CN186103

Overview
NameCN186103
Unique NameCN186103
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length722
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_METMJ (50S ribosomal protein L22P OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=rpl22p PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.988e-12
Identity = 45/111 (40.54%), Postives = 63/111 (56.76%), Query Frame = -3
Query:  385 TKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 717
            T+AK YL DV+A K+AIPF RF   V    +  ++ P   GR+PVK+A+  + LL++ E NAE  GLDV+ L I H   N  +  R    RA GR  P      +IE+ ++
Sbjct:   43 TEAKAYLTDVVALKKAIPFKRFNRNVAHK-RGLSKWP--AGRYPVKAAEAYIRLLESVEKNAEYIGLDVENLRIDHAAANTGRGLRAFFPRAMGRATPKRRETVNIEIVVT 150          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_PYRAB (50S ribosomal protein L22P OS=Pyrococcus abyssi GN=rpl22p PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.043e-11
Identity = 44/111 (39.64%), Postives = 60/111 (54.05%), Query Frame = -3
Query:  388 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 720
            L  A RYL+DV+A ++ +P  R+    G     K     G GR+PVK AK I  +L NA++NA+ KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:   44 LNDALRYLDDVIALRRPVPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNAQNNAKQKGLDPDKLRIIHIAAHRGPVLRGWYPRAFGRPTPFNEQTTHIEVVV 150          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_SULTO (50S ribosomal protein L22P OS=Sulfolobus tokodaii GN=rpl22p PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.780e-11
Identity = 38/111 (34.23%), Postives = 61/111 (54.95%), Query Frame = -3
Query:  388 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 720
            L  AK++L +V+  K+A+PF +   G    +    +     GR+P K+ K++L +L+NAE+NA  KGLD++ + I HI  ++    +R   RA GR         HIE+ L
Sbjct:   43 LNDAKQFLNNVLEEKEALPFWKHSHGASHRSNISPKWKVKSGRYPKKAIKYVLKVLENAENNANSKGLDLENVKIVHIAAHKGIILKRYMPRAFGRSTRKYRYTSHIEVIL 153          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_THEAC (50S ribosomal protein L22P OS=Thermoplasma acidophilum GN=rpl22p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 39/112 (34.82%), Postives = 63/112 (56.25%), Query Frame = -3
Query:  385 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTLS 720
            L++AK  ++ V+    AIP+ R+   V       +R   G GR+PVK+AK    LL+N E+NAE KGL+ D L I HI  N+ +  ++ T +A+GR         ++E+ ++
Sbjct:   42 LSRAKEIIDAVINKTYAIPYFRYLDSVS------HRPGVGPGRYPVKAAKAFKQLLENVENNAEFKGLNTDNLVIKHIAANKGRMIKKYTPKAYGRAGANFKDLINLEIIVT 147          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_PYRFU (50S ribosomal protein L22P OS=Pyrococcus furiosus GN=rpl22p PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.324e-11
Identity = 44/111 (39.64%), Postives = 58/111 (52.25%), Query Frame = -3
Query:  388 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 720
            L  A RYL+DV+A K+ +P  R+    G     K     G GR+PVK AK I  +L N ++NA  KGLD D L I HI  ++    R    RA GR  P+     HIE+ +
