CN186095

Overview
NameCN186095
Unique NameCN186095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA6_SCHPO (Probable proteasome subunit alpha type-6 OS=Schizosaccharomyces pombe GN=SPBC646.16 PE=2 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.147e-41
Identity = 89/163 (54.60%), Postives = 117/163 (71.78%), Query Frame = -3
Query:  309 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDP-AFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 794
            ADAR  V +AR EAAEF +K GY MP DVLAK +A+ +QV TQ A MRPLGV   ++++D+E GP LFK DPAG + G+KATSAG K+ E IN+LEK+ K D       +TV+T I  L S L  DFK++E+++GVV  + P FRVLS+EEI+ HL +I+E+D
Sbjct:   83 ADARAQVSRARSEAAEFEYKNGYPMPCDVLAKRMANIAQVSTQRAAMRPLGVAMTLVAVDDEIGPSLFKLDPAGFYIGYKATSAGPKQTETINWLEKRFKKDGIPSNLTDTVETGIQALMSSLSTDFKSTELQIGVVEDDKP-FRVLSVEEIEAHLQSIAEKD 244          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA6_DICDI (Proteasome subunit alpha type-6 OS=Dictyostelium discoideum GN=psmA6 PE=3 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 3.689e-40
Identity = 83/166 (50.00%), Postives = 120/166 (72.29%), Query Frame = -3
Query:  309 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQT-----AISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 791
            D+++   +A  E A F  K+GY++P +VLAK +AD +Q+ TQHA  RPLGV  +++ ID+E GP+LFK DPAG F G+KAT+AG KEQE+ NFLEKK K++P  +  ET+Q      AISTLQSVL  D K+S++E+G+ + +N +F +++ E+ID  LT ++ERD
Sbjct:   85 DSKSQASRAIQECATFHHKFGYQIPPNVLAKRMADIAQLSTQHASARPLGVAMILIGIDDELGPQLFKVDPAGVFTGYKATAAGEKEQESTNFLEKKFKSNPQLSKDETIQVSLIVMAISTLQSVLGADLKSSDLEIGICTMDNRKFVIMTDEDIDSQLTKLAERD 250          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA6_YEAST (Proteasome component C7-alpha OS=Saccharomyces cerevisiae GN=SCL1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.228e-35
Identity = 81/166 (48.80%), Postives = 115/166 (69.28%), Query Frame = -3
Query:  309 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLE---KKMKND--PAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 791
            DAR    +A+ EAAEFR+KYGY+MP DVLAK +A+ SQ+YTQ AYMRPLGV+   +S+DEE GP ++K DPAG++ G+KAT+ G K+QE    LE   KK K D     ++++ V+ AI+ +   L  +F  +++EVGV +K+  +F  LS E I+E L AI+E+D
Sbjct:   89 DARNAALRAKAEAAEFRYKYGYDMPCDVLAKRMANLSQIYTQRAYMRPLGVILTFVSVDEELGPSIYKTDPAGYYVGYKATATGPKQQEITTNLENHFKKSKIDHINEESWEKVVEFAITHMIDALGTEFSKNDLEVGVATKD--KFFTLSAENIEERLVAIAEQD 252          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA6_CAEEL (Proteasome subunit alpha type-6 OS=Caenorhabditis elegans GN=pas-1 PE=1 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.168e-32
Identity = 67/161 (41.61%), Postives = 109/161 (67.70%), Query Frame = -3
Query:  309 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 791
            DA+  +++A+ EAA +++K GY+MP ++LAK +AD +Q YTQ+A MR LG   + +S D+E GP +++ DPAG++ G K  S G+K+  A +FLEKK+K     T  E ++ AI  LQ+ L  D ++ ++EV VV+K+N +F  L+ ++++ HL  I+ RD
Sbjct:   86 DAKFQIKRAQGEAASWKYKNGYDMPCELLAKKMADLNQYYTQNAEMRSLGCALLFISYDDEKGPEVYRVDPAGYYRGMKGVSVGVKQLPATSFLEKKIKKKSELTSTEAIELAIEALQTSLGIDVRSKDLEVVVVTKDNSKFTKLTSDQVEHHLNQIANRD 246          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_METKA (Proteasome subunit alpha OS=Methanopyrus kandleri GN=psmA PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 5.718e-25
