CN186103

Overview
NameCN186103
Unique NameCN186103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1077 contig Csv1_Contig1077:237..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_SULAC (50S ribosomal protein L22P OS=Sulfolobus acidocaldarius GN=rpl22p PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.456e-13
Identity = 41/111 (36.94%), Postives = 61/111 (54.95%), Query Frame = -3
Query:  388 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 720
            L +A+ +L +V+  K+A+PF R+  G    +    +     GR+P K+ K++L LL NAE+NA  KGLD+D L I HI  ++    +R   RA GR         HIE+ L
Sbjct:   43 LKEAREFLNNVLEEKEALPFWRYSHGTSHRSNISRKWKVKSGRYPKKAIKYVLKLLDNAENNANSKGLDIDNLKIVHIAAHKGLVLKRYMTRAFGRSTRKYKYLSHIEVIL 153          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_METJA (50S ribosomal protein L22P OS=Methanocaldococcus jannaschii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.483e-13
Identity = 44/111 (39.64%), Postives = 65/111 (58.56%), Query Frame = -3
Query:  388 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 720
            L +A ++LEDV+A ++ + F R C  VG     K +     GR+PVK+AK IL +L++A++NAE KGL+ + L I HI  N+    +R   RA GR  P      HI++ L
Sbjct:   45 LDEAIKFLEDVIAMRRPVLFRRHCKKVGHR---KGKLGWPAGRYPVKAAKAILKILQHAKANAEYKGLNTEKLRIKHISTNKGITIKRYMPRAFGRATPKFQETVHIQVIL 152          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_METTH (50S ribosomal protein L22P OS=Methanobacterium thermoautotrophicum GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.243e-13
Identity = 46/113 (40.71%), Postives = 66/113 (58.41%), Query Frame = -3
Query:  388 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNG--QGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 720
            L KAK+YLE+V+  ++ + F R+   VG       R  NG   GR+PVK+A  IL +L+NAE+NAE KGLD + L I HI  ++    R    RA GR  P+ +   H+++ L
Sbjct:   43 LEKAKKYLEEVIRMERPVAFKRYNRKVGH-----RRGLNGWASGRYPVKAAGQILKVLENAEANAEYKGLDTEKLRIIHISSHRGPVIRGWIPRAFGRATPFNTPTTHVQIVL 150          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_METST (50S ribosomal protein L22P OS=Methanosphaera stadtmanae (strain DSM 3091) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 46/111 (41.44%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  388 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 720
            L  AK +LEDV+A K  +PF R    VG  +  K       GR+PVK+A  IL +L+NAE+NAE + LDV+ L + H+  N+    R  T RA GR +P  +   HI++ L
Sbjct:   44 LEDAKAFLEDVIAKKTVVPFKRHNKKVGHRSDLKGWP---SGRYPVKAAAAILKVLENAEANAENEELDVENLKLVHVCANRGVIIRGWTPRAFGRASPSNTPTTHIQIVL 151          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_HYPBU (50S ribosomal protein L22P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.236e-13
Identity = 46/112 (41.07%), Postives = 65/112 (58.04%), Query Frame = -3
Query:  385 KAKRYLEDVMAHKQAIPFTRFCGGVG--RTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 714
            +A+R+LE V   ++ IP  R+ G     R   AK + P G  R+PVK+AK +L LL N  +NAEVKGLD + L I HI V++ +  +R   RA GR  P      HIE+ ++
Sbjct:   44 EARRFLERVARGEEPIPVRRYSGKQAHHRGLAAKYKWPIG--RYPVKAAKILLRLLDNVTNNAEVKGLDTERLRIVHIAVHKGRVLKRWMPRAFGRATPKFKKYSHIEIVVA 153          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_THEPD (50S ribosomal protein L22P OS=Thermofilum pendens (strain Hrk 5) GN=rpl22p PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.232e-12
Identity = 41/109 (37.61%), Postives = 60/109 (55.05%), Query Frame = -3
Query:  394 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 720
            + +A+R L ++   K+++P  R+   VG  +        G GR+PVK AK +L LL N E+NAE KGL+V+ L I H   ++  K R    RA GR  PY     H+E+
Sbjct:   42 IEEARRILTEIAEMKRSVPLKRYNKKVGHRSDVP-----GPGRYPVKVAKNLLKLLDNLENNAEFKGLNVENLRIVHAAAHKGMKIRNYLPRAFGRATPYYDQLVHVEI 145          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_METKA (50S ribosomal protein L22P OS=Methanopyrus kandleri GN=rpl22p PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.609e-12
Identity = 44/111 (39.64%), Postives = 64/111 (57.66%), Query Frame = -3
