CN186084 | Citrus Genome Database

Overview


Name	CN186084
Unique Name	CN186084
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	718

Libraries


Library Name	Type
Washington Navel Orange Stored Fruit Pulp cDNA Library	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Csv1_Contig9803	contig	Csv1_Contig9803:46..763.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: CD48A_ARATH (Cell division control protein 48 homolog A OS=Arabidopsis thaliana GN=CDC48A PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.947e-18
Identity = 38/67 (56.72%), Postives = 58/67 (86.57%), Query Frame = 1

Query:  517 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            E++ D  YD +GG+ +Q+ +I+E++ELP++HP+LF+S+G+  PKG+LLYGPPG+GKTL+ARAVA+ T
Sbjct:  199 ERLDDVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 265

HSP 2 Score: 77.411 bits (189), Expect = 8.467e-14
Identity = 33/66 (50.00%), Postives = 51/66 (77.27%), Query Frame = 1

Query:  514 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            V +VP+ +++ IGGL+   +E++E ++ P++HPE FE  G++  KGVL YGPPG GKTLLA+A+A+
Sbjct:  471 VVEVPNVSWNDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 536

[Close]

BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6A_SCHPO (26S protease regulatory subunit 6A OS=Schizosaccharomyces pombe GN=tbp1 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.322e-18
Identity = 45/95 (47.37%), Postives = 62/95 (65.26%), Query Frame = 1

Query:  424 PSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            P   + +  DSY++   LPS+ D  V  M+V++ P   Y  IGGL +QI+E+ E I LP++  + F  LG+  PKG L++GPPGTGKTLLARA A
Sbjct:  146 PGDLIGVNKDSYLIIDKLPSEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPMQQADKFRKLGVKPPKGCLMFGPPGTGKTLLARACA 240

[Close]

BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: TERA2_CAEEL (Transitional endoplasmic reticulum ATPase homolog 2 OS=Caenorhabditis elegans GN=cdc-48.2 PE=1 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 38/76 (50.00%), Postives = 61/76 (80.26%), Query Frame = 1

Query:  490 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            DP+    + E + +  YD +GG+ +Q+ +IKE++ELP++HP+LF+++G+  P+G+LL+GPPGTGKTL+ARAVA+ T
Sbjct:  192 DPIKREEEEEALNEVGYDDLGGVRKQLAQIKEMVELPLRHPQLFKAIGVKPPRGILLFGPPGTGKTLIARAVANET 267

HSP 2 Score: 71.633 bits (174), Expect = 4.646e-12
Identity = 30/66 (45.45%), Postives = 48/66 (72.73%), Query Frame = 1

Query:  514 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            V + P++T+  IGGL    +E++E+++ P++HPE +   G+   +GVL YGPPG GKTLLA+A+A+
Sbjct:  473 VVETPNTTWSDIGGLQNVKRELQELVQYPVEHPEKYLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 538

[Close]

BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: CDC48_SOYBN (Cell division cycle protein 48 homolog OS=Glycine max GN=CDC48 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 37/67 (55.22%), Postives = 58/67 (86.57%), Query Frame = 1

Query:  517 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            E++ +  YD +GG+ +Q+ +I+E++ELP++HP+LF+S+G+  PKG+LLYGPPG+GKTL+ARAVA+ T
Sbjct:  200 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266

HSP 2 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 33/66 (50.00%), Postives = 51/66 (77.27%), Query Frame = 1

Query:  514 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            V +VP+ +++ IGGL+   +E++E ++ P++HPE FE  G++  KGVL YGPPG GKTLLA+A+A+
Sbjct:  472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 537

[Close]

BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: CDC48_CAPAN (Cell division cycle protein 48 homolog OS=Capsicum annuum GN=CAFP PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 37/67 (55.22%), Postives = 58/67 (86.57%), Query Frame = 1

Query:  517 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            E++ +  YD +GG+ +Q+ +I+E++ELP++HP+LF+S+G+  PKG+LLYGPPG+GKTL+ARAVA+ T
Sbjct:  200 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266

HSP 2 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 32/66 (48.48%), Postives = 50/66 (75.76%), Query Frame = 1

Query:  514 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            V +VP+ +++ IGGL+   +E++E ++ P++ PE FE  G++  KGVL YGPPG GKTLLA+A+A+
Sbjct:  472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEPPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 537

[Close]

BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: CD48E_ARATH (Cell division control protein 48 homolog E OS=Arabidopsis thaliana GN=CDC48E PE=2 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 37/67 (55.22%), Postives = 58/67 (86.57%), Query Frame = 1

Query:  517 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            E++ +  YD +GG+ +Q+ +I+E++ELP++HP+LF+S+G+  PKG+LLYGPPG+GKTL+ARAVA+ T
Sbjct:  199 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 265

HSP 2 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 33/66 (50.00%), Postives = 51/66 (77.27%), Query Frame = 1

Query:  514 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            V +VP+ +++ IGGL+   +E++E ++ P++HPE FE  G++  KGVL YGPPG GKTLLA+A+A+
Sbjct:  471 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 536

[Close]

BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: CD48D_ARATH (Cell division control protein 48 homolog D OS=Arabidopsis thaliana GN=CDC48D PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.666e-18
Identity = 37/67 (55.22%), Postives = 58/67 (86.57%), Query Frame = 1

Query:  517 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            E++ +  YD +GG+ +Q+ +I+E++ELP++HP+LF+S+G+  PKG+LLYGPPG+GKTL+ARAVA+ T
Sbjct:  200 ERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVKPPKGILLYGPPGSGKTLIARAVANET 266

HSP 2 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 33/66 (50.00%), Postives = 51/66 (77.27%), Query Frame = 1

Query:  514 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            V +VP+ +++ IGGL+   +E++E ++ P++HPE FE  G++  KGVL YGPPG GKTLLA+A+A+
Sbjct:  472 VVEVPNVSWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIAN 537

[Close]

BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: TERA_DANRE (Transitional endoplasmic reticulum ATPase OS=Danio rerio GN=vcp PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 39/76 (51.32%), Postives = 60/76 (78.95%), Query Frame = 1

Query:  490 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +P+    + E + +  YD IGG+ +Q+ +IKE++ELP++HP LF+++G+  P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct:  187 EPIKREDEEESLNEVGYDDIGGVRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262

HSP 2 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 35/77 (45.45%), Postives = 54/77 (70.13%), Query Frame = 1

Query:  481 SKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            S+ +P      V +VP+ T++ IGGLD   +E++E+++ P++HP+ F   G+   KGVL YGPPG GKTLLA+A+A+
Sbjct:  457 SQSNPSALRETVVEVPNITWEDIGGLDDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533

[Close]

BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: CDC48_EMENI (Cell division control protein 48 OS=Emericella nidulans GN=cdc48 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.400e-18
Identity = 40/82 (48.78%), Postives = 63/82 (76.83%), Query Frame = 1

Query:  472 ILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            I+ S+ +P+    +   + +  YD IGG  +Q+ +I+E++ELP++HP+LF+S+GI  P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct:  206 IIHSEGEPIQREDEENNLNEVGYDDIGGCRKQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 287

HSP 2 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 39/95 (41.05%), Postives = 61/95 (64.21%), Query Frame = 1

Query:  427 STRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            S  V + N  Y L +  PS +  +     V +VP+  ++ IGGL++  +E+ E ++ P+ HPE F+  G++  +GVL YGPPGTGKT+LA+AVA+
Sbjct:  469 SLGVTMENFRYALGVSNPSALREVA----VVEVPNVRWEDIGGLEEVKRELIESVQYPVDHPEKFQKFGLSPSRGVLFYGPPGTGKTMLAKAVAN 559

[Close]

BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: TERA_XENTR (Transitional endoplasmic reticulum ATPase OS=Xenopus tropicalis GN=vcp PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 39/76 (51.32%), Postives = 59/76 (77.63%), Query Frame = 1

Query:  490 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +P+    + E + +  YD IGG  +Q+ +IKE++ELP++HP LF+++G+  P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct:  187 EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262

HSP 2 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 1

Query:  481 SKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            S+ +P      V +VP  T++ IGGL+   +E++E+++ P++HP+ F   G+   KGVL YGPPG GKTLLA+A+A+
Sbjct:  457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533

The following BLAST results are available for this feature:

BLAST of CN186084 vs. ExPASy Swiss-Prot

BLAST of CN186084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183


Match Name	E-value	Identity	Description
CD48A_ARATH	1.947e-18	56.72	Cell division control protein 48 homolog A OS=Arab...	[more]
PRS6A_SCHPO	3.322e-18	47.37	26S protease regulatory subunit 6A OS=Schizosaccha...	[more]
TERA2_CAEEL	5.666e-18	50.00	Transitional endoplasmic reticulum ATPase homolog ...	[more]
CDC48_SOYBN	5.666e-18	55.22	Cell division cycle protein 48 homolog OS=Glycine ...	[more]
CDC48_CAPAN	5.666e-18	55.22	Cell division cycle protein 48 homolog OS=Capsicum...	[more]
CD48E_ARATH	5.666e-18	55.22	Cell division control protein 48 homolog E OS=Arab...	[more]
CD48D_ARATH	5.666e-18	55.22	Cell division control protein 48 homolog D OS=Arab...	[more]
TERA_DANRE	7.400e-18	51.32	Transitional endoplasmic reticulum ATPase OS=Danio...	[more]
CDC48_EMENI	7.400e-18	48.78	Cell division control protein 48 OS=Emericella nid...	[more]
TERA_XENTR	1.262e-17	51.32	Transitional endoplasmic reticulum ATPase OS=Xenop...	[more]

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Properties


Property Name	Value
Genbank description	UCRCS05_0002F11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CN186084 ID=CN186084; Name=CN186084; organism=Citrus sinensis; type=EST; length=718bp
GGAGACTTGATCCCAAAGACAATTAGATTCGAACAAATCGAACTCGTTCA
CTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGG
CGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAG
GGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGT
CCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAAC
TCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAG
CCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGT
TCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAA
GTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAAT
GACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGT
CAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTG
GTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCT
ATCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGG
TGTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAG
CTGTGGCTCATCATACTG