DC900167

Overview
NameDC900167
Unique NameDC900167
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig187 contig Csv1_Contig187:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_METAC (50S ribosomal protein L6P OS=Methanosarcina acetivorans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.171e-21
Identity = 64/185 (34.59%), Postives = 101/185 (54.59%), Query Frame = 1
Query:   85 SETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVK---DELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEKS 630
            + T++IP+GV V +   V    GP+G + R   +  +    M D + G+  + +DA +  ++  A + T  SH+ NL+ GV +G+  KM  VYAHFP+   +  + K + I NFLGEKK R         +I   KVK   +++ + G + E V ++AA I QK  +K  D R F DGIY+ +K+
Sbjct:    6 ARTIEIPEGVSVSLAQDVFTATGPKGTVERKLWYPGI----MIDVKDGE--VVVDAEYARKEQKAMVGTFASHIRNLVKGVNEGFECKMSIVYAHFPMQVKV--DGKTLIIGNFLGEKKPR------FAKIIGETKVKVSGNDVTITGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQKA 176          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_HALWD (50S ribosomal protein L6P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 9.171e-21
Identity = 66/187 (35.29%), Postives = 102/187 (54.55%), Query Frame = 1
Query:   79 LSSETMDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSD---KVKDELV-LDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 627
            ++   ++IP+ V  +++   + VEGP G ++R   + ++   +  DE+     + I+      KTSA + T  SHV N+I GVT G+ Y+M   YAHFP+  S+  +   IE  NFLGEK  R+       T IR D   ++  E+V L G   E V ++AA I Q   V +KD R F DG+Y+++K
Sbjct:    1 MTRTAIEIPENVSAEVSNLALTVEGPNGSVTRTLWYPSVT--VSVDEDADADAVVIETDETDAKTSATVGTFESHVSNMIHGVTDGWSYEMEVYYAHFPMQVSVEGDEVIIE--NFLGEKASRR-------TPIRGDTNVQIDGEMVTLTGPSKEDVGQTAADIEQLTRVTDKDTRIFQDGVYITQK 176          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_HALSA (50S ribosomal protein L6P OS=Halobacterium salinarium GN=rpl6p PE=1 SV=3)

HSP 1 Score: 100.138 bits (248), Expect = 1.564e-20
Identity = 58/178 (32.58%), Postives = 96/178 (53.93%), Query Frame = 1
Query:   94 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 627
            ++IPD V  +++   + VEGP G ++R   + ++D  +  D       + + +     KT + + T  SHV N+  GV++G+ YK+   Y+HFP+   +    + + I+NFLGEK  R+  +     V+  D   +E+ L G  IE V ++AA I Q   V +KD R F DG+Y+ EK
Sbjct:    6 IEIPDDVTAEVDHLDLTVEGPEGSVTRRLWYPDVDVSVEDDA------VVVASEVDDAKTDSTVGTFESHVANMFHGVSEGWEYKLEVHYSHFPMQVDV--EGEEVVIQNFLGEKAARRTQIRGDTDVVVDD---EEVTLSGPSIEDVGQTAADIEQLTRVTDKDTRVFQDGVYIVEK 172          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_NATPD (50S ribosomal protein L6P OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.014e-19
Identity = 64/177 (36.16%), Postives = 96/177 (54.24%), Query Frame = 1
Query:   94 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSE 624
            ++IPD V   ++   + VEGP G ++R   + ++      D E G   ++ D    + KT + + T  SHV N+  GVT+G+ Y M   Y+HFP+  S+   +  I I NFLGEK  RK   + G T +  D   +EL + G  IE V ++AA I Q   V +KD R F DG+Y++E
Sbjct:    5 IEIPDEVTATMDHLEVTVEGPNGSVTRRLWYPDIT----VDVEDGAVVIETDD--DNAKTRSTVGTFESHVTNMFHGVTEGWEYSMEVFYSHFPMQVSVEGGD--IVIENFLGEKAPRKTP-VRGDTSVEVD--GEELTVSGPSIEDVGQTAADIEQLTRVSDKDTRVFQDGVYITE 170          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_HALMA (50S ribosomal protein L6P OS=Haloarcula marismortui GN=rpl6p PE=1 SV=3)

HSP 1 Score: 96.6709 bits (239), Expect = 1.730e-19
