CN186095

Overview
NameCN186095
Unique NameCN186095
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length799
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA4_SPIOL (Proteasome subunit alpha type-4 OS=Spinacia oleracea GN=PAC1 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.039e-14
Identity = 50/160 (31.25%), Postives = 82/160 (51.25%), Query Frame = -3
Query:  327 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASE----IEVGVVSKENPEFRVLSIEEIDEHLT 794
            +DA  L+  AR +A  + F Y   MPV+ L + + D  Q YTQ   +RP GV  +    D+  G +L+  DP+G++ G KAT+ G   Q A + L++  K+D   T ++ V+ A+  L   +      SE     EV ++     +++V S E ++  LT
Sbjct:   81 SDANILINTARVQAQRYTFSYQEPMPVEQLVQSLCDTKQGYTQFGGLRPFGVSFLFAGWDKNYGFQLYMSDPSGNYGGWKATAIGANNQAAQSMLKQDYKDD--VTREDAVKLALKALSKTMDSTSLTSEKLELAEVYLLPSGKVKYQVHSPESLNRLLT 238          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA2_HUMAN (Proteasome subunit alpha type-2 OS=Homo sapiens GN=PSMA2 PE=1 SV=2)

HSP 1 Score: 79.7221 bits (195), Expect = 2.039e-14
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  318 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 791
            D R LV +AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   +E   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+   +       IEVG+ ++    FR L+  E+ ++L AI+
Sbjct:   82 DYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVKDYLAAIA 234          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA2_BOVIN (Proteasome subunit alpha type-2 OS=Bos taurus GN=PSMA2 PE=1 SV=3)

HSP 1 Score: 79.7221 bits (195), Expect = 2.039e-14
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  318 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 791
            D R LV +AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   +E   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+   +       IEVG+ ++    FR L+  E+ ++L AI+
Sbjct:   82 DYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVKDYLAAIA 234          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_METS3 (Proteasome subunit alpha OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=psmA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.662e-14
Identity = 50/166 (30.12%), Postives = 86/166 (51.81%), Query Frame = -3
Query:  303 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSI-DEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL-TAISERD*E 794
            ADAR LV++AR EA   +  Y   + VD L+K + D  Q+YTQ+  +RP G   ++  + D  C  +LF+ DP+G    +KAT+ G     A++  E + K+D      E +  A++ +    + +  A+ +E+ V+      +  LS EE+   +   +SE + E
Sbjct:   84 ADARALVERARVEAQINKITYSEPIRVDSLSKKLCDMLQMYTQNGGVRPFGSALIIGGVYDGIC--KLFETDPSGALIEYKATAIGSGRSAAMDIFEDQYKDD--MNLNEAINLALTAINEATEHETTANNVEIAVIKCGEEVYTKLSQEEVQTFIDEVVSEEESE 245          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA7B_ARATH (Proteasome subunit alpha type-7-B OS=Arabidopsis thaliana GN=PAD2 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.662e-14
Identity = 52/153 (33.99%), Postives = 75/153 (49.02%), Query Frame = -3
Query:  339 ADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECG-PRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEID 794
            ADAR L+ +AR E    R      + V+ + ++IA   Q YTQ   +RP G+  +++  D     P L++ DP+G F   KA + G        FLEK  K       QET++ AI  L  V++   K   IEV V+++E    R L   EID
Sbjct:   79 ADARVLINKARIECQSHRLTLEDPVTVEYITRYIAGLQQKYTQSGGVRPFGLSTLIVGFDPYSRLPSLYQTDPSGTFSAWKANATGRNSNSIREFLEKNYKESSG---QETIKLAIRALLEVVESGGK--NIEVAVMTREETGLRQLEEAEID 226          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA2_RAT (Proteasome subunit alpha type-2 OS=Rattus norvegicus GN=Psma2 PE=1 SV=3)

