CN186095

Overview
NameCN186095
Unique NameCN186095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_SULIA (Proteasome subunit alpha OS=Sulfolobus islandicus (strain M.16.27) GN=psmA PE=3 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.715e-16
Identity = 49/157 (31.21%), Postives = 83/157 (52.87%), Query Frame = -3
Query:  330 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ--EDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 794
            +D R L+  AR  A + R  Y   + +D L K +AD  Q+YTQH  +RP GV  ++  ID+   P+L+  +P+G +  ++A + G     A  FLEK  K D   T ++T+  A+  L + L+  E    + +E+G  S +   F  ++ E+ + +L
Sbjct:   85 SDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSV-PKLYMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKED--LTIEDTILLALKALSATLKPNEKLTPNTVEIGYASTQTGLFLKMTSEDKNMYL 238          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA7_CARAU (Proteasome subunit alpha type-7 OS=Carassius auratus GN=psma7 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.715e-16
Identity = 55/180 (30.56%), Postives = 90/180 (50.00%), Query Frame = -3
Query:  258 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQK 797
            TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   ++   +  + ++ AI  L  V+Q   K   IE+ V+ +  P  ++L  +EI+  +  I +   E        AE KKQK
Sbjct:   79 TADARIVINRARVECQSHRLTVEDPVTVEYITRYIATLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTDEAIASDNDAIKLAIKALLEVVQSGGK--NIELAVIRRNQP-LKILESKEIETLVAEIEKEKEE-------EAEKKKQK 248          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_SULSO (Proteasome subunit alpha OS=Sulfolobus solfataricus GN=psmA PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.852e-16
Identity = 50/157 (31.85%), Postives = 82/157 (52.23%), Query Frame = -3
Query:  330 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ--EDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 794
            +D R L+  AR  A + R  Y   + +D L K +AD  Q+YTQH  +RP GV  ++  ID+   P+LF  +P+G +  ++A + G     A  FLEK  K D     +ET+  A+  L + L+  E    + +E+G  S +   F  ++ E+ + +L
Sbjct:   85 SDGRVLIDYARNIALQHRLIYDEPVSIDYLTKSVADVKQMYTQHGGVRPFGVALVIAGIDKSV-PKLFMTEPSGQYMPYQAVAIGQGYYTATEFLEKNYKED--LNVEETILLALKALSATLKPNEKLTPNTVEIGYASTQTGLFLKMTNEDKNMYL 238          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA7L_MOUSE (Proteasome subunit alpha type-7-like OS=Mus musculus GN=Psma8 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.852e-16
Identity = 50/164 (30.49%), Postives = 87/164 (53.05%), Query Frame = -3
Query:  309 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS-ERD 797
            TADAR ++ +AR E    +      + V+ + ++IA   Q YTQ    RP G+ A+++  D++  PRL++ DP+G +   KA + G   +    FLEK    D     +E ++ AI  L  V+Q   K   IE+ ++ ++ P  ++ S +EI+  ++ I  E+D
Sbjct:   79 TADARVVISRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGIPRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAISNDKEAIKLAIKALLEVVQSGGK--NIELAIIRRDQP-LKMFSAKEIELEVSEIEREKD 239          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA7L_HUMAN (Proteasome subunit alpha type-7-like OS=Homo sapiens GN=PSMA8 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 6.337e-16
Identity = 53/180 (29.44%), Postives = 90/180 (50.00%), Query Frame = -3
Query:  258 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQK 797
            TADAR ++ +AR E    +      + V+ + ++IA   Q YTQ    RP G+ A+++  D++   RL++ DP+G +   KA + G   +    FLEK    D   +  E ++ AI  L  V+Q   K   IE+ ++ +  P  ++ S +E++ ++T I +   E        AE KK K
Sbjct:   85 TADARVVINRARVECQSHKLTVEDPVTVEYITRFIATLKQKYTQSNGRRPFGISALIVGFDDDGISRLYQTDPSGTYHAWKANAIGRSAKTVREFLEKNYTEDAIASDSEAIKLAIKALLEVVQSGGK--NIELAIIRRNQP-LKMFSAKEVELYVTEIEKEKEE--------AEKKKSK 253          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA2_CARAU (Proteasome subunit alpha type-2 OS=Carassius auratus GN=psma2 PE=2 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 6.337e-16
Identity = 54/158 (34.18%), Postives = 82/158 (51.90%), Query Frame = -3
Query:  318 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 791
            D R LV++AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   DE+  P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+   +       IEVG+ ++    FR LS  E+ ++L AI+
Sbjct:   82 DYRVLVRRARKLAQQYFLVYQEPIPTGQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDED-RPYLFQSDPSGAYFAWKATAMGKSYVNGKTFLEKRYNED--LELEDAIHTAILTLKESFEGQMTEENIEVGICNEAG--FRRLSPAEVKDYLAAIA 234          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_METVS (Proteasome subunit alpha OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=psmA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.276e-16
