CN186103

Overview
NameCN186103
Unique NameCN186103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_MOUSE (60S ribosomal protein L17 OS=Mus musculus GN=Rpl17 PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.466e-37
Identity = 77/112 (68.75%), Postives = 90/112 (80.36%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   41 IRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_BOVIN (60S ribosomal protein L17 OS=Bos taurus GN=RPL17 PE=2 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 2.466e-37
Identity = 77/112 (68.75%), Postives = 90/112 (80.36%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            + KA +YL+DV   KQ +PF R+ GGVGR AQAK      QGRWP KSA+F+L +LKNAESNAE+KGLDVD+L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   41 IRKATKYLKDVTLKKQCVPFRRYNGGVGRCAQAKQWGWT-QGRWPKKSAEFLLHMLKNAESNAELKGLDVDSLVIEHIQVNKAPKMRRRTYRAHGRINPYMSSPCHIEMILT 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_PECGU (60S ribosomal protein L17 OS=Pectinaria gouldii GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 4.206e-37
Identity = 76/111 (68.47%), Postives = 89/111 (80.18%), Query Frame = -3
Query:  388 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 720
            L KA+ YL +V+ HKQ IPF R  GGVGR AQAKN +   QGRWP KS +F+L LLKNAESNAE++GLDVD+L ++H+ V+ A K RRRTYRAHGRINPYMSSPCHIEL L
Sbjct:   41 LHKARSYLSNVVEHKQCIPFRRHKGGVGRCAQAKNFNTT-QGRWPKKSCEFMLQLLKNAESNAELRGLDVDSLVVAHVSVDAAAKMRRRTYRAHGRINPYMSSPCHIELCL 150          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_IXOSC (60S ribosomal protein L17 OS=Ixodes scapularis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 153.295 bits (386), Expect = 1.224e-36
Identity = 77/112 (68.75%), Postives = 90/112 (80.36%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            L +A+RYL++V+A K+ +PF RF GGVGR AQAK      QGRWP KSA+F+  LL+NAESNA+ KGLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:   41 LRRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAK-AFGCTQGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHIEVILS 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_ARGMO (60S ribosomal protein L17 OS=Argas monolakensis GN=RpL17 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.087e-36
Identity = 76/112 (67.86%), Postives = 90/112 (80.36%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            L +A+RYL++V+A K+ +PF RF GGVGR AQAK      QGRWP KSA+F+  LL+NAESNA+ KGLDVD L I HIQVN+A K RRRTYRAHGRINPYMSSPCH+E+ LS
Sbjct:   41 LRRAQRYLKNVIAKKEIVPFRRFNGGVGRKAQAKAWGCT-QGRWPKKSAEFLWQLLRNAESNADYKGLDVDRLVIDHIQVNRAPKMRRRTYRAHGRINPYMSSPCHVEVILS 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_CAEEL (60S ribosomal protein L17 OS=Caenorhabditis elegans GN=rpl-17 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.561e-36
Identity = 75/112 (66.96%), Postives = 86/112 (76.79%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            L +A+ +L  V  HK+ +PF RF GG+GR AQ K  +   QGRWPVKSA F+LDLLKNAESNAE KGLDVD L I HI V +A K RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   43 LRRAQAFLNHVKEHKEIVPFRRFHGGIGRAAQTKQWNTT-QGRWPVKSADFLLDLLKNAESNAEYKGLDVDHLVIEHINVQRAAKLRRRTYRAHGRINPYMSSPCHIEVILA 153          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_LONON (60S ribosomal protein L17 OS=Lonomia obliqua GN=RpL17 PE=2 SV=1)

HSP 1 Score: 150.599 bits (379), Expect = 7.932e-36
Identity = 81/132 (61.36%), Postives = 92/132 (69.70%), Query Frame = -3
Query:  325 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSK 720
            L +A RYL++V   K+ IPF RF GGVGR AQAK +    QGRWP KSA+F L LL+NAESNA+ KGLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ LS           T  A +K K
