CN186110

Overview
NameCN186110
Unique NameCN186110
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length839
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SALTY (30S ribosomal protein S17 OS=Salmonella typhimurium GN=rpsQ PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SALTI (30S ribosomal protein S17 OS=Salmonella typhi GN=rpsQ PE=3 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SALSV (30S ribosomal protein S17 OS=Salmonella schwarzengrund (strain CVM19633) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SALPK (30S ribosomal protein S17 OS=Salmonella paratyphi A (strain AKU_12601) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SALPC (30S ribosomal protein S17 OS=Salmonella paratyphi C (strain RKS4594) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SALPB (30S ribosomal protein S17 OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SALPA (30S ribosomal protein S17 OS=Salmonella paratyphi A GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SALNS (30S ribosomal protein S17 OS=Salmonella newport (strain SL254) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SALHS (30S ribosomal protein S17 OS=Salmonella heidelberg (strain SL476) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
[Close]
BLAST of CN186110 vs. ExPASy Swiss-Prot
Match: RS17_SALG2 (30S ribosomal protein S17 OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=rpsQ PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.674e-17
Identity = 37/79 (46.84%), Postives = 58/79 (73.42%), Query Frame = -1 
Query:  336 QMKSVVGLVVSNKMQKSVVVAVDRLFHHKVYNRYVKRTSKFMAHDENNQCNIGDRVRLDPSRPLSKHKHWAVAEILKKA 572
            +++++ G VVS+KM+KS+VVA++R   H +Y +++KRT+K   HDENN+C IGD V +   RPLSK K W +  +++KA
Sbjct:    4 KIRTLQGRVVSDKMEKSIVVAIERFVKHPIYGKFIKRTTKMHVHDENNECGIGDVVEIRECRPLSKTKSWTLVRVVEKA 82
The following BLAST results are available for this feature:
BLAST of CN186110 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RS17_SALTY3.674e-1746.8430S ribosomal protein S17 OS=Salmonella typhimuriu... [more]
RS17_SALTI3.674e-1746.8430S ribosomal protein S17 OS=Salmonella typhi GN=r... [more]
RS17_SALSV3.674e-1746.8430S ribosomal protein S17 OS=Salmonella schwarzeng... [more]
RS17_SALPK3.674e-1746.8430S ribosomal protein S17 OS=Salmonella paratyphi ... [more]
RS17_SALPC3.674e-1746.8430S ribosomal protein S17 OS=Salmonella paratyphi ... [more]
RS17_SALPB3.674e-1746.8430S ribosomal protein S17 OS=Salmonella paratyphi ... [more]
RS17_SALPA3.674e-1746.8430S ribosomal protein S17 OS=Salmonella paratyphi ... [more]
RS17_SALNS3.674e-1746.8430S ribosomal protein S17 OS=Salmonella newport (s... [more]
RS17_SALHS3.674e-1746.8430S ribosomal protein S17 OS=Salmonella heidelberg... [more]
RS17_SALG23.674e-1746.8430S ribosomal protein S17 OS=Salmonella gallinarum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002G05_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002G05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186110 ID=CN186110; Name=CN186110; organism=Citrus sinensis; type=EST; length=839bp
CAATTAGAGAATAATACCTCCATTTCATTTAGCATCAAACAATCAAAAGT
ACATCGGTCTAATTAAGCATAAAACAATCATAGGTACATCTGTCTAAAGG
TTGACAAAAATTCAACACAACTAGAAGCATAACTCATTCCAAAACGGCAA
CATTAAACCGACATGTTTTATTGCTACAAGCAATTCTTGGAAACTGCTAC
CTAGGTCCAAGTCTTCTCACTTTCTGTATGTCCCCGTAAAGCTTAACCTT
AAGATGATGAAACCAGTGCTTCAGTCTGGGTATTTGAAACAGCAGCAGCA
GCAGCATTATCCGCTGAGGGTGGTACATAGATACGTGCTTTCTTTAGAAT
TTCGGCAACAGCCCAATGCTTATGCTTGCTTAACGGTCTAGAAGGATCCA
ACCTAACTCGGTCACCGATGTTGCATTGATTGTTCTCGTCGTGGGCCATG
AATTTGGAGGTTCGTTTGACATACCGATTGTAAACCTTGTGGTGAAAGAG
TCTGTCAACGGCCACCACTACTGATTTTTGCATCTTGTTTGACACTACCA
ATCCCACCACCGACTTCATTTGTGACGGCCTGATTACTATGCTTCAACAG
TGATACTACAGTGACGGCAGATGCTGACGGAGGTCGACGGCGCACGACAA
TAACTTGTGGTGAGGCGGCGGCAGGGGTTCAGGGGGCGGTTAGTGTCTGA
GTTGAGTGAAATTGGATTTCGTTTATTGTTGCTTTAAACTCATCGACTGT
GTTTGTGACTAAGGTGAGAAACTTGAAGCTAAAAGGTTGGTACTTGCTAA
GATAGCTCTAGCGAACGGACCTACCGCCGTAGCTCACCG
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