CN186084

Overview
NameCN186084
Unique NameCN186084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:46..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_RAT (26S protease regulatory subunit 6A OS=Rattus norvegicus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 75/235 (31.91%), Postives = 117/235 (49.79%), Query Frame = 1
Query:   43 LVHSERMAAVGIETKQP-------ESAAPEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +   E+MA V  E +Q        + +  E V   +    + + ++   L+  HELQ    +   N  +++  +     +++ + +L  +    +E G+ +    +  GK  V +K      Y +            P   V +  DSY++   LP++ D  V  M+V++ P   Y  IGGLD+QI+E+ E I LP+ H E FE+LGI  PKGVL+YGPPGTGKTLLARA A  T
Sbjct:   11 VTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 244          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_HUMAN (26S protease regulatory subunit 6A OS=Homo sapiens GN=PSMC3 PE=1 SV=3)

HSP 1 Score: 109.383 bits (272), Expect = 2.011e-23
Identity = 74/235 (31.49%), Postives = 117/235 (49.79%), Query Frame = 1
Query:   43 LVHSERMAAVGIETKQP-------ESAAPEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +   E+MA V  E +Q        + +  E +   +    + + ++   L+  HELQ    +   N  +++  +     +++ + +L  +    +E G+ +    +  GK  V +K      Y +            P   V +  DSY++   LP++ D  V  M+V++ P   Y  IGGLD+QI+E+ E I LP+ H E FE+LGI  PKGVL+YGPPGTGKTLLARA A  T
Sbjct:   11 VTRQEKMATVWDEAEQDGIGEEVLKMSTEEIIQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 244          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_MOUSE (26S protease regulatory subunit 6A OS=Mus musculus GN=Psmc3 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.626e-23
Identity = 75/235 (31.91%), Postives = 116/235 (49.36%), Query Frame = 1
Query:   43 LVHSERMAAVGIETKQP-------ESAAPEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +   E+MA V  E +Q        + +  E V   +    + + ++   L+  HELQ    +   N  +++  +     +++ + +L  +    +E G+ +    +  GK  V +K      Y +            P   V +  DSY++   LP+  D  V  M+V++ P   Y  IGGLD+QI+E+ E I LP+ H E FE+LGI  PKGVL+YGPPGTGKTLLARA A  T
Sbjct:   14 VTRQEKMATVWDEAEQDGIGEEVLKMSTEEIVQRTRLLDSEIKIMKSEVLRVTHELQAMKDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTDYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 247          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PR6AB_XENLA (26S protease regulatory subunit 6A-B OS=Xenopus laevis GN=psmc3-B PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 67/191 (35.08%), Postives = 101/191 (52.88%), Query Frame = 1
Query:  154 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            ++   L+  HELQ    +   N  +++  +     +++ + +L  +    +E G+ +    +  GK  V +K      Y +            P   V +  DSY++   LP++ D  V  M+V++ P   Y  IGGLD+QI+E+ E I LP+ H E FE+LGI  PKGVL+YGPPGTGKTLLARA A  T
Sbjct:   20 MKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 209          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PR6AA_XENLA (26S protease regulatory subunit 6A-A OS=Xenopus laevis GN=psmc3-A PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 3.429e-23
Identity = 67/191 (35.08%), Postives = 101/191 (52.88%), Query Frame = 1
Query:  154 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNE---LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            ++   L+  HELQ    +   N  +++  +     +++ + +L  +    +E G+ +    +  GK  V +K      Y +            P   V +  DSY++   LP++ D  V  M+V++ P   Y  IGGLD+QI+E+ E I LP+ H E FE+LGI  PKGVL+YGPPGTGKTLLARA A  T
Sbjct:   39 MKSEVLRVTHELQAMRDKIKENSEKIKVNKTLPYLVSNVIELLDVDPNDQEEDGANIDLDSQRKGKCAV-IKTSTRQTYFLPVIGLVDAEKLKPGDLVGVNKDSYLILETLPTEYDSRVKAMEVDERPTEQYSDIGGLDKQIQELVEAIVLPMNHKEKFENLGIQPPKGVLMYGPPGTGKTLLARACAAQT 228          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_DICDI (26S protease regulatory subunit 6A homolog OS=Dictyostelium discoideum GN=psmC3 PE=1 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 5.850e-23
Identity = 66/187 (35.29%), Postives = 99/187 (52.94%), Query Frame = 1
Query:  184 ELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVM-----GKNK----VLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            E + +V +  H    LE   + +  R++   ++LQ+  +    V  VV+++     G+ +    V+VK        +            P   V +  DSY++   LP + D  V  M++++ P   Y  IGGLD+QI+E+ E + LP+ H E FES+GI  PKGVL+YGPPGTGKTLLARA A  T
Sbjct:   42 ENETKVLRSEHISKHLEM--DSIQKRIKENNDKLQVNTQLPHLVANVVEIIDMVLDGETQPSKCVVVKASTRQTIFLAYPGIVDVDKLRPGDLVGINKDSYIILDTLPPEYDSRVKAMEIDEKPTEEYSDIGGLDKQIQELVEAVVLPMTHKERFESIGIKPPKGVLMYGPPGTGKTLLARACAAQT 226          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6B_DICDI (26S protease regulatory subunit 6B homolog OS=Dictyostelium discoideum GN=psmC4 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 55/148 (37.16%), Postives = 88/148 (59.46%), Query Frame = 1
Query:  274 KEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +EE++ ++     +G++++++  N  +V+        V            PS  VAL+  S  L   LP + D  ++L+  ++ P  +Y  IGG D Q +E++E +ELP+ H  L++ +GI  P+GVLLYGPPGTGKT+LA+AVAHHT
