CN186095

Overview
NameCN186095
Unique NameCN186095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_PYRFU (Proteasome subunit alpha OS=Pyrococcus furiosus GN=psmA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.611e-19
Identity = 53/158 (33.54%), Postives = 92/158 (58.23%), Query Frame = -3
Query:  321 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 794
            ADAR LV +AR EA  +R  YG   PV V+ K I D  Q++TQ+  +RP G   ++  I++   P L++ DP+G +F  KA + G     A+   E+K ++D     ++ ++ A+  L   + E+  A  IEV V++ ++ +FR L+ +EI+++L+ +
Sbjct:   85 ADARVLVNRARLEAQIYRLTYGEPAPVSVIVKKICDLKQMHTQYGGVRPFGAALLMAGINDR--PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEEKYRDD--MNLEDAIKLALMALAKTM-ENPSADNIEVAVITVKDKKFRKLTRDEIEKYLSEV 237          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_METTE (Proteasome subunit alpha OS=Methanosarcina thermophila GN=psmA PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.611e-19
Identity = 56/168 (33.33%), Postives = 87/168 (51.79%), Query Frame = -3
Query:  291 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSR 794
            ADAR LV +AR EA   R  Y   + V+V++K I D  Q YTQ+  +RP G   ++  +D++  PRLF+ DP+G    +KAT+ G      +   E   K D     +  +   +  L    +  F A  +EVGVVS ++ +FR L  EE+  ++  I E+  E  ++
Sbjct:   82 ADARALVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDK-RPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYKED--MNIEAAILLGMDALYKAAEGKFDAGTLEVGVVSLQDKKFRKLEPEEVGNYVQQILEKHKETENK 246          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_THESM (Proteasome subunit alpha OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=psmA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.105e-19
Identity = 53/151 (35.10%), Postives = 89/151 (58.94%), Query Frame = -3
Query:  342 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEI 794
            ADAR LV +AR EA  +R  YG  +P+ VL K I D  Q++TQ+  +RP G   ++  ++E+  P LF+ DP+G +F  KA + G     A+   E+K +++   T +E ++ A+  L  +++E    S IEV V+S +  +F+ ++ EE+
Sbjct:   85 ADARVLVDRARLEAQIYRLTYGEPVPLTVLVKKICDLKQMHTQYGGVRPFGAALLMAGVNEK--PELFETDPSGAYFEWKAVAIGSGRNTAMAIFEEKYRDE--MTLEEAIKLAVLALSKIMEEPSPES-IEVAVISVKEKKFKKITPEEV 230          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_METMA (Proteasome subunit alpha OS=Methanosarcina mazei GN=psmA PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.105e-19
Identity = 55/161 (34.16%), Postives = 84/161 (52.17%), Query Frame = -3
Query:  312 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 794
            ADAR+LV +AR EA   R  Y   + V+V++K I D  Q YTQ+  +RP G   ++  +D+   PRLF+ DP+G    +KAT+ G      +   E   + D        +   +  L    +  F A  +EVGVVS E+ +FR L  EE++ ++  I E+
Sbjct:   84 ADARSLVDRARVEAQVNRVSYDELIGVEVISKKICDHKQTYTQYGGVRPYGTALLIAGVDDN-KPRLFETDPSGALLEYKATAIGAGRNAVVEVFEADYRED--MNIDAAILLGMDALYKAAEGKFDAGTLEVGVVSLEDKKFRKLGPEEVENYVHQILEK 241          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAB (Proteasome subunit alpha OS=Pyrococcus abyssi GN=psmA PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.689e-19
