CN186103

Overview
NameCN186103
Unique NameCN186103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17A_SCHPO (60S ribosomal protein L17-A OS=Schizosaccharomyces pombe GN=rpl17a PE=2 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 5.685e-34
Identity = 72/112 (64.29%), Postives = 84/112 (75.00%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            L KA  +L++V  HKQA+PF RF GGVGRTAQ K      Q RWPVKS KF  DLLKNAE+NAE KGLD+D L I H+QVN A KQRRRTYRAHGR+  Y+SSP HIE+ ++
Sbjct:   41 LKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVT-QARWPVKSVKFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_DICDI (60S ribosomal protein L17 OS=Dictyostelium discoideum GN=rpl17 PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 9.697e-34
Identity = 71/112 (63.39%), Postives = 87/112 (77.68%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            LT+AK YL +V+AH++ IPF RF GGVGRT QAK      QGRWP KS + IL LL+NAE+NAE KGL+V+ L I+H+QV +AQ+QRRRTYRAHGRINPYM SP  +E  L+
Sbjct:   43 LTRAKAYLNNVLAHRECIPFRRFKGGVGRTGQAKI-FGTSQGRWPKKSVEHILSLLQNAEANAEAKGLNVEKLKIAHVQVQRAQQQRRRTYRAHGRINPYMCSPSTVEFILT 153          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_YARLI (60S ribosomal protein L17 OS=Yarrowia lipolytica GN=RPL17 PE=3 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.266e-33
Identity = 77/133 (57.89%), Postives = 89/133 (66.92%), Query Frame = -3
Query:  322 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLSXXXXXXXXXXETQLATSKSKK 720
            L KA  YL+ V  HK+AIPF +  G +GRT Q K      + RWPVKS KF+ DLL+NA++NAE KGLD + L ISHIQVNQA KQRRRTYRAHGRIN Y SSP HIEL LS          ET LA   S++
Sbjct:   41 LQKALAYLDQVTDHKRAIPFRKHAGSIGRTGQGKEFGVT-KARWPVKSIKFVQDLLQNAQANAETKGLDKETLVISHIQVNQAPKQRRRTYRAHGRINAYQSSPSHIELILSEPAEEIAKAKETSLAHISSRQ 172          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17A_YEAST (60S ribosomal protein L17-A OS=Saccharomyces cerevisiae GN=RPL17A PE=1 SV=4)

HSP 1 Score: 142.895 bits (359), Expect = 1.654e-33
Identity = 71/112 (63.39%), Postives = 84/112 (75.00%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            LTKA++YLE V+ H++AIPF RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQVNQA KQRRRTYRAHGRIN Y SSP HIEL ++
Sbjct:   41 LTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17B_SCHPO (60S ribosomal protein L17-B OS=Schizosaccharomyces pombe GN=rpl17b PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.160e-33
Identity = 71/112 (63.39%), Postives = 83/112 (74.11%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            L KA  +L++V  HKQA+PF RF GGVGRTAQ K      Q RWPVKS  F  DLLKNAE+NAE KGLD+D L I H+QVN A KQRRRTYRAHGR+  Y+SSP HIE+ ++
Sbjct:   41 LKKAFIFLDNVKEHKQAVPFRRFNGGVGRTAQGKEFGVT-QARWPVKSVNFFYDLLKNAEANAEAKGLDMDKLIIKHVQVNAAPKQRRRTYRAHGRVTAYLSSPSHIEIIVA 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_DIACI (60S ribosomal protein L17 OS=Diaphorina citri GN=RpL17 PE=2 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 2.821e-33
Identity = 71/112 (63.39%), Postives = 86/112 (76.79%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            L +A ++L++V    + +PF R+ GGVGR AQAK +    QGRWP KSA F+L LLKNAESNA+ +GLD D L I HIQVN+A + RRRTYRAHGRINPYMSSPCHIE+ LS
Sbjct:   41 LRRAIKFLKNVKDQLECVPFRRYNGGVGRCAQAK-QWGTTQGRWPRKSADFLLQLLKNAESNADYRGLDTDRLVIEHIQVNRAPRLRRRTYRAHGRINPYMSSPCHIEVILS 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17B_YEAST (60S ribosomal protein L17-B OS=Saccharomyces cerevisiae GN=RPL17B PE=1 SV=2)

