CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_FRATH (30S ribosomal protein S17 OS=Francisella tularensis subsp. holarctica (strain LVS) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.035e-11
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = -1
Query:  333 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 554
            G V S  M K+VVV  +R   H +Y ++VK+T+K+  HDENN+C  GD ++   +RP SK K W + +I+ + +
Sbjct:   10 GKVSSVAMDKTVVVRAERYVKHPLYGKFVKKTTKYYVHDENNECKEGDVIKFKETRPYSKTKKWCLVDIIHREK 83          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_FRATF (30S ribosomal protein S17 OS=Francisella tularensis subsp. holarctica (strain FTNF002-00 / FTA) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.035e-11
Identity = 30/74 (40.54%), Postives = 47/74 (63.51%), Query Frame = -1
Query:  333 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKAR 554
            G V S  M K+VVV  +R   H +Y ++VK+T+K+  HDENN+C  GD ++   +RP SK K W + +I+ + +
Sbjct:   10 GKVSSVAMDKTVVVRAERYVKHPLYGKFVKKTTKYYVHDENNECKEGDVIKFKETRPYSKTKKWCLVDIIHREK 83          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BRASO (30S ribosomal protein S17 OS=Bradyrhizobium sp. (strain ORS278) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.035e-11
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = -1
Query:  357 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 566
            +++ G+VVS+K  K+VVV VDR F H +Y + ++R+  + AHDE+N+   GD V ++ S+P+SK K W V
Sbjct:    4 RTLQGVVVSDKQAKTVVVRVDRRFTHPIYKKTIRRSKNYHAHDESNEFKPGDMVWIEESKPISKLKRWTV 73          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BRASB (30S ribosomal protein S17 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.035e-11
Identity = 31/70 (44.29%), Postives = 49/70 (70.00%), Query Frame = -1
Query:  357 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 566
            +++ G+VVS+K  K+VVV VDR F H +Y + ++R+  + AHDE+N+   GD V ++ S+P+SK K W V
Sbjct:    4 RTLQGVVVSDKQAKTVVVRVDRRFTHPIYKKTIRRSKNYHAHDESNEFKPGDMVWIEESKPISKLKRWTV 73          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_BACST (30S ribosomal protein S17 OS=Bacillus stearothermophilus GN=rpsQ PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 1.035e-11
Identity = 34/80 (42.50%), Postives = 53/80 (66.25%), Query Frame = -1
Query:  336 SQMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 575
            +Q K  VG VVS+KM K++ V V+    H +Y + VK + K+ AHDE+N+  +GD V++  +RPLS  K + + EI++KA
Sbjct:    5 NQRKVYVGRVVSDKMDKTITVLVETYKKHPLYGKRVKYSKKYKAHDEHNEAKVGDIVKIMETRPLSATKRFRLVEIVEKA 84          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_AGRT5 (30S ribosomal protein S17 OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.035e-11
Identity = 32/66 (48.48%), Postives = 46/66 (69.70%), Query Frame = -1
Query:  357 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 554
            G+VVS+K +K+VVV V+R F H +  + V+R+ K+ AHDENNQ  +GD V ++   P+SK K W V
Sbjct:    8 GVVVSDKNEKTVVVRVERRFAHPLMQKTVRRSKKYKAHDENNQYKVGDVVSIEECAPISKDKRWTV 73          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RR17_CYAPA (Cyanelle 30S ribosomal protein S17 OS=Cyanophora paradoxa GN=rps17 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 1.035e-11
Identity = 28/74 (37.84%), Postives = 48/74 (64.86%), Query Frame = -1
Query:  345 KSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEIL 566
            K  VG+V+ N  +K+V+VAV+    H  Y++ + RT K+  HD ++ C +GD V++   +P+SK K W ++E+L
Sbjct:    4 KERVGVVIRNPQEKTVIVAVNNRVRHNKYSKIIIRTKKYQVHDHSHICKLGDEVKISEVKPISKTKRWIISEVL 77          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RHIME (30S ribosomal protein S17 OS=Rhizobium meliloti GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 32/66 (48.48%), Postives = 44/66 (66.67%), Query Frame = -1
Query:  357 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 554
            G VVS+K  K+VVV V+R F H +  + V+R+ K+ AHDENNQ  +GD V ++   P+SK K W V
Sbjct:    8 GTVVSDKNDKTVVVRVERRFAHPILQKTVRRSKKYKAHDENNQFKVGDLVSIEECAPISKDKRWTV 73          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RHILW (30S ribosomal protein S17 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 32/66 (48.48%), Postives = 45/66 (68.18%), Query Frame = -1
Query:  357 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 554
            G+VV +K +K+VVV V+R F H +  + V+R+ K+ AHDENNQ  IGD V ++   P+SK K W V
Sbjct:    8 GVVVGDKNEKTVVVRVERRFAHPLLQKTVRRSKKYKAHDENNQYKIGDTVSIEECAPISKDKRWTV 73          
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_RHILO (30S ribosomal protein S17 OS=Rhizobium loti GN=rpsQ PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.352e-11
Identity = 33/66 (50.00%), Postives = 45/66 (68.18%), Query Frame = -1
Query:  357 GLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAV 554
            G VVS+K +K+VVV V+R F H V  + V+ T K+ AHDENN   +GD+V +  S+P+SK K W V
Sbjct:    8 GTVVSDKNEKTVVVKVERRFTHPVMKKTVRMTKKYKAHDENNAHKVGDQVFIQESKPISKDKRWIV 73          
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_FRATH1.035e-1140.5430S ribosomal protein S17 OS=Francisella tularensi... [more]
RS17_FRATF1.035e-1140.5430S ribosomal protein S17 OS=Francisella tularensi... [more]
RS17_BRASO1.035e-1144.2930S ribosomal protein S17 OS=Bradyrhizobium sp. (s... [more]
RS17_BRASB1.035e-1144.2930S ribosomal protein S17 OS=Bradyrhizobium sp. (s... [more]
RS17_BACST1.035e-1142.5030S ribosomal protein S17 OS=Bacillus stearothermo... [more]
RS17_AGRT51.035e-1148.4830S ribosomal protein S17 OS=Agrobacterium tumefac... [more]
RR17_CYAPA1.035e-1137.84Cyanelle 30S ribosomal protein S17 OS=Cyanophora p... [more]
RS17_RHIME1.352e-1148.4830S ribosomal protein S17 OS=Rhizobium meliloti GN... [more]
RS17_RHILW1.352e-1148.4830S ribosomal protein S17 OS=Rhizobium leguminosar... [more]
RS17_RHILO1.352e-1150.0030S ribosomal protein S17 OS=Rhizobium loti GN=rps... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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