Identity = 66/164 (40.24%), Postives = 96/164 (58.54%), Query Frame = -3
Query:  309 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI--SERD 794
            ADAR LV++AR EA  +R+ YG  + VDVL K I D  QVYTQH  +RP G   ++  +D + G RLF+ DP+G    HKAT+ G   QEA++  E++ + D   T QE ++ A+  L    +E+  A  +E+ VV K+   FR L  ++I+E    +  SE D
Sbjct:   85 ADARVLVERARIEAQTYRYTYGEPIDVDVLVKAICDLKQVYTQHGGVRPFGTALLIAGVDTK-GCRLFETDPSGALTEHKATAIGEGRQEALDVFEEEYRED--MTLQEAIELAVRALYEASREETTADNLEIAVVDKQG--FRKLERKKIEEMFERVVGSEED 243          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_METJA (Proteasome subunit alpha OS=Methanocaldococcus jannaschii GN=psmA PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.656e-22
Identity = 61/179 (34.08%), Postives = 101/179 (56.42%), Query Frame = -3
Query:  258 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQK 794
            ADAR L+ +AR EA  +R  YG E+ +++LAK I D  Q YTQH  +RP GV  ++  ID+    RLF+ DP+G    +KAT+ G      +  LEK+ ++D   T  E ++ AI+ L     ED K   ++V +++ ++ +F+ + +EEI + +  + ++  E   +   N E  K+K
Sbjct:   84 ADARVLIDRARLEAQIYRLTYGEEISIEMLAKKICDIKQAYTQHGGVRPFGVSLLIAGIDKN-EARLFETDPSGALIEYKATAIGSGRPVVMELLEKEYRDD--ITLDEGLELAITALTKA-NEDIKPENVDVCIITVKDAQFKKIPVEEIKKLIEKVKKKLNEENKKEEENREETKEK 258          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA1_TRYBB (Proteasome subunit alpha type-1 OS=Trypanosoma brucei brucei PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 1.116e-20
Identity = 65/166 (39.16%), Postives = 98/166 (59.04%), Query Frame = -3
Query:  315 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSID--EECG---PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTF--QETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 791
            D + LVQ+AR EA+E++++YG  M V VLAK   D +QV TQ A MR +G +   + ++  +E G   P+++  DPAG    H A + G K+ EA  FLEKK KN P  T   +E    A++ LQS L E  +AS +EVG  + ++  F  +S  E+ + LT +++
Sbjct:   83 DGKALVQKARNEASEYKYRYGMPMLVSVLAKPWQDMAQVRTQQAGMRLMGTIMTFVGMEQNDEDGAWIPQIYCVDPAGGAAVH-ACAVGKKQIEACAFLEKKQKNAPFHTLSQKEAAMIALAALQSALGESLRASGVEVGRCTADDHHFLRVSDREVKKWLTPLAK 247          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_PYRHO (Proteasome subunit alpha OS=Pyrococcus horikoshii GN=psmA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.247e-20
Identity = 55/158 (34.81%), Postives = 92/158 (58.23%), Query Frame = -3
Query:  321 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 794
            ADAR LV +AR EA   R  YG   P+ V+ K I D  Q++TQ+  +RP G   ++  ++E+  P L++ DP+G +F  KA + G     A+   E+K K+D   + +E ++ AI  L   +++   A  IEV +++ ++ +FR LS EEI+++L  +
Sbjct:   85 ADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNEK--PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYKDD--MSLEEAIKLAIFALAKTMEKP-SAENIEVAIITVKDKKFRKLSREEIEKYLNEV 237          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_METBF (Proteasome subunit alpha OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=psmA PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 7.234e-20
Identity = 55/168 (32.74%), Postives = 89/168 (52.98%), Query Frame = -3