Identity = 55/155 (35.48%), Postives = 88/155 (56.77%), Query Frame = -3
Query:  330 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 794
            ADAR LV +AR EA   R  YG   P+ V+ K I D  Q++TQ+  +RP G   ++  ++++  P L++ DP+G +F  KA + G     A+   E K ++D   T  E ++ AI  L   +++   A  IEV V++ ++ +FR LS EEI++ L
Sbjct:   85 ADARVLVNRARLEAQIHRLTYGEPAPLAVIVKKICDLKQMHTQYGGVRPFGAALLMAGVNDK--PELYETDPSGAYFAWKAVAIGSGRNTAMAIFEDKYRDD--MTLDEAIKLAIFALAKTMEKP-SAENIEVAVITVKDKKFRKLSKEEIEKFL 234          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA7_RAT (Proteasome subunit alpha type-7 OS=Rattus norvegicus GN=Psma7 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 3.039e-18
Identity = 59/180 (32.78%), Postives = 93/180 (51.67%), Query Frame = -3
Query:  258 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQK 797
            TADAR ++ +AR E    R   G  + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   +D   T   T++  I  L  V+Q   K   IE+ V+ ++ P  ++LS EEI++++  I +   E         E KKQK
Sbjct:   83 TADARIVINRARVECQSHRLTVGDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDDAIETDDLTIKLVIKALLEVVQSGGK--NIELAVMRRDQP-LKILSPEEIEKYVAEIEKEKEE--------NEKKKQK 251          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_METM5 (Proteasome subunit alpha OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=psmA PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 5.184e-18
Identity = 56/161 (34.78%), Postives = 84/161 (52.17%), Query Frame = -3
Query:  312 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 794
            ADAR L+ +AR EA   R  YG  + V+ LAK I D  Q YTQH   RP G+  ++  ID     RLF+ DP+G    +KAT+ G     A+  LE K   D   T  E ++ A+  L S   E+ K   I++ +V         +S++EI++ + A+ ++
Sbjct:   85 ADARVLIDRARLEAQMNRISYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRH-SARLFETDPSGALIEYKATAIGSGRPIAMEVLESKYSED--MTVNEGMELALYAL-SKTTEELKPENIDMAIVKDSGKLVEKISVDEIEKIVKAVYKK 241          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_METMP (Proteasome subunit alpha OS=Methanococcus maripaludis GN=psmA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.770e-18
Identity = 56/161 (34.78%), Postives = 84/161 (52.17%), Query Frame = -3
Query:  312 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 794
            ADAR L+ +AR EA   R  YG  + V+ LAK I D  Q YTQH   RP G+  ++  ID     RLF+ DP+G    +KAT+ G     A+  LE K   D   T  E ++ A+  L S   E+ K   I++ ++         +S++EI++ + A+ E+
Sbjct:   85 ADARVLIDRARIEAQMNRVSYGEAITVEALAKKICDIKQAYTQHGGARPFGLALLITGIDRH-SARLFETDPSGALIEYKATAIGSGRPIAMEVLESKY--DENMTVSEGMELALYAL-SKTTEELKPENIDMAIIKDSGKLVEKISVDEIEKIVKAVYEK 241          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_ARCFU (Proteasome subunit alpha OS=Archaeoglobus fulgidus GN=psmA PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.770e-18
Identity = 53/168 (31.55%), Postives = 90/168 (53.57%), Query Frame = -3
Query:  291 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSR 794
