CN186095

Overview
NameCN186095
Unique NameCN186095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA1_BOVIN (Proteasome subunit alpha type-1 OS=Bos taurus GN=PSMA1 PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 5.365e-15
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = -3
Query:  312 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL--QEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 797
            TADAR L    R E  + RF +   +PV  L   I  K+Q+ TQ    RP GV  ++   D + GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L  ++D     + +G+V K+  EF +   +++   L  + ER
Sbjct:   78 TADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD-LEFTIYDDDDVSPFLEGLEER 239          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA7_CAEEL (Proteasome subunit alpha type-7 OS=Caenorhabditis elegans GN=pas-4 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.006e-15
Identity = 53/181 (29.28%), Postives = 92/181 (50.83%), Query Frame = -3
Query:  261 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEF--RVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQ 797
            +ADAR LV +AR E   ++      + V  ++++IA+  Q +TQ    RP G+  ++   D +  PRLFK +P+G ++ + A + G  E+    +LE++   +       T++  + +L  V+     +  IE+ V+ K N E   RVLS EEI+  L  +     E V+     A +KK+
Sbjct:   78 SADARVLVDRARIECQSYKLTLEDPVTVAYISRYIANTKQRFTQSPGRRPFGISMLIGGFDHDGTPRLFKTEPSGAYYEYVANATGRGEKPVREYLEEQYSEENTVDEATTLKLVVKSLAQVVPPG--SQNIEIAVMKKVNDELQQRVLSTEEIEALLKVVET---ERVAAEAEEAASKKK 253          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA1_RAT (Proteasome subunit alpha type-1 OS=Rattus norvegicus GN=Psma1 PE=1 SV=2)

HSP 1 Score: 81.2629 bits (199), Expect = 7.006e-15
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = -3
Query:  312 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL--QEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 797
            TADAR L    R E  + RF +   +PV  L   I  K+Q+ TQ    RP GV  ++   D + GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L  ++D     + +G+V K+  EF +   +++   L  + ER
Sbjct:   78 TADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHVFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMQCNLDELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD-LEFTIYDDDDVSPFLDGLEER 239          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA2_XENLA (Proteasome subunit alpha type-2 OS=Xenopus laevis GN=psma2 PE=2 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 9.151e-15
Identity = 52/158 (32.91%), Postives = 81/158 (51.27%), Query Frame = -3
Query:  318 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 791
            D R LV++AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   DE   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+   +       IEVG+ ++    F+ L+  E+ ++L AI+
Sbjct:   82 DYRVLVRRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLIAGWDEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FKRLTPAEVKDYLAAIA 234          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA1_PONAB (Proteasome subunit alpha type-1 OS=Pongo abelii GN=PSMA1 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 9.151e-15
Identity = 49/164 (29.88%), Postives = 80/164 (48.78%), Query Frame = -3
Query:  312 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL--QEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISER 797
            TADAR L    R E  + RF +   +PV  L   I  K+Q+ TQ    RP GV  ++   D + GP +F+  P+ ++F  +A S G + Q A  +LE+ M         E V+  +  L+  L  ++D     + +G+V K+  EF +   +++   L  + ER
Sbjct:   78 TADARLLCNFMRQECLDSRFVFDRPLPVSRLVSLIGSKTQIPTQRYGRRPYGVGLLIAGYD-DMGPHIFQTCPSANYFDCRAMSIGARSQSARTYLERHMSEFMECNLNELVKHGLRALRETLPAEQDLTTKNVSIGIVGKD-LEFTIHDDDDVSPFLEGLEER 239          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA7_SOLLC (Proteasome subunit alpha type-7 OS=Solanum lycopersicum GN=PAD1 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.195e-14
Identity = 55/153 (35.95%), Postives = 77/153 (50.33%), Query Frame = -3
Query:  339 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEID 794
            ADAR LV +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D   G P L++ DP+G F   KA + G        FLEK  K       QETV+ AI  L  V++   K   IEV V++KE+   + L   EID
Sbjct:   79 ADARVLVNKARIECQSHRLTVEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIIGFDPHTGVPSLYQTDPSGTFSAWKANATGRNSNSTREFLEKNYKETSG---QETVKLAIRALLEVVESGGK--NIEVAVMTKEH-GLKQLEEAEID 225          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA7A_ARATH (Proteasome subunit alpha type-7-A OS=Arabidopsis thaliana GN=PAD1 PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.195e-14
Identity = 53/153 (34.64%), Postives = 76/153 (49.67%), Query Frame = -3
