CN186084
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1) HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23 Identity = 75/235 (31.91%), Postives = 117/235 (49.79%), Query Frame = 1 Query: 43 LVHSERMAAVGIETKQP-------ESAAPEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717 + E+MA V E +Q + + E V + + + ++ L+ HELQ + N +++ + +++ + +L + +E G+ + + GK V +K Y + P V + DSY++ LP++ D V M+V++ P Y IGGLD+QI+E+ E I LP+ H E FE+LGI PKGVL+YGPPGTGKTLLARA A T Sbjct: 11 VTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 244
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3) HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23 Identity = 74/235 (31.49%), Postives = 117/235 (49.79%), Query Frame = 1 Query: 43 LVHSERMAAVGIETKQP-------ESAAPEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717 + E+MA V E +Q + + E + + + + ++ L+ HELQ + N +++ + +++ + +L + +E G+ + + GK V +K Y + P V + DSY++ LP++ D V M+V++ P Y IGGLD+QI+E+ E I LP+ H E FE+LGI PKGVL+YGPPGTGKTLLARA A T Sbjct: 11 VTRQEKMATVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 244
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1) HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23 Identity = 75/235 (31.91%), Postives = 116/235 (49.36%), Query Frame = 1 Query: 43 LVHSERMAAVGIETKQP-------ESAAPEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717 + E+MA V E +Q + + E V + + + ++ L+ HELQ + N +++ + +++ + +L + +E G+ + + GK V +K Y + P V + DSY++ LP+ D V M+V++ P Y IGGLD+QI+E+ E I LP+ H E FE+LGI PKGVL+YGPPGTGKTLLARA A T Sbjct: 14 VTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 247
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23 Identity = 67/191 (35.08%), Postives = 101/191 (52.88%), Query Frame = 1 Query: 154 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717 ++ L+ HELQ + N +++ + +++ + +L + +E G+ + + GK V +K Y + P V + DSY++ LP++ D V M+V++ P Y IGGLD+QI+E+ E I LP+ H E FE+LGI PKGVL+YGPPGTGKTLLARA A T Sbjct: 20 MKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 209
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1) HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23 Identity = 67/191 (35.08%), Postives = 101/191 (52.88%), Query Frame = 1 Query: 154 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717 ++ L+ HELQ + N +++ + +++ + +L + +E G+ + + GK V +K Y + P V + DSY++ LP++ D V M+V++ P Y IGGLD+QI+E+ E I LP+ H E FE+LGI PKGVL+YGPPGTGKTLLARA A T Sbjct: 39 MKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 228
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1) HSP 1 Score: 107.842 bits (268), Expect = 5.850e-23 Identity = 66/187 (35.29%), Postives = 99/187 (52.94%), Query Frame = 1 Query: 184 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVM-----GKNK----VLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717 E + +V + H LE + + R++ ++LQ+ + V VV+++ G+ + V+VK + P V + DSY++ LP + D V M++++ P Y IGGLD+QI+E+ E + LP+ H E FES+GI PKGVL+YGPPGTGKTLLARA A T Sbjct: 42 ENETKVLRSEHISKHLEM--DSIQKRIKENNDKLQVNTQLPHLVANVVEIIDMVLDGETQPSKCVVVKASTRQTIFLAYPGIVDVDKLRPGDLVGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGKTLLARACAAQT 226
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23 Identity = 55/148 (37.16%), Postives = 88/148 (59.46%), Query Frame = 1 Query: 274 KEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717 +EE++ ++ +G++++++ N +V+ V PS VAL+ S L LP + D ++L+ ++ P +Y IGG D Q +E++E +ELP+ H L++ +GI P+GVLLYGPPGTGKT+LA+AVAHHT Sbjct: 61 QEEVKRIRSVPLLIGQLLEMVDSNTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 208
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1) HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23 Identity = 70/204 (34.31%), Postives = 103/204 (50.49%), Query Frame = 1 Query: 112 EVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVN--LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717 E A S GE L + + I L + R +N ++ + N+ + E ++L ++ VG VV+V+ ++ +V + P VAL D+ ++ LP D V ++K + PD TY+ IGGL++QI+E+ E I L + HPE FE L I PKGVL+YGPPGTGKTL+ARA A T Sbjct: 4 EELEAMDQSNPGEFLERVR-EKIRMLNSETRILQSRVNTIKHDISTKNASIAENMERIRLNKQLPYLVGNVVEVLDEHSGVVNASTRMSSYLPITGLIPNSELRPGDLVALHKDTNIVFEKLPPDYDMKVGGMVLKSDAKPDETYEDIGGLERQIEELNEAIVLSLTHPERFEKLNIKPPKGVLMYGPPGTGKTLMARACASKT 206
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3) HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22 Identity = 69/203 (33.99%), Postives = 102/203 (50.25%), Query Frame = 1 Query: 187 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPE---------------GKYVVXXXXXXXXXXXX-----------PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717 L ++R L RL + N + +++ KE+++ ++ V VV+VM N++ K + E GK V P+ V + DSY++ LPS+ D V M+V++ P TY +GGLD+QI+E+ E I LP+K + F+ +GI PKG L+YGPPGTGKTLLARA A T Sbjct: 37 LDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22 Identity = 63/198 (31.82%), Postives = 100/198 (50.51%), Query Frame = 1 Query: 187 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNK---------------------VLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717 L+ ++R + R + + +++ +E+++L ++ VG +V+++ N V++K + P V + DSY++ LPS+ D V M+V++ P Y+ IGGL++QI+E+ E I LP+ H E FE LG+ PKGVLLYGPPGTGKTL+ARA A T Sbjct: 32 LENEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 229 The following BLAST results are available for this feature:
BLAST of CN186084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 183
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186084 ID=CN186084; Name=CN186084; organism=Citrus sinensis; type=EST; length=718bpback to top |