DC900163

Overview
NameDC900163
Unique NameDC900163
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length1400
Libraries
Library NameType
VSScdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: ERF76_ARATH (Ethylene-responsive transcription factor 11 OS=Arabidopsis thaliana GN=ERF11 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.245e-11
Identity = 35/72 (48.61%), Postives = 42/72 (58.33%), Query Frame = 2
Query:  404 VEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 619
            V+ A   T      +YRG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK NFP
Sbjct:    5 VKTAAVKTNEGNGVRYRGVRKRPWGRYAAEIRDPFKKSRVWLGTFDTPEEAARAYDKRAIEFRGAKAKTNFP 76          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: EF106_ARATH (Ethylene-responsive transcription factor ERF106 OS=Arabidopsis thaliana GN=ERF106 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.245e-11
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 2
Query:  362 SAGRKSHGSTAVKHVEQAKKSTERKRKN----QYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 619
            S+  + + S++    +Q+ K  ER  +      YRG+R+RPWGK+AAEIRDP  KG R+WLGTF +              +RG+KA +NFP
Sbjct:   77 SSSPELNSSSSTYETDQSVKKAERFEEEVDARHYRGVRRRPWGKFAAEIRDPAKKGSRIWLGTFESDVDAARAYDCAAFKLRGRKAVLNFP 167          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: EF104_ARATH (Ethylene-responsive transcription factor ERF104 OS=Arabidopsis thaliana GN=ERF104 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.245e-11
Identity = 32/68 (47.06%), Postives = 45/68 (66.18%), Query Frame = 2
Query:  419 KSTERKRKNQYRGIRQRPWGKWAAEIRDPT-KGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 619
            K+ + + +  YRG+R+RPWGK+AAEIRDP  KG R+WLGT++T              +RG+KA +NFP
Sbjct:   78 KTEKEEEERHYRGVRRRPWGKYAAEIRDPNKKGCRIWLGTYDTAVEAGRAYDQAAFQLRGRKAILNFP 145          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: ERF78_ARATH (Ethylene-responsive transcription factor 4 OS=Arabidopsis thaliana GN=ERF4 PE=1 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.625e-11
Identity = 32/58 (55.17%), Postives = 38/58 (65.52%), Query Frame = 2
Query:  446 QYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 619
            +YRG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK NFP
Sbjct:   24 RYRGVRKRPWGRYAAEIRDPGKKTRVWLGTFDTAEEAARAYDTAARDFRGAKAKTNFP 81          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: ERF83_ARATH (Ethylene-responsive transcription factor 7 OS=Arabidopsis thaliana GN=ERF7 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.772e-11
Identity = 37/83 (44.58%), Postives = 46/83 (55.42%), Query Frame = 2
Query:  371 RKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 619
            RK  GS+ V            K   +YRG+R+RPWG++AAEIRDP K  RVWLGTF++              +RG KAK NFP
Sbjct:    2 RKGRGSSVVGPALPVTAGGSVKEP-RYRGVRKRPWGRFAAEIRDPLKKSRVWLGTFDSAVDAARAYDTAARNLRGPKAKTNFP 83          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 2.772e-11
Identity = 33/65 (50.77%), Postives = 40/65 (61.54%), Query Frame = 2
Query:  425 TERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 619
            T   ++  YRG+R+RPWG++AAEIRDP K  RVWLGTF+T               RG KAK NFP
Sbjct:   19 TNGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNFP 83          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: ERF42_ARATH (Ethylene-responsive transcription factor ERF042 OS=Arabidopsis thaliana GN=ERF042 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.621e-11
Identity = 35/82 (42.68%), Postives = 42/82 (51.22%), Query Frame = 2
Query:  377 SHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFPD 622
            SHGS         KK  + K K  YRG R R WGKW +EIR+P K  R+WLGTF T              I+G  A +NFP+
Sbjct:    4 SHGSDT--ECSSKKKKEKTKEKGVYRGARMRSWGKWVSEIREPRKKSRIWLGTFPTAEMAARAHDVAALSIKGSSAILNFPE 83          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: ERF3_TOBAC (Ethylene-responsive transcription factor 3 OS=Nicotiana tabacum GN=ERF3 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.729e-11