HSP 1 Score: 141.739 bits (356), Expect = 3.685e-33
Identity = 70/112 (62.50%), Postives = 84/112 (75.00%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            LTKA++YL+ V+ H++AIPF RF   +GRTAQ K      + RWP KS KF+  LL+NA +NAE KGLD   LY+SHIQVNQA KQRRRTYRAHGRIN Y SSP HIEL ++
Sbjct:   41 LTKAQKYLDQVLDHQRAIPFRRFNSSIGRTAQGKEFGVT-KARWPAKSVKFVQGLLQNAAANAEAKGLDATKLYVSHIQVNQAPKQRRRTYRAHGRINKYESSPSHIELVVT 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_ASPFU (60S ribosomal protein L17 OS=Aspergillus fumigatus GN=rpl17 PE=3 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 6.285e-33
Identity = 68/112 (60.71%), Postives = 85/112 (75.89%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            L +A  +LE+V    + +PF R+ G +GRTAQ K    + + RWPVKSA+F+LDLLKNAE+NA+ KGLD   L + HIQVNQA K RRRTYRAHGRINPYM++PCHIEL L+
Sbjct:   48 LQRALAFLENVKNKTEVVPFRRYAGSIGRTAQGKQWGVS-KARWPVKSAQFLLDLLKNAEANADTKGLDTGNLIVKHIQVNQAPKGRRRTYRAHGRINPYMTNPCHIELILT 158          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_DEBHA (60S ribosomal protein L17 OS=Debaryomyces hansenii GN=RPL17 PE=3 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 1.829e-32
Identity = 68/112 (60.71%), Postives = 82/112 (73.21%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            L +A++YL+ V+ H++AIPF RF   +GRT Q K      + RWP KS  FI DLL+N ++NAE KGLD   L +SHIQVNQA KQRRRTYRAHGRIN Y SSPCHIEL L+
Sbjct:   41 LERAQKYLDQVLDHQRAIPFRRFNSSIGRTGQGKEFGVT-KARWPAKSVNFIKDLLRNGQANAESKGLDASKLKVSHIQVNQAPKQRRRTYRAHGRINAYQSSPCHIELILT 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL17_THEPA (60S ribosomal protein L17 OS=Theileria parva GN=RPL17 PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 5.321e-32
Identity = 67/106 (63.21%), Postives = 81/106 (76.42%), Query Frame = -3
Query:  394 AKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 711
            AKRYL DV+  K+ +PF +F GGVGR AQAK    + QGRWP KS KF+LDLLKN ESNAEVKGL+   L + H+QVN+A   RRR+YRAHGRI P++S PCH+EL
Sbjct:   44 AKRYLNDVIERKRCVPFRKFRGGVGRCAQAK-AFKHTQGRWPEKSCKFLLDLLKNLESNAEVKGLEQSKLRLEHVQVNRAPVGRRRSYRAHGRIIPFLSHPCHVEL 148          
The following BLAST results are available for this feature:
BLAST of CN186103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RL17A_SCHPO5.685e-3464.2960S ribosomal protein L17-A OS=Schizosaccharomyces... [more]
RL17_DICDI9.697e-3463.3960S ribosomal protein L17 OS=Dictyostelium discoid... [more]
RL17_YARLI1.266e-3357.8960S ribosomal protein L17 OS=Yarrowia lipolytica G... [more]
RL17A_YEAST1.654e-3363.3960S ribosomal protein L17-A OS=Saccharomyces cerev... [more]
RL17B_SCHPO2.160e-3363.3960S ribosomal protein L17-B OS=Schizosaccharomyces... [more]
RL17_DIACI2.821e-3363.3960S ribosomal protein L17 OS=Diaphorina citri GN=R... [more]
RL17B_YEAST3.685e-3362.5060S ribosomal protein L17-B OS=Saccharomyces cerev... [more]
RL17_ASPFU6.285e-3360.7160S ribosomal protein L17 OS=Aspergillus fumigatus... [more]
RL17_DEBHA1.829e-3260.7160S ribosomal protein L17 OS=Debaryomyces hansenii... [more]
RL17_THEPA5.321e-3263.2160S ribosomal protein L17 OS=Theileria parva GN=RP... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186103 ID=CN186103; Name=CN186103; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTTTTTTTTTCAAGATATTCAGATTCGATTAGCTGCCTTTGGA
ATTTGGTTTGGAATGACAACTCATACACCCATATCTTTAAGCTTCAAAAT
AAGCTTGAAAAGTCTTTAATTTTCATAAAGCTCCAACAGTATGACTGAGG
ATTCTAACAAAACAGTAAACTGGACGTAATATGAAATAAACAAAATATGA
TGTCTGATTTGACTAAATAACATCTCAGTCACTATTAAAGGTAAAAAAAC
TCACTTCATCAAGAACACAAAATAGAAAATCAGGGCACTCTCCAATTGCT
ATGCTAAACCTCAGACAATTACTTCTTTGATTTGCTAGTTGCCAACTGGG
TCTCAGGCTCTTTCTTTACTGGCTCTTCCTTTTCAGATAAGGTCAACTCA
ATATGGCAGGGAGAGGACATGTAAGGATTAATTCTTCCATGAGCACGGTA
TGTGCGGCGCCTTTGCTTTTGTGCCTGGTTGACTTGGATGTGAGAAATGT
AGAGTGCATCAACATCTAAACCTTTCACCTCAGCATTACTCTCAGCATTC
TTGAGCAAGTCAAGAATGAACTTTGCTGATTTGACAGGCCATCGTCCCTG
TCCATTTGGATGCCTATTCTTTGCCTGAGCAGTACGTCCAACACCACCGC
AGAATCGTGTGAAGGGAATGGCCTGTTTATGGGCCATAACATCCTCCAAA
TACCTCTTAGCCTTCGTCAAAG
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