Sbjct:   41 LRRAVRYLKNVTEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFPLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVALSEREDAVSRAAPTDDAPAKKK 171          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_PHLPP (60S ribosomal protein L17 OS=Phlebotomus papatasi GN=RpL17 PE=2 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.767e-35
Identity = 74/112 (66.07%), Postives = 90/112 (80.36%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            L +A+R+L++V+  K+ +PF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ KGLDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ L+
Sbjct:   41 LRRAQRFLKNVVEKKECVPFRRFNGGVGRCAQAK-QWKTTQGRWPKKSAEFLLQLLRNAESNADYKGLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVILT 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_ANOGA (60S ribosomal protein L17 OS=Anopheles gambiae GN=RpL17 PE=3 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.767e-35
Identity = 74/112 (66.07%), Postives = 91/112 (81.25%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            L +A+R+L++V+  K+ +PF RF GGVGR AQAK+      GRWP KSA+F+L LLKNAE+NA+ KGLDVD L I+HIQVN+A   RRRTYRAHGRINPYMSSPCHIEL+L+
Sbjct:   41 LRRAQRFLKNVIEKKECVPFRRFNGGVGRCAQAKH-WGTSVGRWPKKSAEFLLQLLKNAEANADYKGLDVDRLVINHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIELSLT 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_BOMMO (60S ribosomal protein L17 OS=Bombyx mori GN=RpL17 PE=2 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.308e-35
Identity = 80/132 (60.61%), Postives = 93/132 (70.45%), Query Frame = -3
Query:  325 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSK 720
            L +A RYL++V+  K+ IPF RF GGVGR AQAK +    QGRWP KSA+F+L LL+NAESNA+ K LDVD L I HIQVN+A   RRRTYRAHGRINPYMSSPCHIE+ LS           T  A +K K
Sbjct:   41 LRRAVRYLKNVIEKKECIPFRRFNGGVGRCAQAK-QFGTTQGRWPKKSAEFLLQLLRNAESNADNKTLDVDRLVIDHIQVNRAPCLRRRTYRAHGRINPYMSSPCHIEVCLSEREDAVARVAPTDDAPAKKK 171          
The following BLAST results are available for this feature:
BLAST of CN186103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RL17_MOUSE2.466e-3768.7560S ribosomal protein L17 OS=Mus musculus GN=Rpl17... [more]
RL17_BOVIN2.466e-3768.7560S ribosomal protein L17 OS=Bos taurus GN=RPL17 P... [more]
RL17_PECGU4.206e-3768.4760S ribosomal protein L17 OS=Pectinaria gouldii GN... [more]
RL17_IXOSC1.224e-3668.7560S ribosomal protein L17 OS=Ixodes scapularis GN=... [more]
RL17_ARGMO2.087e-3667.8660S ribosomal protein L17 OS=Argas monolakensis GN... [more]
RL17_CAEEL3.561e-3666.9660S ribosomal protein L17 OS=Caenorhabditis elegan... [more]
RL17_LONON7.932e-3661.3660S ribosomal protein L17 OS=Lonomia obliqua GN=Rp... [more]
RL17_PHLPP1.767e-3566.0760S ribosomal protein L17 OS=Phlebotomus papatasi ... [more]
RL17_ANOGA1.767e-3566.0760S ribosomal protein L17 OS=Anopheles gambiae GN=... [more]
RL17_BOMMO2.308e-3560.6160S ribosomal protein L17 OS=Bombyx mori GN=RpL17 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186103 ID=CN186103; Name=CN186103; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTTTTTTTTTCAAGATATTCAGATTCGATTAGCTGCCTTTGGA
ATTTGGTTTGGAATGACAACTCATACACCCATATCTTTAAGCTTCAAAAT
AAGCTTGAAAAGTCTTTAATTTTCATAAAGCTCCAACAGTATGACTGAGG
ATTCTAACAAAACAGTAAACTGGACGTAATATGAAATAAACAAAATATGA
TGTCTGATTTGACTAAATAACATCTCAGTCACTATTAAAGGTAAAAAAAC
TCACTTCATCAAGAACACAAAATAGAAAATCAGGGCACTCTCCAATTGCT
ATGCTAAACCTCAGACAATTACTTCTTTGATTTGCTAGTTGCCAACTGGG
TCTCAGGCTCTTTCTTTACTGGCTCTTCCTTTTCAGATAAGGTCAACTCA
ATATGGCAGGGAGAGGACATGTAAGGATTAATTCTTCCATGAGCACGGTA
TGTGCGGCGCCTTTGCTTTTGTGCCTGGTTGACTTGGATGTGAGAAATGT
AGAGTGCATCAACATCTAAACCTTTCACCTCAGCATTACTCTCAGCATTC
TTGAGCAAGTCAAGAATGAACTTTGCTGATTTGACAGGCCATCGTCCCTG
TCCATTTGGATGCCTATTCTTTGCCTGAGCAGTACGTCCAACACCACCGC
AGAATCGTGTGAAGGGAATGGCCTGTTTATGGGCCATAACATCCTCCAAA
TACCTCTTAGCCTTCGTCAAAG
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