CN186088

Overview
NameCN186088
Unique NameCN186088
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length773
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2799 contig Csv1_Contig2799:17..789. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186088 vs. ExPASy Swiss-Prot
Match: IF5A_STAMF (Translation initiation factor 5A OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.964e-12
Identity = 41/114 (35.96%), Postives = 61/114 (53.51%), Query Frame = -1
Query:  315 SKTYPQQAGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 656
            SKTY    G ++   +I+I   PC++VE+S +KTGKHG AK H V I +F+G K   + P     +VP + +   Q+I    D    +  E   T  ++  P+DE L  +LK G
Sbjct:    2 SKTYAT-LGELKPGNFIIIDGEPCRIVEMSKAKTGKHGSAKAHVVAIGLFTGNKKTLVAPVDQRVEVPVIEKRVGQIIADMGDLLQVMDMETFET-FEVEKPSDEKLREKLKPG 113          
BLAST of CN186088 vs. ExPASy Swiss-Prot
Match: IF5A_METS5 (Translation initiation factor 5A OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.997e-11
Identity = 41/130 (31.54%), Postives = 69/130 (53.08%), Query Frame = -1
Query:  243 GTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 632
            G +++  YIVI   PC+VVEV+ +KTGKHG AK + + + IF+G K   + P     +VP + +   Q+I    D    +  E   T  ++ +PT+E + +++K      KD  +     MG ++I  +K
Sbjct:    9 GEMKEGSYIVIDGEPCRVVEVTKAKTGKHGSAKANIIAVSIFTGAKKTLMAPVDSTVEVPIIEKRMGQVISNVGDKVQIMDLETYET-FEIDMPTEEDVASKIK------KDAEVEYWEVMGRKKIVRVK 131          
BLAST of CN186088 vs. ExPASy Swiss-Prot
Match: IF5A_KORCO (Translation initiation factor 5A OS=Korarchaeum cryptofilum (strain OPF8) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 2.608e-11
Identity = 42/127 (33.07%), Postives = 65/127 (51.18%), Query Frame = -1
Query:  255 AGTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQI 635
            AG +RK  Y+++   PC+V+EVS SK GKHG AK       IF G +   I P+    ++P V++   Q+I++     V L+        +L LP D  L ++LK G      + +    SMG+ +I
Sbjct:    8 AGDLRKGSYVILDDEPCEVLEVSKSKPGKHGSAKVRVEARGIFDGARRSKIFPADALVEIPIVDKKTAQVINV-YGNVVQLMDLETYETFELPLPEDPELASRLKSG------IEVEYWESMGKRKI 127          
BLAST of CN186088 vs. ExPASy Swiss-Prot
Match: IF5A_SULAC (Translation initiation factor 5A OS=Sulfolobus acidocaldarius GN=eif5a PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 4.449e-11
Identity = 40/130 (30.77%), Postives = 70/130 (53.85%), Query Frame = -1
Query:  243 GTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDGFAEGKDLVLTVMSSMGEEQICALK 632
            G ++   Y++I   PC+VVE++ +KTGKHG AK + V I +F+G+K   + P     +VP + +   Q++    D    +  E+  T  DL  PT+  ++++++ G AE     +   S MG  +I  +K
Sbjct:    9 GDLKVGSYVMIDGEPCRVVEITKAKTGKHGSAKANVVAIGLFTGQKRSLMAPVDQQVEVPIIEKHVGQILADKGDNLTIMDLESYET-FDLEKPTENEIVSKIRPG-AE-----IEYWSVMGRRKIVRVK 131          
BLAST of CN186088 vs. ExPASy Swiss-Prot
Match: IF5A_HYPBU (Translation initiation factor 5A OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=eIF5A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 9.911e-11
Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = -1
Query:  315 GTIRKNGYIVIKSRPCKVVEVSTSKTGKHGHAKCHFVGIDIFSGKKLEDIVPSSHNCDVPHVNRTDYQLIDISEDGFVSLLTENGNTKDDLRLPTDETLLTQLKDG 632
            G ++   YIVI   PC++VE+S +KTGKHG AK H V + +FSG K     P     +VP +++   Q+I    D  V ++        ++  P DE L ++L+ G
Sbjct:    9 GELKVGSYIVIDGEPCRIVEMSKAKTGKHGSAKAHVVAVCLFSGNKKTLTAPVDARVEVPIIDKRIGQVIADMGD-MVQIMDMETYETFEVEKPKDEDLKSKLQPG 113          
The following BLAST results are available for this feature:
BLAST of CN186088 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 55
Match NameE-valueIdentityDescription
IF5A_STAMF8.964e-1235.96Translation initiation factor 5A OS=Staphylothermu... [more]
IF5A_METS51.997e-1131.54Translation initiation factor 5A OS=Metallosphaera... [more]
IF5A_KORCO2.608e-1133.07Translation initiation factor 5A OS=Korarchaeum cr... [more]
IF5A_SULAC4.449e-1130.77Translation initiation factor 5A OS=Sulfolobus aci... [more]
IF5A_HYPBU9.911e-1134.91Translation initiation factor 5A OS=Hyperthermus b... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F14_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F14, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186088 ID=CN186088; Name=CN186088; organism=Citrus sinensis; type=EST; length=773bp
TTTTTTTTTTTTTTTTTCTTTCAACATTATAATTCATTAGAGAAATTGAA
CCCATTAAATTTTTTAGCCGCCAATCAAAAGAACTACATATTCCCCTTAA
GTTGCAATTCTCACCACAAAACAAAGACGCTACAAATATTAAAGGCAAAC
TCTAGATGATTAAAATATTTTTCCAAAAAACAGATGCAACCAGACACAGA
AGATAATCACATATCGCGCAACTACGACTTTGGGCCAATATCCTTGAGGG
CACAGATCTGCTCCTCGCCCATTGAAGACATGACAGTCAAAACCAAGTCC
TTCCCCTCAGCAAAACCGTCCTTGAGCTGGGTCAGCAGAGTCTCATCGGT
TGGGAGCCTCAGATCATCCTTGGTGTTCCCATTTTCAGTCAGCAAACTCA
CAAATCCATCCTCAGAAATATCAATCAACTGATAGTCGGTACGGTTGACA
TGGGGAACATCACAGTTATGAGAAGAGGGGACAATATCTTCCAGCTTCTT
TCCACTGAAGATATCAATTCCAACAAAGTGGCACTTAGCATGACCGTGCT
TTCCAGTCTTGGAGGTGGAGACTTCCACAACCTTGCAGGGACGGCTTTTG
ATGACGATGTAGCCGTTCTTACGGATGGTACCAGCTTGCTGTGGGTAAGT
CTTGGAGGCTCCGGCATCGGCCTTTGACTCGAAGTGATGCTCCTCGTCCG
ACATCGCTTTAAGCACTGACTGATTCCGACTCGGCCGATTTACTGAGCGA
GATTTTGAGATAGCCTGGGGCCT
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