Query:  388 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 720
            L +AK +L  V+  ++A+PF +    V    Q   R     GR+P K+A+ IL +L++AE+NAE KGLD D LYI HI  ++ +  R    RA GR  P+ +   HIE+ L
Sbjct:   48 LDRAKEFLRRVIRKEEAVPFRKHKKKVPHRRQI--RPGWDAGRFPEKAAREILRVLEHAEANAEYKGLDTDRLYIKHIAAHKGRVIRGWIPRAFGRATPFNTPTTHIEVIL 156          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_HALWD (50S ribosomal protein L22P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.745e-12
Identity = 36/111 (32.43%), Postives = 66/111 (59.46%), Query Frame = -3
Query:  388 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 720
            +  A+ YL+DV+A +Q++PF +   GVG  +          GR+P K++K  L+L++N  SNA  +G D +A+ I H+  ++  +++ R  RA G  +P+ ++ C +EL +
Sbjct:   41 IADAESYLDDVIAQRQSVPFRQHNSGVGHRSDIDGWDA---GRYPEKASKAFLELIENVASNANEQGFDGNAMAIRHVAAHKVGERQGRKPRAFGSADPWNTTICDVELII 148          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_PYRHO (50S ribosomal protein L22P OS=Pyrococcus horikoshii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 45/111 (40.54%), Postives = 60/111 (54.05%), Query Frame = -3
Query:  388 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 720
            L  A RYL++V+A K+ +P  R+    G     K     G GR+PVK AK I  +L NA++NAE KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:   44 LNDALRYLDEVIALKRPVPLRRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAKNNAEQKGLDPDKLKIIHIAAHRGPVLRGWYPRAFGRATPFNEQTTHIEVVV 150          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_ARCFU (50S ribosomal protein L22P OS=Archaeoglobus fulgidus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 3.586e-12
Identity = 42/109 (38.53%), Postives = 61/109 (55.96%), Query Frame = -3
Query:  394 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 720
            + +A++ LEDV+  K+AIPF R      + A  +       GR+P K+AK++L +L+N E+NAE KGLDV+ L I H Q  + +   R   RA GR  P       +EL
Sbjct:   45 IEEARKLLEDVVEMKRAIPFKRH---KKKVAHRRGLEKWYAGRYPQKAAKYVLKVLRNLEANAEYKGLDVENLVIVHAQAQKGRVIERYMPRAFGRATPRFQQLTTVEL 150          
The following BLAST results are available for this feature:
BLAST of CN186103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RL22_SULAC1.456e-1336.9450S ribosomal protein L22P OS=Sulfolobus acidocald... [more]
RL22_METJA2.483e-1339.6450S ribosomal protein L22P OS=Methanocaldococcus j... [more]
RL22_METTH3.243e-1340.7150S ribosomal protein L22P OS=Methanobacterium the... [more]
RL22_METST4.236e-1341.4450S ribosomal protein L22P OS=Methanosphaera stadt... [more]
RL22_HYPBU4.236e-1341.0750S ribosomal protein L22P OS=Hyperthermus butylic... [more]
RL22_THEPD1.232e-1237.6150S ribosomal protein L22P OS=Thermofilum pendens ... [more]
RL22_METKA1.609e-1239.6450S ribosomal protein L22P OS=Methanopyrus kandler... [more]
RL22_HALWD2.745e-1232.4350S ribosomal protein L22P OS=Haloquadratum walsby... [more]
RL22_PYRHO3.586e-1240.5450S ribosomal protein L22P OS=Pyrococcus horikoshi... [more]
RL22_ARCFU3.586e-1238.5350S ribosomal protein L22P OS=Archaeoglobus fulgid... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186103 ID=CN186103; Name=CN186103; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTTTTTTTTTCAAGATATTCAGATTCGATTAGCTGCCTTTGGA
ATTTGGTTTGGAATGACAACTCATACACCCATATCTTTAAGCTTCAAAAT
AAGCTTGAAAAGTCTTTAATTTTCATAAAGCTCCAACAGTATGACTGAGG
ATTCTAACAAAACAGTAAACTGGACGTAATATGAAATAAACAAAATATGA
TGTCTGATTTGACTAAATAACATCTCAGTCACTATTAAAGGTAAAAAAAC
TCACTTCATCAAGAACACAAAATAGAAAATCAGGGCACTCTCCAATTGCT
ATGCTAAACCTCAGACAATTACTTCTTTGATTTGCTAGTTGCCAACTGGG
TCTCAGGCTCTTTCTTTACTGGCTCTTCCTTTTCAGATAAGGTCAACTCA
ATATGGCAGGGAGAGGACATGTAAGGATTAATTCTTCCATGAGCACGGTA
TGTGCGGCGCCTTTGCTTTTGTGCCTGGTTGACTTGGATGTGAGAAATGT
AGAGTGCATCAACATCTAAACCTTTCACCTCAGCATTACTCTCAGCATTC
TTGAGCAAGTCAAGAATGAACTTTGCTGATTTGACAGGCCATCGTCCCTG
TCCATTTGGATGCCTATTCTTTGCCTGAGCAGTACGTCCAACACCACCGC
AGAATCGTGTGAAGGGAATGGCCTGTTTATGGGCCATAACATCCTCCAAA
TACCTCTTAGCCTTCGTCAAAG
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