Sbjct:   44 LNDALRYLDDVIALKRPVPLKRYNDSQGH----KPGKGFGPGRYPVKVAKAIKKVLLNVKNNAVQKGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRATPFNEQTTHIEVVV 150          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_SULSO (50S ribosomal protein L22P OS=Sulfolobus solfataricus GN=rpl22p PE=3 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.964e-11
Identity = 40/111 (36.04%), Postives = 59/111 (53.15%), Query Frame = -3
Query:  388 LTKAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIELTL 720
            L  AK +L  V+  K+A+PF R+  G    +    +     GR+P K+ + +L +L+NAE+NA  KGLDVD L I HI  ++    +R   RA GR         +IE+ L
Sbjct:   43 LNDAKDFLNRVLEEKEALPFWRYNKGASHKSNISAKWKIKAGRYPKKAIRQVLKVLENAEANATNKGLDVDKLIIRHIAAHKGITLQRYMPRAFGRATAKYRRTSNIEVIL 153          
BLAST of CN186103 vs. ExPASy Swiss-Prot
Match: RL22_AERPE (50S ribosomal protein L22P OS=Aeropyrum pernix GN=rpl22p PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 5.178e-11
Identity = 39/107 (36.45%), Postives = 59/107 (55.14%), Query Frame = -3
Query:  394 KAKRYLEDVMAHKQAIPFTRFCGGVGRTAQAKNRHPNGQGRWPVKSAKFILDLLKNAESNAEVKGLDVDALYISHIQVNQAQKQRRRTYRAHGRINPYMSSPCHIEL 714
            +A+RYL  V+  ++A+PF R  G         ++     GR+PVK+A+++L LL N E+NA  K LDV+ L I H+  ++    +R   RA GR  P      HIE+
Sbjct:   45 EARRYLRAVIEKREAVPFRRAHGKQAHRRGLADKWGWPVGRYPVKAARYMLKLLDNVEANAANKNLDVERLKIIHVAAHKGITLKRWMPRAWGRATPRNRVHSHIEI 151          
The following BLAST results are available for this feature:
BLAST of CN186103 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
RL22_METMJ7.988e-1240.5450S ribosomal protein L22P OS=Methanoculleus maris... [more]
RL22_PYRAB1.043e-1139.6450S ribosomal protein L22P OS=Pyrococcus abyssi GN... [more]
RL22_SULTO1.780e-1134.2350S ribosomal protein L22P OS=Sulfolobus tokodaii ... [more]
RL22_THEAC2.324e-1134.8250S ribosomal protein L22P OS=Thermoplasma acidoph... [more]
RL22_PYRFU2.324e-1139.6450S ribosomal protein L22P OS=Pyrococcus furiosus ... [more]
RL22_SULSO3.964e-1136.0450S ribosomal protein L22P OS=Sulfolobus solfatari... [more]
RL22_AERPE5.178e-1136.4550S ribosomal protein L22P OS=Aeropyrum pernix GN=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F23_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186103 ID=CN186103; Name=CN186103; organism=Citrus sinensis; type=EST; length=722bp
TTTTTTTTTTTTTTTTTCAAGATATTCAGATTCGATTAGCTGCCTTTGGA
ATTTGGTTTGGAATGACAACTCATACACCCATATCTTTAAGCTTCAAAAT
AAGCTTGAAAAGTCTTTAATTTTCATAAAGCTCCAACAGTATGACTGAGG
ATTCTAACAAAACAGTAAACTGGACGTAATATGAAATAAACAAAATATGA
TGTCTGATTTGACTAAATAACATCTCAGTCACTATTAAAGGTAAAAAAAC
TCACTTCATCAAGAACACAAAATAGAAAATCAGGGCACTCTCCAATTGCT
ATGCTAAACCTCAGACAATTACTTCTTTGATTTGCTAGTTGCCAACTGGG
TCTCAGGCTCTTTCTTTACTGGCTCTTCCTTTTCAGATAAGGTCAACTCA
ATATGGCAGGGAGAGGACATGTAAGGATTAATTCTTCCATGAGCACGGTA
TGTGCGGCGCCTTTGCTTTTGTGCCTGGTTGACTTGGATGTGAGAAATGT
AGAGTGCATCAACATCTAAACCTTTCACCTCAGCATTACTCTCAGCATTC
TTGAGCAAGTCAAGAATGAACTTTGCTGATTTGACAGGCCATCGTCCCTG
TCCATTTGGATGCCTATTCTTTGCCTGAGCAGTACGTCCAACACCACCGC
AGAATCGTGTGAAGGGAATGGCCTGTTTATGGGCCATAACATCCTCCAAA
TACCTCTTAGCCTTCGTCAAAG
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