Identity = 57/179 (31.84%), Postives = 89/179 (49.72%), Query Frame = -3
Query:  258 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQK 794
            ADAR L+ +AR EA   R  YG  + V+ LAK I D  Q YT H   RP G+  ++  ID     RLF+ DP+G    +KAT+ G     A+  LE+K   D   +  E ++ AI  L S   E+ K   I++ +V         +++ EI++ +  + ++        + N E +K+K
Sbjct:   85 ADARVLIDRARVEAQVNRISYGEAITVEALAKKICDIKQAYTHHGGARPFGLALLITGIDRH-SARLFETDPSGALIEYKATAIGSGRPVAMEILEEKY--DENMSVSEGMELAIYAL-SKTTEELKPENIDMAIVKDTGKLVEKITVFEIEKIVKKVYDK------IKVENEEAEKKK 253          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_METPE (Proteasome subunit alpha OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=psmA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.276e-16
Identity = 46/159 (28.93%), Postives = 83/159 (52.20%), Query Frame = -3
Query:  315 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 791
            DAR+LV +AR E+   R  Y  ++ V++L+K + D  Q YTQ    RP G   ++  I +    RLF+ DP+G    +KAT  G+     +   E++   +P  + ++ +   +  L +  +  F  + +E+GVV+ + P FR +S +E+   +  I +
Sbjct:   85 DARSLVDRARVESQVNRVSYDEQIDVEMLSKKLCDHMQTYTQFGGARPYGTALLIAGISDG-QFRLFETDPSGTLLEYKATGIGIGRNAVMKVFEEEY--NPEASIRDAILLGLKALHAATEGKFDVNTVEIGVVNNDTPAFRKMSRQEVASFVEQIEQ 240          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_METMJ (Proteasome subunit alpha OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=psmA PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.276e-16
Identity = 51/159 (32.08%), Postives = 77/159 (48.43%), Query Frame = -3
Query:  315 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 791
            DAR+LV +AR E+   R  Y   + V++LAK + D  Q YTQ    RP G   ++  + +    RLF+ DP+G    +KAT  G      I   E + + D    F   ++  I  L +  +     S IE+GVVS E  EFR +  +E+  ++    E
Sbjct:   85 DARSLVDRARVESQINRVSYNEPINVEILAKKLCDHMQTYTQFGGARPYGTALLIAGVSDG-EARLFETDPSGTLLEYKATGIGTGRPAVIKTFEDEYQEDA--DFSGAIRLGIKALHAATEGKLDVSAIEIGVVSIETGEFRKMEKDEVKAYVDQFEE 240          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA7_HUMAN (Proteasome subunit alpha type-7 OS=Homo sapiens GN=PSMA7 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 8.276e-16
Identity = 54/180 (30.00%), Postives = 89/180 (49.44%), Query Frame = -3
Query:  258 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQK 797
            TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +    FLEK   ++   T   T++  I  L  V+Q   K  E+    V + +   ++L+ EEI++++  I +   E         E KKQK
Sbjct:   77 TADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSNGRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVREFLEKNYTDEAIETDDLTIKLVIKALLEVVQSGGKNIEL---AVMRRDQSLKILNPEEIEKYVAEIEKEKEE--------NEKKKQK 245          
The following BLAST results are available for this feature:
BLAST of CN186095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PSMA_SULIA3.715e-1631.21Proteasome subunit alpha OS=Sulfolobus islandicus ... [more]
PSA7_CARAU3.715e-1630.56Proteasome subunit alpha type-7 OS=Carassius aurat... [more]
PSMA_SULSO4.852e-1631.85Proteasome subunit alpha OS=Sulfolobus solfataricu... [more]
PSA7L_MOUSE4.852e-1630.49Proteasome subunit alpha type-7-like OS=Mus muscul... [more]
PSA7L_HUMAN6.337e-1629.44Proteasome subunit alpha type-7-like OS=Homo sapie... [more]
PSA2_CARAU6.337e-1634.18Proteasome subunit alpha type-2 OS=Carassius aurat... [more]
PSMA_METVS8.276e-1631.84Proteasome subunit alpha OS=Methanococcus vannieli... [more]
PSMA_METPE8.276e-1628.93Proteasome subunit alpha OS=Methanosphaerula palus... [more]
PSMA_METMJ8.276e-1632.08Proteasome subunit alpha OS=Methanoculleus marisni... [more]
PSA7_HUMAN8.276e-1630.00Proteasome subunit alpha type-7 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186095 ID=CN186095; Name=CN186095; organism=Citrus sinensis; type=EST; length=799bp
TTTTTTTTTTTTTTTTTCTAAAATTGCCATTCATCATAATAATCACTATG
GCCATGAAAGGCACTTGTCAATAGTCGTTATCAAGCCAATGTAGTAGTAA
AAGTCAACAGCTACCACTAGCACAAAGCACTTCCCCTGGTTGGCACAGCA
TAGTCACATAACTTGTTTTTCAACGTTTTGTTTTCTGCTTTGGAGGGCAA
TGGCTGTGTATTACCGAATGCACTTAAAATTATAAATTCAAGATACAGGG
AAAAGCATTTTTGTTTTTTGGTTTCAGCATTTATGATGGGGCGTGAAACC
ACCTCCTAATCTCGTTCACTTATAGCAGTCAAGTGCTCATCGATCTCCTC
GATGGACAAAACTCTGAATTCTGGATTCTCCTTGCTCACCACGCCAACCT
CAATCTCACTCGCCTTAAAATCCTCTTGCAGGACTGATTGCAGGGTGGAA
ATTGCAGTCTGCACAGTTTCTTGAAAGGTAAACGCAGGATCATTCTTCAT
CTTCTTCTCCAAGAAATTAATTGCCTCTTGCTCCTTCAATCCAGCACTTG
TTGCCTTGTGGCCAAAGAAATGGCCAGCAGGGTCACACTTAAAGAGGCGA
GGTCCACATTCTTCGTCAATACTCAAAACCATAGCAACTACACCAAGTGG
TCTCATATAAGCATGTTGAGTATATACTTGTGATTTGTCTGCAATCCATT
TGGCTAACACATCCACAGGCATTTCATATCCATATTTGAAGCGAAACTCA
GCGGCTTCATATCTTGCCTGCTGAACCAATGTCCTTGCATCAGCTGTCA
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