CN186095

Overview
NameCN186095
Unique NameCN186095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA1_CHICK (Proteasome subunit alpha type-1 OS=Gallus gallus GN=PSMA1 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 8.276e-16
Identity = 51/164 (31.10%), Postives = 81/164 (49.39%), Query Frame = -3
Query:  312 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL--QEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 797
            TADAR L    R E  + RF +   +PV  L   I  K+Q+ TQ    RP GV  ++   D + GP +F+  P+ ++F  KA S G + Q A N+LE+ M         E V+  +  L+  L  ++D     + +G+V K+  EF +   +++   L  + ER
Sbjct:   77 TADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCKAMSIGARSQSARNYLERHMTEFTDCNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD-MEFTIYDDDDVAPFLEGLEER 238          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_THEON (Proteasome subunit alpha OS=Thermococcus onnurineus (strain NA1) GN=psmA PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.412e-15
Identity = 50/160 (31.25%), Postives = 85/160 (53.12%), Query Frame = -3
Query:  315 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 794
            ADAR LV +AR EA  +R  YG  +P+ VL K I D  Q +TQ+  +RP G   ++  ++++  P L++ DP+G +F  +A + G     A+   E    +D     +  ++ AI  L   L+E    S IEV  ++ ++  ++ +  EE+ ++L  I E
Sbjct:   85 ADARVLVDRARLEAQVYRLTYGEPVPLTVLVKKICDLKQAHTQYGGVRPFGAALLMAGVNDK--PELYETDPSGAYFEWRAVAIGSGRNTAMAIFEDHYSDD--LDMEGAIKLAILALAKTLEEPSPES-IEVAYITMKDKRWKKMDKEEVAKYLGEILE 239          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA1_ORYSJ (Proteasome subunit alpha type-1 OS=Oryza sativa subsp. japonica GN=PAF1 PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.412e-15
Identity = 51/159 (32.08%), Postives = 87/159 (54.72%), Query Frame = -3
Query:  336 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ-EDFKASEIEVGVVSKEN----PEFRVLSIEEIDE 797
            TAD R L +  R E     F Y   +PV  LA  +ADK+QV TQ ++ RP GV  +V  +DE  G  L+   P+G++F ++A + G + Q A  FLE++ +    +T ++ ++ A+S ++  LQ E   +S   V +V +++      F ++ ++ I E
Sbjct:   78 TADGRVLSRFLRSECINHAFVYDAPLPVSRLALRLADKAQVCTQRSWKRPYGVGLLVAGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTFLERRFEGYNDYTPEQLIKDALSAIKETLQGEKLTSSNCTVAIVGRKDDGTVEPFEMIDVKRIQE 235          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA1_HALVO (Proteasome subunit alpha 1 OS=Halobacterium volcanii GN=psmA1 PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.844e-15
Identity = 51/157 (32.48%), Postives = 80/157 (50.96%), Query Frame = -3
Query:  324 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTA 794
            ADAR L+  AR+++   R +YG  + ++ L K + D  Q YTQ    RP GV  ++  + E   PRL++ DP+G  +  KA S G    +    LE+  ++D   T  E ++ A+  + S   E      ++V  VS E   F  LS +EI+ +L A
Sbjct:   85 ADARQLIDFARHQSQVNRLRYGEPIGIETLTKEVTDHIQQYTQVGGARPFGVALLIGGV-ENGTPRLYETDPSGTPYEWKAVSIGADRGDHQEHLEENFRDD--LTLDEGIELALEAIASTSDEGTAPDGVDVATVSAETERFVELSNDEIESYLEA 238          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA7_CICAR (Proteasome subunit alpha type-7 OS=Cicer arietinum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 4.108e-15
Identity = 56/153 (36.60%), Postives = 77/153 (50.33%), Query Frame = -3
Query:  339 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEID 794
            ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D   G P L++ DP+G F   KA + G        FLEK  K       QETV+ AI  L  V++   K   IEV V++KEN   R L   EID
Sbjct:   79 ADARVLINRARVECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTGSPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNFKETSG---QETVKLAIRALLEVVESGGK--NIEVAVMTKEN-GLRQLEEAEID 225          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_PYRAE (Proteasome subunit alpha OS=Pyrobaculum aerophilum GN=psmA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  321 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 794
            ADAR L+  AR  A   RF Y   + V+ L K + +  Q YTQ    RP GV  ++  +D   G RL++ DP+G + G+ AT+ G +      FLEK  K D      E ++ A+  L S + E   ++ +EV   + E  + R +S +E+   LT +
Sbjct:   84 ADARILIDYARDVALSHRFIYDEPIDVEFLTKAVCNLKQQYTQFGGARPFGVALLIAGVDRH-GARLYQTDPSGVYIGYFATAIGAESGTITEFLEKNYKFD--MEMGECIELALKALASAV-EITDSANVEVAYATIEEKKMRKMSQDEVASLLTKL 237          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_AERPE (Proteasome subunit alpha OS=Aeropyrum pernix GN=psmA PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 45/168 (26.79%), Postives = 85/168 (50.60%), Query Frame = -3