            ADAR L+ +AR EA   R  Y   + V  LAK I D  Q YTQ+  +RP GV  ++  +DE   P+L++ DP+G    +KAT+ G+       F EK+ ++D   +F + +   +  +   ++ +     IEVG V  ++  F+ +S EE+  ++   +ER  E++ +
Sbjct:   83 ADARVLIDRARIEAQINRLTYDEPITVKELAKKICDFKQQYTQYGGVRPFGVSLLIAGVDEV--PKLYETDPSGALLEYKATAIGMGRNAVTEFFEKEYRDD--LSFDDAMVLGLVAMGLSIESELVPENIEVGYVKVDDRTFKEVSPEELKPYVERANERIRELLKK 246          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_THEAC (Proteasome subunit alpha OS=Thermoplasma acidophilum GN=psmA PE=1 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 8.843e-18
Identity = 56/155 (36.13%), Postives = 87/155 (56.13%), Query Frame = -3
Query:  330 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 794
            ADAR LV  AR  A + +  YG  + ++ L K +AD+ Q YTQ+  +RP GV  +   ID + GPRLF CDPAG    +KAT+ G  +   ++FLE++ K +     +E V   I  L+S L+E  +    E+  ++  N ++R+   EE+ + L
Sbjct:   83 ADARVLVDFARISAQQEKVTYGSLVNIENLVKRVADQMQQYTQYGGVRPYGVSLIFAGID-QIGPRLFDCDPAGTINEYKATAIGSGKDAVVSFLEREYKEN--LPEKEAVTLGIKALKSSLEEGEELKAPEIASITVGN-KYRIYDQEEVKKFL 233          
The following BLAST results are available for this feature:
BLAST of CN186095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PSMA_PYRFU1.611e-1933.54Proteasome subunit alpha OS=Pyrococcus furiosus GN... [more]
PSMA_METTE1.611e-1933.33Proteasome subunit alpha OS=Methanosarcina thermop... [more]
PSMA_THESM2.105e-1935.10Proteasome subunit alpha OS=Thermococcus sibiricus... [more]
PSMA_METMA2.105e-1934.16Proteasome subunit alpha OS=Methanosarcina mazei G... [more]
PSMA_PYRAB4.689e-1935.48Proteasome subunit alpha OS=Pyrococcus abyssi GN=p... [more]
PSA7_RAT3.039e-1832.78Proteasome subunit alpha type-7 OS=Rattus norvegic... [more]
PSMA_METM55.184e-1834.78Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_METMP6.770e-1834.78Proteasome subunit alpha OS=Methanococcus maripalu... [more]
PSMA_ARCFU6.770e-1831.55Proteasome subunit alpha OS=Archaeoglobus fulgidus... [more]
PSMA_THEAC8.843e-1836.13Proteasome subunit alpha OS=Thermoplasma acidophil... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186095 ID=CN186095; Name=CN186095; organism=Citrus sinensis; type=EST; length=799bp
TTTTTTTTTTTTTTTTTCTAAAATTGCCATTCATCATAATAATCACTATG
GCCATGAAAGGCACTTGTCAATAGTCGTTATCAAGCCAATGTAGTAGTAA
AAGTCAACAGCTACCACTAGCACAAAGCACTTCCCCTGGTTGGCACAGCA
TAGTCACATAACTTGTTTTTCAACGTTTTGTTTTCTGCTTTGGAGGGCAA
TGGCTGTGTATTACCGAATGCACTTAAAATTATAAATTCAAGATACAGGG
AAAAGCATTTTTGTTTTTTGGTTTCAGCATTTATGATGGGGCGTGAAACC
ACCTCCTAATCTCGTTCACTTATAGCAGTCAAGTGCTCATCGATCTCCTC
GATGGACAAAACTCTGAATTCTGGATTCTCCTTGCTCACCACGCCAACCT
CAATCTCACTCGCCTTAAAATCCTCTTGCAGGACTGATTGCAGGGTGGAA
ATTGCAGTCTGCACAGTTTCTTGAAAGGTAAACGCAGGATCATTCTTCAT
CTTCTTCTCCAAGAAATTAATTGCCTCTTGCTCCTTCAATCCAGCACTTG
TTGCCTTGTGGCCAAAGAAATGGCCAGCAGGGTCACACTTAAAGAGGCGA
GGTCCACATTCTTCGTCAATACTCAAAACCATAGCAACTACACCAAGTGG
TCTCATATAAGCATGTTGAGTATATACTTGTGATTTGTCTGCAATCCATT
TGGCTAACACATCCACAGGCATTTCATATCCATATTTGAAGCGAAACTCA
GCGGCTTCATATCTTGCCTGCTGAACCAATGTCCTTGCATCAGCTGTCA
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