Sbjct: 9 RAVIGRVVSDKMDKTRTILIERKVRHPLYGKYIRRSTKLHVHDEGNEARMGDKVMVQECRPMSKTKTFRLVKVLEKA 85 The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bpback to top |