Identity = 33/83 (39.76%), Postives = 47/83 (56.63%), Query Frame = 2
Query:  371 RKSHGSTAVKHVEQAKKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 619
            R+   + A   V      +   ++ ++RG+R+RPWG++AAEIRDP K  RVWLGTF++              +RG KAK NFP
Sbjct:    2 RRGRAAAAPAPVTGEPNGSGGSKEIRFRGVRKRPWGRFAAEIRDPWKKTRVWLGTFDSAEDAARAYDAAARALRGPKAKTNFP 84          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: EF101_ARATH (Ethylene-responsive transcription factor 2 OS=Arabidopsis thaliana GN=ERF2 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.729e-11
Identity = 33/62 (53.23%), Postives = 39/62 (62.90%), Query Frame = 2
Query:  437 RKNQYRGIRQRPWGKWAAEIRDPTK-GVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNFP 619
            +   YRG+RQRPWGK+AAEIRDP K G RVWLGTF T              +RG +A +NFP
Sbjct:  113 KAKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDIAAFRMRGSRALLNFP 174          
BLAST of DC900163 vs. ExPASy Swiss-Prot
Match: CRF4_ARATH (Ethylene-responsive transcription factor CRF4 OS=Arabidopsis thaliana GN=CRF4 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 4.729e-11
Identity = 32/67 (47.76%), Postives = 39/67 (58.21%), Query Frame = 2
Query:  416 KKSTERKRKNQYRGIRQRPWGKWAAEIRDPTKGVRVWLGTFNTXXXXXXXXXXXXXXIRGKKAKVNF 616
            K S   + + +YRG+RQRPWGKWAAEIRDP +  R+WLGTF T              +RG  A  NF
Sbjct:  106 KPSVSGQNQKKYRGVRQRPWGKWAAEIRDPEQRRRIWLGTFATAEEAAIVYDNAAIKLRGPDALTNF 172          
The following BLAST results are available for this feature:
BLAST of DC900163 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ERF76_ARATH1.245e-1148.61Ethylene-responsive transcription factor 11 OS=Ara... [more]
EF106_ARATH1.245e-1140.66Ethylene-responsive transcription factor ERF106 OS... [more]
EF104_ARATH1.245e-1147.06Ethylene-responsive transcription factor ERF104 OS... [more]
ERF78_ARATH1.625e-1155.17Ethylene-responsive transcription factor 4 OS=Arab... [more]
ERF83_ARATH2.772e-1144.58Ethylene-responsive transcription factor 7 OS=Arab... [more]
ERF4_NICSY2.772e-1150.77Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF42_ARATH3.621e-1142.68Ethylene-responsive transcription factor ERF042 OS... [more]
ERF3_TOBAC4.729e-1139.76Ethylene-responsive transcription factor 3 OS=Nico... [more]
EF101_ARATH4.729e-1153.23Ethylene-responsive transcription factor 2 OS=Arab... [more]
CRF4_ARATH4.729e-1147.76Ethylene-responsive transcription factor CRF4 OS=A... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionDC900163 VSS Citrus sinensis cDNA clone VS27V82 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DC900163 ID=DC900163; Name=DC900163; organism=Citrus sinensis; type=EST; length=1400bp
AACTCTCTCAAGCCAACAAAAGCAAATTTTTACATTTAACCCATTCTCTT
CTAAAAATCTTTTCTCTTTAGTCCCTGAACAAACCAGAAGAAACGATAAA
CCCTTAACCATGTGTGGAGGTGCTATCATTTCGGGCTACATCCCGCCCAC
CGTGCCGGGCCGTCCAAAGAAGCTGACGGCGGAGTATCTCTGGCCGGAGC
TGAAGAGGTCATCCAACAAGAAGTACTCAAAGCCGATCGTCGACGATGAT
TTCGAGGCTGATTTCCAAGGATTCAAGGACGATGAAGAAGAGTCTGACAT
TGATGGTGACGTGGACGTTGATGCCGACTTGATGATGGCTGATATTAAGC
CTTTTACTTTCTCAGCTGGTCGCAAGTCTCATGGATCTACAGCCGTGAAG
CACGTTGAACAAGCTAAAAAATCCACAGAAAGAAAGAGGAAGAATCAATA
TAGGGGAATTAGGCAGCGTCCATGGGGAAAATGGGCTGCTGAGATCCGTG
ACCCCACAAAAGGGGTTCGTGTCTGGCTAGGAACTTTCAATACCGCTGAA
GAAGCCGCTAGGGCTTATGATGCCGAGGCACGGAGGATCCGTGGGAAGAA
AGCTAAGGTTAACTTTCCAGATGAAACTCCTGCTGCTGCTCCAAGAGCTC
AGTGAAGGCAAACTCTCAGAAATCAGTTCCCAAGCTTGCCTAAGCCCGTG
CAGCCAAGTTTGAACCAGAACTTCGATTACTTGANCAACTCCGATCAGGA
TTACTACAACAATGTGAGTATTCTGGAGGAGAAACCCCAAGTGAATCAGT
ATGGATATTTGGGCTCCTTCCCTAATGATGGAGAACTAGGATTCAAACCC
TTTGTGCCAACAGCTGATGATACTCCTTTGTACTTCAACTCTGACCAAGG
CAGTAACTCCTTTGATTGTTCTGACTTTGGCTGGGGAGAACAGGCACCAA
AGACTCCTGAAATCTCATCTGTTTTGGAAGCTACCCCTGAAGTTGATGAA
TCTCAGTTTGTGGATGCGGTTGCAAACCCGATGAAGAAGCTGAAATCTAA
CTCTGAGAATGCTGTGCCTGTTCAGGATAACAATGGAAAGTCTCTGTCTG
ATGAGCTTTTGGCTTTTGACAATCAGGTGAAGTTCTTGCCAATGCCGTAT
CCTGAAGGAAGCTGGGAGGCCTCCCTCGATGCCTTCCTCAATGGTGACAA
CACTCAGGATGGTGGAAACTTGATGAACCTTTGGAGCTTTGATGACTTCC
CTTCTACCCTAGGGGGAGTGTATTGAGCAAACTTTAATGTGCTTGCTAGT
TTTGTAAATAAGGCTATATGTTAGTGAGTTCTCACTTTCTGATTTTTTGT
CAGATTTTAGCTCTCTTGGATCTGTTTTAATGTTTATTCACTCTGTTTCT
back to top