Identity = 61/178 (34.27%), Postives = 100/178 (56.18%), Query Frame = 1
Query:   94 MDIPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 627
            ++IP+ V  + +   I VEG  G ++R   + ++D  +  D +T    + I++   + KT + I T  SH+ N+  GVT+G+ Y M   Y+HFP+  ++  +   IE  NFLGEK  R+   + G T +  D   +EL + G DIE V ++AA I Q   + +KD+R F DG+Y++ K
Sbjct:    6 LEIPEDVDAEQDHLDITVEGDNGSVTRRLWYPDID--VSVDGDT----VVIESDEDNAKTMSTIGTFQSHIENMFHGVTEGWEYGMEVFYSHFPMQVNVEGDEVVIE--NFLGEKAPRRT-TIHGDTDVEID--GEELTVSGPDIEAVGQTAADIEQLTRINDKDVRVFQDGVYITRK 172          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_NANEQ (50S ribosomal protein L6P OS=Nanoarchaeum equitans GN=rpl6p PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.259e-19
Identity = 57/182 (31.32%), Postives = 97/182 (53.30%), Query Frame = 1
Query:  100 IPDGVKVKINAKVIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKK--VRKVDMLDGVTV-IRSDKVKDELVLDGNDIELVSRSAALINQKCHV--KNKDIRKFLDGIYVSEKS 630
            IP+ VKV     +++V GP+G++ R F      +H +        K+ ++ +F +R+    I T  SH+ N++ GV   + Y+++  Y HFP+   +  N   +E  NFLGEK   ++++  LD V V I  +K + E+V++  D E     A++I Q      K KD R+F DGI++  K+
Sbjct:   12 IPENVKVSYENNILKVSGPKGEVERKF------YHPLIKLSVNDNKIILETYFATRREKRLINTWRSHIKNMLEGVQNPFVYRLKVCYTHFPMRVKLEGNKLIVE--NFLGEKAPIIKELPYLDKVKVKIEQNKDETEIVVESPDKEKAGIVASMIEQSTRFLHKRKDRRRFTDGIWLYYKA 185          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_ARCFU (50S ribosomal protein L6P OS=Archaeoglobus fulgidus GN=rpl6p PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.121e-18
Identity = 58/189 (30.69%), Postives = 97/189 (51.32%), Query Frame = 1
Query:   76 ILSSETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 627
            +     +++P+ V++ I         ++  GP+G+ +R  K+  +        E G  K+++      +K  A + T   H+ NLITGV +G+ Y ++ VYAHFPI   +  N   IE  NF+GEK  R+  ++    V  S +   ++ + G DIE   ++AA + Q   +K KD R F DGIY+ +K
Sbjct:   18 VYEERVVEVPEDVQLTIEGDSFRGYTLKAVGPKGENTRYLKYRGVFI------EVGDGKVRVYTTSPKKKHKAMVGTFAGHIENLITGVKEGFEYHLKVVYAHFPIKVRVEGNEVIIE--NFIGEKHPRRAKIVGRAQVEISGQ---DIYVRGIDIEECGQTAANLEQATKIKRKDPRVFQDGIYIVKK 195          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_METKA (50S ribosomal protein L6P OS=Methanopyrus kandleri GN=rpl6p PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.262e-18
Identity = 55/191 (28.80%), Postives = 106/191 (55.50%), Query Frame = 1
Query:   76 ILSSETMDIPDGVKVKINAKV-----IEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLD--GVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 627
            I+  E + I D V+++I+ +      + V+GP+G+++++F + ++   +  DE      + I A   +R+  A +    +++ N+  GVT+G+ YK++ VY+HFP    +      + I NF+GE   R  +++D     VI   +   ++++ G D E V ++AA + Q  ++K++D R F DGIY+ EK
Sbjct:   17 IVMEERVKIKDDVEIEISQREDRRYEVTVKGPKGEVTKEFYYPDVYLWVEDDE------VVIAATRSNRRQKAILGMIKAYIENMQKGVTEGHEYKLKLVYSHFPPEVKVDQKEGKVYIENFMGENVPRVAEIVDPENTEVIVQGQ---DIIVRGIDKEAVGQTAANLEQATYIKDRDPRVFQDGIYIVEK 198          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_METBF (50S ribosomal protein L6P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rpl6p PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.491e-18
Identity = 59/179 (32.96%), Postives = 96/179 (53.63%), Query Frame = 1
Query:   94 MDIPDGVKVKINAK-VIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALINQKCHVKNKDIRKFLDGIYVSEK 627