Query:  315 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASE---------IEVGVVSKENPEFRVLSIEEIDEHLTAISE 791
            D R L+  AR      R  YG   PV+++AK +AD  Q YTQH  +RP GV  +   ++ +   ++++ DP G +F  KA + G  EQ A    EK  ++D   + +E  + A+  L +++++  +  E         +E+  ++ +   F  ++ E++ E + ++ E
Sbjct:   88 DGRILIDYARVFTVRHRLLYGEPPPVELVAKVVADVKQAYTQHGGVRPFGVALIFAGVNPDGTTKVYRTDPGGQYFSFKAIAIGSGEQVANEMFEKHYRSD--MSLEEATKLALKILYAIIRKTVEDKEKAIATLPDQVELAYITVKERMFTKMTKEQVKEIVDSMRE 253          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA1_MOUSE (Proteasome subunit alpha type-1 OS=Mus musculus GN=Psma1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = -3
Query:  312 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL--QEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 797
            TADAR L    R E  + RF +   +PV  L   I  K+Q+ TQ    RP GV  ++   D + GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L  ++D     + +G+V K+  EF +   +++   L  + ER
Sbjct:   78 TADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD-LEFTIYDDDDVSPFLDGLEER 239          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA1_MACFA (Proteasome subunit alpha type-1 OS=Macaca fascicularis GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = -3
Query:  312 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL--QEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 797
            TADAR L    R E  + RF +   +PV  L   I  K+Q+ TQ    RP GV  ++   D + GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L  ++D     + +G+V K+  EF +   +++   L  + ER
Sbjct:   78 TADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD-LEFTIYDDDDVSPFLEGLEER 239          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA1_HUMAN (Proteasome subunit alpha type-1 OS=Homo sapiens GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = -3
Query:  312 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL--QEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 797
            TADAR L    R E  + RF +   +PV  L   I  K+Q+ TQ    RP GV  ++   D + GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L  ++D     + +G+V K+  EF +   +++   L  + ER
Sbjct:   78 TADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD-LEFTIYDDDDVSPFLEGLEER 239          
The following BLAST results are available for this feature:
BLAST of CN186095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PSA1_CHICK8.276e-1631.10Proteasome subunit alpha type-1 OS=Gallus gallus G... [more]
PSMA_THEON1.412e-1531.25Proteasome subunit alpha OS=Thermococcus onnurineu... [more]
PSA1_ORYSJ1.412e-1532.08Proteasome subunit alpha type-1 OS=Oryza sativa su... [more]
PSMA1_HALVO1.844e-1532.48Proteasome subunit alpha 1 OS=Halobacterium volcan... [more]
PSA7_CICAR4.108e-1536.60Proteasome subunit alpha type-7 OS=Cicer arietinum... [more]
PSMA_PYRAE5.365e-1532.91Proteasome subunit alpha OS=Pyrobaculum aerophilum... [more]
PSMA_AERPE5.365e-1526.79Proteasome subunit alpha OS=Aeropyrum pernix GN=ps... [more]
PSA1_MOUSE5.365e-1529.88Proteasome subunit alpha type-1 OS=Mus musculus GN... [more]
PSA1_MACFA5.365e-1529.88Proteasome subunit alpha type-1 OS=Macaca fascicul... [more]
PSA1_HUMAN5.365e-1529.88Proteasome subunit alpha type-1 OS=Homo sapiens GN... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186095 ID=CN186095; Name=CN186095; organism=Citrus sinensis; type=EST; length=799bp
TTTTTTTTTTTTTTTTTCTAAAATTGCCATTCATCATAATAATCACTATG
GCCATGAAAGGCACTTGTCAATAGTCGTTATCAAGCCAATGTAGTAGTAA
AAGTCAACAGCTACCACTAGCACAAAGCACTTCCCCTGGTTGGCACAGCA
TAGTCACATAACTTGTTTTTCAACGTTTTGTTTTCTGCTTTGGAGGGCAA
TGGCTGTGTATTACCGAATGCACTTAAAATTATAAATTCAAGATACAGGG
AAAAGCATTTTTGTTTTTTGGTTTCAGCATTTATGATGGGGCGTGAAACC
ACCTCCTAATCTCGTTCACTTATAGCAGTCAAGTGCTCATCGATCTCCTC
GATGGACAAAACTCTGAATTCTGGATTCTCCTTGCTCACCACGCCAACCT
CAATCTCACTCGCCTTAAAATCCTCTTGCAGGACTGATTGCAGGGTGGAA
ATTGCAGTCTGCACAGTTTCTTGAAAGGTAAACGCAGGATCATTCTTCAT
CTTCTTCTCCAAGAAATTAATTGCCTCTTGCTCCTTCAATCCAGCACTTG
TTGCCTTGTGGCCAAAGAAATGGCCAGCAGGGTCACACTTAAAGAGGCGA
GGTCCACATTCTTCGTCAATACTCAAAACCATAGCAACTACACCAAGTGG
TCTCATATAAGCATGTTGAGTATATACTTGTGATTTGTCTGCAATCCATT
TGGCTAACACATCCACAGGCATTTCATATCCATATTTGAAGCGAAACTCA
GCGGCTTCATATCTTGCCTGCTGAACCAATGTCCTTGCATCAGCTGTCA
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