Query:  291 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSR 794
            ADAR+LV +AR EA   R  Y   + V+V++K I D  Q YTQ+  +RP G   ++  +D+   PRLF+ DP+G    +KAT+ G      +   E + + D        +   +  L    +  F AS +EVG+VS ++ +FR L  EE++ ++  I E+  E  ++
Sbjct:   84 ADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDNL-PRLFETDPSGALLEYKATAIGAGRNAVVEVFEAEYRQD--MNMDAAILLGMDALYRAAEGKFDASTLEVGIVSLQDKKFRKLVPEEVENYVQQILEKHKETENK 248          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_METAC (Proteasome subunit alpha OS=Methanosarcina acetivorans GN=psmA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 9.447e-20
Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = -3
Query:  312 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 794
            ADAR+LV +AR EA   R  Y   + V+V++K I D  Q YTQ+  +RP G   ++  +D+   PRLF+ DP+G    +KAT+ G      +   E   + D        +   +  L    +  F A  +EVGVVS E+ +FR L  EE++ ++  I E+
Sbjct:   82 ADARSLVDRARVEAQVNRVSYDEPIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDN-KPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYRED--MNMDAAILLGMDALYKAAEGKFDAGTLEVGVVSLEDKKFRKLGPEEVENYVQQILEK 239          
The following BLAST results are available for this feature:
BLAST of CN186095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PSA6_SCHPO1.147e-4154.60Probable proteasome subunit alpha type-6 OS=Schizo... [more]
PSA6_DICDI3.689e-4050.00Proteasome subunit alpha type-6 OS=Dictyostelium d... [more]
PSA6_YEAST1.228e-3548.80Proteasome component C7-alpha OS=Saccharomyces cer... [more]
PSA6_CAEEL2.168e-3241.61Proteasome subunit alpha type-6 OS=Caenorhabditis ... [more]
PSMA_METKA5.718e-2540.24Proteasome subunit alpha OS=Methanopyrus kandleri ... [more]
PSMA_METJA2.656e-2234.08Proteasome subunit alpha OS=Methanocaldococcus jan... [more]
PSA1_TRYBB1.116e-2039.16Proteasome subunit alpha type-1 OS=Trypanosoma bru... [more]
PSMA_PYRHO3.247e-2034.81Proteasome subunit alpha OS=Pyrococcus horikoshii ... [more]
PSMA_METBF7.234e-2032.74Proteasome subunit alpha OS=Methanosarcina barkeri... [more]
PSMA_METAC9.447e-2034.16Proteasome subunit alpha OS=Methanosarcina acetivo... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186095 ID=CN186095; Name=CN186095; organism=Citrus sinensis; type=EST; length=799bp
TTTTTTTTTTTTTTTTTCTAAAATTGCCATTCATCATAATAATCACTATG
GCCATGAAAGGCACTTGTCAATAGTCGTTATCAAGCCAATGTAGTAGTAA
AAGTCAACAGCTACCACTAGCACAAAGCACTTCCCCTGGTTGGCACAGCA
TAGTCACATAACTTGTTTTTCAACGTTTTGTTTTCTGCTTTGGAGGGCAA
TGGCTGTGTATTACCGAATGCACTTAAAATTATAAATTCAAGATACAGGG
AAAAGCATTTTTGTTTTTTGGTTTCAGCATTTATGATGGGGCGTGAAACC
ACCTCCTAATCTCGTTCACTTATAGCAGTCAAGTGCTCATCGATCTCCTC
GATGGACAAAACTCTGAATTCTGGATTCTCCTTGCTCACCACGCCAACCT
CAATCTCACTCGCCTTAAAATCCTCTTGCAGGACTGATTGCAGGGTGGAA
ATTGCAGTCTGCACAGTTTCTTGAAAGGTAAACGCAGGATCATTCTTCAT
CTTCTTCTCCAAGAAATTAATTGCCTCTTGCTCCTTCAATCCAGCACTTG
TTGCCTTGTGGCCAAAGAAATGGCCAGCAGGGTCACACTTAAAGAGGCGA
GGTCCACATTCTTCGTCAATACTCAAAACCATAGCAACTACACCAAGTGG
TCTCATATAAGCATGTTGAGTATATACTTGTGATTTGTCTGCAATCCATT
TGGCTAACACATCCACAGGCATTTCATATCCATATTTGAAGCGAAACTCA
GCGGCTTCATATCTTGCCTGCTGAACCAATGTCCTTGCATCAGCTGTCA
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