            ++IP+G+ V  +   V    GP G + R   +  +  ++   E      +++DA    ++  A + T  SH+ NL+ GV +G+  KM  +YAHFP+   +  + K + I NFLGEKK R   +L G T ++     +E+ + G + E V ++AA I QK  +K  D R F DGIY+ +K
Sbjct:    9 IEIPEGISVSFSQDDVFTATGPLGTVERKLWYPGIKIYVRDGE------VEVDAESSRKEQKAMVGTFTSHIKNLMKGVNEGFECKMTILYAHFPMQVKV--DGKTLIIGNFLGEKKPRIAKIL-GETKVKVS--GNEVTVSGINKEDVGQTAANIEQKTKIKRFDPRIFQDGIYIVQK 176          
BLAST of DC900167 vs. ExPASy Swiss-Prot
Match: RL6_PYRAE (50S ribosomal protein L6P OS=Pyrobaculum aerophilum GN=rpl6p PE=3 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 3.053e-16
Identity = 53/169 (31.36%), Postives = 93/169 (55.03%), Query Frame = 1
Query:   67 MKTILSSETMDIPDGVKVKINAK-----VIEVEGPRGKLSRDFKHLNLDFHLMTDEETGKRKLKIDAWFGSRKTSAAIRTALSHVGNLITGVTKGYRYKMRFVYAHFPINASIGNNNKAIEIRNFLGEKKVRKVDMLDGVTVIRSDKVKDELVLDGNDIELVSRSAALI 558
            M+ + S E ++IP GV V I        +++V+GP G+++++FK+  +   L         K+ ++ +   ++  A + T    + N+  GVT+G+RYK++ +Y HFP+   +  N   IE  NFLG K    +++  GV V    K K+++V++G D ELVS  AA +
Sbjct:    1 MRVVYSVEEVEIPKGVSVSIERTGPFDYIVKVKGPLGEVTKEFKNTPVVMSLQDG------KIVMEVFKARKREYAILGTYKGILKNMFLGVTRGWRYKLKVIYTHFPMLVKVQGNQLVIE--NFLGRKSKITLNIPKGVKV--EVKGKEDIVIEGIDRELVSTFAAAV 159          
The following BLAST results are available for this feature:
BLAST of DC900167 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
RL6_METAC9.171e-2134.5950S ribosomal protein L6P OS=Methanosarcina acetiv... [more]
RL6_HALWD9.171e-2135.2950S ribosomal protein L6P OS=Haloquadratum walsbyi... [more]
RL6_HALSA1.564e-2032.5850S ribosomal protein L6P OS=Halobacterium salinar... [more]
RL6_NATPD1.014e-1936.1650S ribosomal protein L6P OS=Natronomonas pharaoni... [more]
RL6_HALMA1.730e-1934.2750S ribosomal protein L6P OS=Haloarcula marismortu... [more]
RL6_NANEQ2.259e-1931.3250S ribosomal protein L6P OS=Nanoarchaeum equitans... [more]
RL6_ARCFU1.121e-1830.6950S ribosomal protein L6P OS=Archaeoglobus fulgidu... [more]
RL6_METKA3.262e-1828.8050S ribosomal protein L6P OS=Methanopyrus kandleri... [more]
RL6_METBF9.491e-1832.9650S ribosomal protein L6P OS=Methanosarcina barker... [more]
RL6_PYRAE3.053e-1631.3650S ribosomal protein L6P OS=Pyrobaculum aerophilu... [more]

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Properties
Property NameValue
Genbank descriptionDC900167 VSS Citrus sinensis cDNA clone VS27V88 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900167 ID=DC900167; Name=DC900167; organism=Citrus sinensis; type=EST; length=830bp
CTCGTGCCGAATTCGGCACGAGGCGTAGGAGGAGAAGAAGAAGGAAGATA
TTACAGAGAGAGGAAAATGAAGACAATTCTCTCTTCAGAGACTATGGACA
TCCCAGATGGGGTGAAAGTCAAGATAAATGCAAAGGTTATTGAAGTAGAG
GGACCGAGAGGTAAGCTCAGCCGCGACTTCAAGCATTTGAACCTCGACTT
CCATCTCATGACTGACGAGGAAACCGGTAAGCGCAAGCTTAAGATCGATG
CCTGGTTCGGCTCTCGCAAGACCAGCGCCGCCATCAGAACTGCCCTCAGC
CATGTCGGCAATCTCATCACTGGTGTTACCAAGGGCTATCGCTACAAGAT
GAGATTTGTGTACGCTCACTTTCCCATCAACGCCTCCATCGGTAACAATA
ACAAGGCCATTGAGATCCGTAACTTTCTTGGAGAGAAAAAGGTTCGAAAA
GTGGATATGCTTGATGGTGTTACCGTCATTAGGTCCGATAAGGTTAAGGA
TGAACTCGTTCTTGATGGAAATGACATTGAACTCGTGTCTCGCTCTGCTG
CTCTAATCAATCAGAAATGCCATGTGAAGAACAAGGACATTAGGAAATTT
CTTGATGGGATCTATGTCAGTGAGAAAAGCACCATACTTGGAGAAGAATG
ATGATTAGCTTTCGAATTTTCTTGTCATAGTAATGTTATGAATTTTTTTT
TAAATCTTTTTAATTTTGCCTCTTACTTTGAGTTGAGGACATGCTTTTGG
TTGTATTTGGGATTTGGGACTTGGGAGTTCTAGATTTCAATTTTATGTCT
TCAATTGCTATCATCACAATATATGTATGG
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