Query:  339 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEID 794
            ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D     P L++ DP+G F   KA + G        FLEK  K       QETV+ AI  L  V++   K   IEV V+++E    + L  EEID
Sbjct:   79 ADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYTRIPALYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKESAG---QETVKLAIRALLEVVESGGK--NIEVAVMTREEGVLKQLEEEEID 226          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA7_CHICK (Proteasome subunit alpha type-7 OS=Gallus gallus GN=PSMA7 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.561e-14
Identity = 54/180 (30.00%), Postives = 88/180 (48.89%), Query Frame = -3
Query:  258 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD*EVVSRPIINAETKKQK 797
            TADAR ++ +AR E    R      + V+ + ++IA   Q YTQ    RP G+ A+++  D +  PRL++ DP+G +   KA + G   +      EK   ++   T   T++  I  L  V+Q   K   IE+ V+ ++ P   + S EEI++++  I +   E         E KKQK
Sbjct:   77 TADARIVINRARVECQSHRLTVEDPVTVEYITRYIASLKQRYTQSKRRRPFGISALIVGFDFDGTPRLYQTDPSGTYHAWKANAIGRGAKSVRVEFEKNYTDEAIETDDLTIKLVIKALLEVVQSGGK--NIELAVMRRDQPLKILTSPEEIEKYVAEIEKEKEE--------NEKKKQK 246          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA1B_ARATH (Proteasome subunit alpha type-1-B OS=Arabidopsis thaliana GN=PAF2 PE=1 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.561e-14
Identity = 52/155 (33.55%), Postives = 84/155 (54.19%), Query Frame = -3
Query:  336 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQ-EDFKASEIEVGVVSKENPEFRVLSIEEIDE 797
            TAD R L +  R E+    F Y   +PV  L   +ADK+QV TQ ++ RP GV  +V  +DE  G  L+   P+G++F ++A + G + Q A  +LE+K ++    + ++ ++ AI  ++  LQ E  K+S   V V+  + P F  L  E I +
Sbjct:   78 TADGRVLSRYMRSESINHSFTYESPLPVGRLVVHLADKAQVCTQRSWKRPYGVGLLVGGLDES-GAHLYYNCPSGNYFEYQAFAIGSRSQAAKTYLERKFESFQESSKEDLIKDAIMAIRETLQGETLKSSLCTVSVLGVDEP-FHFLDQESIQK 230          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA7_YEAST (Proteasome component PRE6 OS=Saccharomyces cerevisiae GN=PRE6 PE=1 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.039e-14
Identity = 51/162 (31.48%), Postives = 87/162 (53.70%), Query Frame = -3
Query:  315 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSID-EECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKM-KNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISE 794
            AD+R L+++AR EA   R      + V+ L +++A   Q YTQ   +RP GV  ++   D  +  P+L++ +P+G +    A + G   +    FLEK   + +P  T +E V+  + +L  V+Q    A  IE+ VV K + +   LS EEI++++T I +
Sbjct:   80 ADSRILIEKARVEAQSHRLTLEDPVTVEYLTRYVAGVQQRYTQSGGVRPFGVSTLIAGFDPRDDEPKLYQTEPSGIYSSWSAQTIGRNSKTVREFLEKNYDRKEPPATVEECVKLTVRSLLEVVQTG--AKNIEITVV-KPDSDIVALSSEEINQYVTQIEQ 238          
The following BLAST results are available for this feature:
BLAST of CN186095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PSA1_BOVIN5.365e-1529.88Proteasome subunit alpha type-1 OS=Bos taurus GN=P... [more]
PSA7_CAEEL7.006e-1529.28Proteasome subunit alpha type-7 OS=Caenorhabditis ... [more]
PSA1_RAT7.006e-1529.88Proteasome subunit alpha type-1 OS=Rattus norvegic... [more]
PSA2_XENLA9.151e-1532.91Proteasome subunit alpha type-2 OS=Xenopus laevis ... [more]
PSA1_PONAB9.151e-1529.88Proteasome subunit alpha type-1 OS=Pongo abelii GN... [more]
PSA7_SOLLC1.195e-1435.95Proteasome subunit alpha type-7 OS=Solanum lycoper... [more]
PSA7A_ARATH1.195e-1434.64Proteasome subunit alpha type-7-A OS=Arabidopsis t... [more]
PSA7_CHICK1.561e-1430.00Proteasome subunit alpha type-7 OS=Gallus gallus G... [more]
PSA1B_ARATH1.561e-1433.55Proteasome subunit alpha type-1-B OS=Arabidopsis t... [more]
PSA7_YEAST2.039e-1431.48Proteasome component PRE6 OS=Saccharomyces cerevis... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186095 ID=CN186095; Name=CN186095; organism=Citrus sinensis; type=EST; length=799bp
TTTTTTTTTTTTTTTTTCTAAAATTGCCATTCATCATAATAATCACTATG
GCCATGAAAGGCACTTGTCAATAGTCGTTATCAAGCCAATGTAGTAGTAA
AAGTCAACAGCTACCACTAGCACAAAGCACTTCCCCTGGTTGGCACAGCA
TAGTCACATAACTTGTTTTTCAACGTTTTGTTTTCTGCTTTGGAGGGCAA
TGGCTGTGTATTACCGAATGCACTTAAAATTATAAATTCAAGATACAGGG
AAAAGCATTTTTGTTTTTTGGTTTCAGCATTTATGATGGGGCGTGAAACC
ACCTCCTAATCTCGTTCACTTATAGCAGTCAAGTGCTCATCGATCTCCTC
GATGGACAAAACTCTGAATTCTGGATTCTCCTTGCTCACCACGCCAACCT
CAATCTCACTCGCCTTAAAATCCTCTTGCAGGACTGATTGCAGGGTGGAA
ATTGCAGTCTGCACAGTTTCTTGAAAGGTAAACGCAGGATCATTCTTCAT
CTTCTTCTCCAAGAAATTAATTGCCTCTTGCTCCTTCAATCCAGCACTTG
TTGCCTTGTGGCCAAAGAAATGGCCAGCAGGGTCACACTTAAAGAGGCGA
GGTCCACATTCTTCGTCAATACTCAAAACCATAGCAACTACACCAAGTGG
TCTCATATAAGCATGTTGAGTATATACTTGTGATTTGTCTGCAATCCATT
TGGCTAACACATCCACAGGCATTTCATATCCATATTTGAAGCGAAACTCA
GCGGCTTCATATCTTGCCTGCTGAACCAATGTCCTTGCATCAGCTGTCA
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