HSP 1 Score: 79.337 bits (194), Expect = 2.662e-14
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  318 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 791
            D R LV +AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   +E   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+   +       IEVG+ ++    FR L+  E+ ++L AI+
Sbjct:   82 DYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVRDYLAAIA 234          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA2_MOUSE (Proteasome subunit alpha type-2 OS=Mus musculus GN=Psma2 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.662e-14
Identity = 52/158 (32.91%), Postives = 80/158 (50.63%), Query Frame = -3
Query:  318 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAIS 791
            D R LV +AR  A ++   Y   +P   L + +A   Q YTQ   +RP GV  ++   +E   P LF+ DP+G +F  KAT+ G        FLEK+   D     ++ + TAI TL+   +       IEVG+ ++    FR L+  E+ ++L AI+
Sbjct:   82 DYRVLVHRARKLAQQYYLVYQEPIPTAQLVQRVASVMQEYTQSGGVRPFGVSLLICGWNEG-RPYLFQSDPSGAYFAWKATAMGKNYVNGKTFLEKRYNED--LELEDAIHTAILTLKESFEGQMTEDNIEVGICNEAG--FRRLTPTEVRDYLAAIA 234          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA1_DICDI (Proteasome subunit alpha type-1 OS=Dictyostelium discoideum GN=psmA1 PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.662e-14
Identity = 44/166 (26.51%), Postives = 84/166 (50.60%), Query Frame = -3
Query:  309 TADARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVL---QEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAISERD 797
            TADAR L    R E + + + Y  +M V+ L   +ADK QV+TQ    RP GV  +V   D + G  +++  P+G+F+ +K+ S G + Q A  +LEK  ++    T ++ +   +  L+  +    +   +  + +G+V +  P F+++   +   +L  +   +
Sbjct:   78 TADARMLCNYMRNECSNYNYVYESQMRVERLVTKVADKHQVHTQRYGRRPYGVGLLVAGYD-QLGAHIYQTCPSGNFYDYKSISIGSRSQSAKTYLEKHFESFEECTLEQLITHGLRALRETIPNTDDTLNSKNVSIGIVGEGQP-FKIIEEADAQPYLNLLENEE 241          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSA2_DROME (Proteasome subunit alpha type-2 OS=Drosophila melanogaster GN=Pros25 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.541e-14
Identity = 52/157 (33.12%), Postives = 77/157 (49.04%), Query Frame = -3
Query:  321 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHLTAI 791
            D R LV+QAR  A  +   Y   +PV  L + +A   Q YTQ   +RP GV  ++   D +  P L++ DP+G +F  KAT+ G        FLEK+   D      + V TAI TL+   +    A  IE+G+  +    F+ L    I ++L +I
Sbjct:   82 DYRLLVKQARKIAQTYYLTYKEPIPVSQLVQRVATLMQEYTQSGGVRPFGVSLLICGWDND-RPYLYQSDPSGAYFAWKATAMGKNAVNGKTFLEKRYSED--LELDDAVHTAILTLKEGFEGKMTADNIEIGICDQNG--FQRLDPASIKDYLASI 233          
BLAST of CN186095 vs. ExPASy Swiss-Prot
Match: PSMA_METB6 (Proteasome subunit alpha OS=Methanoregula boonei (strain 6A8) GN=psmA PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 5.931e-14
Identity = 44/154 (28.57%), Postives = 76/154 (49.35%), Query Frame = -3
Query:  330 DARTLVQQARYEAAEFRFKYGYEMPVDVLAKWIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKNDPAFTFQETVQTAISTLQSVLQEDFKASEIEVGVVSKENPEFRVLSIEEIDEHL 791
            DAR LV +AR E    R  Y   + V+ LAK + D  Q  TQ+  +RP G   ++  + +    RLF+ DP+G    +KAT  G+    A+   E++   D A   ++ +   +  L S  +  F    +E+G+V     +F+ ++ EE+  ++
Sbjct:   85 DARALVDRARIECQINRVSYDERIEVEALAKKLCDHMQTLTQYGGIRPYGTALLIAGVSDG-ESRLFETDPSGTLLEYKATGIGIGRPAAMKVFEEEYTADLA--LKDAILLGLKALHSATEGKFDVDTVEMGIVESSTAQFKKMTKEEVASYV 235          
The following BLAST results are available for this feature:
BLAST of CN186095 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 146
Match NameE-valueIdentityDescription
PSA4_SPIOL2.039e-1431.25Proteasome subunit alpha type-4 OS=Spinacia olerac... [more]
PSA2_HUMAN2.039e-1432.91Proteasome subunit alpha type-2 OS=Homo sapiens GN... [more]
PSA2_BOVIN2.039e-1432.91Proteasome subunit alpha type-2 OS=Bos taurus GN=P... [more]
PSMA_METS32.662e-1430.12Proteasome subunit alpha OS=Methanobrevibacter smi... [more]
PSA7B_ARATH2.662e-1433.99Proteasome subunit alpha type-7-B OS=Arabidopsis t... [more]
PSA2_RAT2.662e-1432.91Proteasome subunit alpha type-2 OS=Rattus norvegic... [more]
PSA2_MOUSE2.662e-1432.91Proteasome subunit alpha type-2 OS=Mus musculus GN... [more]
PSA1_DICDI2.662e-1426.51Proteasome subunit alpha type-1 OS=Dictyostelium d... [more]
PSA2_DROME4.541e-1433.12Proteasome subunit alpha type-2 OS=Drosophila mela... [more]
PSMA_METB65.931e-1428.57Proteasome subunit alpha OS=Methanoregula boonei (... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F19_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186095 ID=CN186095; Name=CN186095; organism=Citrus sinensis; type=EST; length=799bp
TTTTTTTTTTTTTTTTTCTAAAATTGCCATTCATCATAATAATCACTATG
GCCATGAAAGGCACTTGTCAATAGTCGTTATCAAGCCAATGTAGTAGTAA
AAGTCAACAGCTACCACTAGCACAAAGCACTTCCCCTGGTTGGCACAGCA
TAGTCACATAACTTGTTTTTCAACGTTTTGTTTTCTGCTTTGGAGGGCAA
TGGCTGTGTATTACCGAATGCACTTAAAATTATAAATTCAAGATACAGGG
AAAAGCATTTTTGTTTTTTGGTTTCAGCATTTATGATGGGGCGTGAAACC
ACCTCCTAATCTCGTTCACTTATAGCAGTCAAGTGCTCATCGATCTCCTC
GATGGACAAAACTCTGAATTCTGGATTCTCCTTGCTCACCACGCCAACCT
CAATCTCACTCGCCTTAAAATCCTCTTGCAGGACTGATTGCAGGGTGGAA
ATTGCAGTCTGCACAGTTTCTTGAAAGGTAAACGCAGGATCATTCTTCAT
CTTCTTCTCCAAGAAATTAATTGCCTCTTGCTCCTTCAATCCAGCACTTG
TTGCCTTGTGGCCAAAGAAATGGCCAGCAGGGTCACACTTAAAGAGGCGA
GGTCCACATTCTTCGTCAATACTCAAAACCATAGCAACTACACCAAGTGG
TCTCATATAAGCATGTTGAGTATATACTTGTGATTTGTCTGCAATCCATT
TGGCTAACACATCCACAGGCATTTCATATCCATATTTGAAGCGAAACTCA
GCGGCTTCATATCTTGCCTGCTGAACCAATGTCCTTGCATCAGCTGTCA
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