Sbjct:   61 QEEVKRIRSVPLLIGQLLEMVDSNTGIVQSTSGSTLCVRILSTIDRELLKPSASVALQRHSNALVDTLPPESDSSIHLLGADEKPSESYSDIGGGDIQKQEMREAVELPLTHHNLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT 208          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_ENCCU (26S protease regulatory subunit 6A OS=Encephalitozoon cuniculi GN=RPT5 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.978e-23
Identity = 70/204 (34.31%), Postives = 103/204 (50.49%), Query Frame = 1
Query:  112 EVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVN--LMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            E   A   S  GE L +   + I  L  + R     +N ++   +  N+ +    E ++L ++    VG VV+V+ ++  +V         +            P   VAL  D+ ++   LP   D  V   ++K +  PD TY+ IGGL++QI+E+ E I L + HPE FE L I  PKGVL+YGPPGTGKTL+ARA A  T
Sbjct:    4 EELEAMDQSNPGEFLERVR-EKIRMLNSETRILQSRVNTIKHDISTKNASIAENMERIRLNKQLPYLVGNVVEVLDEHSGVVNASTRMSSYLPITGLIPNSELRPGDLVALHKDTNIVFEKLPPDYDMKVGGMVLKSDAKPDETYEDIGGLERQIEELNEAIVLSLTHPERFEKLNIKPPKGVLMYGPPGTGKTLMARACASKT 206          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_YEAST (26S protease regulatory subunit 6A OS=Saccharomyces cerevisiae GN=RPT5 PE=1 SV=3)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 69/203 (33.99%), Postives = 102/203 (50.25%), Query Frame = 1
Query:  187 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPE---------------GKYVVXXXXXXXXXXXX-----------PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            L  ++R     L RL  + N +  +++  KE+++  ++    V  VV+VM  N++  K + E               GK  V                       P+  V +  DSY++   LPS+ D  V  M+V++ P  TY  +GGLD+QI+E+ E I LP+K  + F+ +GI  PKG L+YGPPGTGKTLLARA A  T
Sbjct:   37 LDNEIRIFRSELQRLSHENNVMLEKIKDNKEKIKNNRQLPYLVANVVEVMDMNEIEDKENSESTTQGGNVNLDNTAVGKAAVVKTSSRQTVFLPMVGLVDPDKLKPNDLVGVNKDSYLILDTLPSEFDSRVKAMEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT 239          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_BRACM (26S protease regulatory subunit 6A homolog OS=Brassica campestris GN=TBP1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.223e-22
Identity = 63/198 (31.82%), Postives = 100/198 (50.51%), Query Frame = 1
Query:  187 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNK---------------------VLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            L+ ++R    +  R   + +    +++  +E+++L ++    VG +V+++  N                      V++K        +            P   V +  DSY++   LPS+ D  V  M+V++ P   Y+ IGGL++QI+E+ E I LP+ H E FE LG+  PKGVLLYGPPGTGKTL+ARA A  T
Sbjct:   32 LENEIRILKEDAQRTNLECDSYKEKIKENQEKIKLNKQLPYLVGNIVEILEMNPEDDAEEDGANIDLDSQRKGKCVVLKTSTRQTIFLPVVGLVDPDSLKPGDLVGVNKDSYLILDTLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPMTHKERFEKLGVRPPKGVLLYGPPGTGKTLMARACAAQT 229          
The following BLAST results are available for this feature:
BLAST of CN186084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
PRS6A_RAT1.539e-2331.9126S protease regulatory subunit 6A OS=Rattus norve... [more]
PRS6A_HUMAN2.011e-2331.4926S protease regulatory subunit 6A OS=Homo sapiens... [more]
PRS6A_MOUSE2.626e-2331.9126S protease regulatory subunit 6A OS=Mus musculus... [more]
PR6AB_XENLA3.429e-2335.0826S protease regulatory subunit 6A-B OS=Xenopus la... [more]
PR6AA_XENLA3.429e-2335.0826S protease regulatory subunit 6A-A OS=Xenopus la... [more]
PRS6A_DICDI5.850e-2335.2926S protease regulatory subunit 6A homolog OS=Dict... [more]
PRS6B_DICDI9.978e-2337.1626S protease regulatory subunit 6B homolog OS=Dict... [more]
PRS6A_ENCCU9.978e-2334.3126S protease regulatory subunit 6A OS=Encephalitoz... [more]
PRS6A_YEAST2.223e-2233.9926S protease regulatory subunit 6A OS=Saccharomyce... [more]
PRS6A_BRACM2.223e-2231.8226S protease regulatory subunit 6A homolog OS=Bras... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186084 ID=CN186084; Name=CN186084; organism=Citrus sinensis; type=EST; length=718bp
GGAGACTTGATCCCAAAGACAATTAGATTCGAACAAATCGAACTCGTTCA
CTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGG
CGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAG
GGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGT
CCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAAC
TCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAG
CCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGT
TCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAA
GTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAAT
GACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGT
CAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTG
GTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCT
ATCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGG
TGTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAG
CTGTGGCTCATCATACTG
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