CN186084

Overview
NameCN186084
Unique NameCN186084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:46..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: TERA_XENLA (Transitional endoplasmic reticulum ATPase OS=Xenopus laevis GN=vcp PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 39/76 (51.32%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:  490 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +P+    + E + +  YD IGG  +Q+ +IKE++ELP++HP LF+++G+  P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct:  187 EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262

HSP 2 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:  481 SKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            S+ +P      V +VP  T++ IGGL+   +E++E+++ P++HP+ F   G+   KGVL YGPPG GKTLLA+A+A+
Sbjct:  457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
[Close]
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: TERA_RAT (Transitional endoplasmic reticulum ATPase OS=Rattus norvegicus GN=Vcp PE=1 SV=3)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 39/76 (51.32%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:  490 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +P+    + E + +  YD IGG  +Q+ +IKE++ELP++HP LF+++G+  P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct:  187 EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262

HSP 2 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:  481 SKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            S+ +P      V +VP  T++ IGGL+   +E++E+++ P++HP+ F   G+   KGVL YGPPG GKTLLA+A+A+
Sbjct:  457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
[Close]
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: TERA_PIG (Transitional endoplasmic reticulum ATPase OS=Sus scrofa GN=VCP PE=1 SV=5)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 39/76 (51.32%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:  490 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +P+    + E + +  YD IGG  +Q+ +IKE++ELP++HP LF+++G+  P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct:  187 EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262

HSP 2 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 33/77 (42.86%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:  481 SKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            S+ +P      V +VP  T++ IGGL+   +E++++++ P++HP+ F   G+   KGVL YGPPG GKTLLA+A+A+
Sbjct:  457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQDLVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
[Close]
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: TERA_MOUSE (Transitional endoplasmic reticulum ATPase OS=Mus musculus GN=Vcp PE=1 SV=4)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 39/76 (51.32%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:  490 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +P+    + E + +  YD IGG  +Q+ +IKE++ELP++HP LF+++G+  P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct:  187 EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262

HSP 2 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:  481 SKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            S+ +P      V +VP  T++ IGGL+   +E++E+++ P++HP+ F   G+   KGVL YGPPG GKTLLA+A+A+
Sbjct:  457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
[Close]
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: TERA_HUMAN (Transitional endoplasmic reticulum ATPase OS=Homo sapiens GN=VCP PE=1 SV=4)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 39/76 (51.32%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:  490 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +P+    + E + +  YD IGG  +Q+ +IKE++ELP++HP LF+++G+  P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct:  187 EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262

HSP 2 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:  481 SKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            S+ +P      V +VP  T++ IGGL+   +E++E+++ P++HP+ F   G+   KGVL YGPPG GKTLLA+A+A+
Sbjct:  457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
[Close]
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: TERA_DROME (Transitional endoplasmic reticulum ATPase TER94 OS=Drosophila melanogaster GN=TER94 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 39/76 (51.32%), Postives = 58/76 (76.32%), Query Frame = 1 
Query:  490 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            DP+    + E +    YD IGG  +Q+ +IKE++ELP++HP LF+++G+  P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct:  184 DPIKREEEEESLNAVGYDDIGGCRKQLAQIKEMVELPLRHPSLFKAIGVKPPRGILMYGPPGTGKTLIARAVANET 259

HSP 2 Score: 76.2554 bits (186), Expect = 1.886e-13
Identity = 38/95 (40.00%), Postives = 59/95 (62.11%), Query Frame = 1 
Query:  427 STRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            S  V + N  Y +     +K  P      V +VP++T+  IGGL+   KE++E+++ P++HP+ F   G+   +GVL YGPPG GKTLLA+A+A+
Sbjct:  441 SLAVTMENFRYAM-----TKSSPSALRETVVEVPNTTWTDIGGLESVKKELQELVQYPVEHPDKFLKFGMQPSRGVLFYGPPGCGKTLLAKAIAN 530
[Close]
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: TERA_BOVIN (Transitional endoplasmic reticulum ATPase OS=Bos taurus GN=VCP PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 39/76 (51.32%), Postives = 59/76 (77.63%), Query Frame = 1 
Query:  490 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +P+    + E + +  YD IGG  +Q+ +IKE++ELP++HP LF+++G+  P+G+LLYGPPGTGKTL+ARAVA+ T
Sbjct:  187 EPIKREDEEESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET 262

HSP 2 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 34/77 (44.16%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:  481 SKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            S+ +P      V +VP  T++ IGGL+   +E++E+++ P++HP+ F   G+   KGVL YGPPG GKTLLA+A+A+
Sbjct:  457 SQSNPSALRETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533
[Close]
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: CDCH_HALSA (Protein cdcH OS=Halobacterium salinarium GN=cdcH PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.262e-17
Identity = 38/61 (62.30%), Postives = 54/61 (88.52%), Query Frame = 1 
Query:  535 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            TY+ IGGL+ +I+ ++E++ELP+KHP++F+ LGI  P+GVLL+GPPGTGKTLLA+AVA+ T
Sbjct:  187 TYEDIGGLENEIQRVREMVELPMKHPQIFQKLGIEPPQGVLLHGPPGTGKTLLAKAVANET 247

HSP 2 Score: 80.1073 bits (196), Expect = 1.306e-14
Identity = 37/79 (46.84%), Postives = 53/79 (67.09%), Query Frame = 1 
Query:  481 SKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            S+V+P      + ++P  T+D +GGL +    +KE +E P+  PE F  +G+  P GVLLYGPPGTGKTL+A+AVA+ T
Sbjct:  442 SEVEPSAMREVLVELPKITWDDVGGLTEAKNNVKESVEWPLNQPEKFTRMGVEPPAGVLLYGPPGTGKTLMAKAVANET 520
[Close]
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: CDC48_SCHPO (Cell division cycle protein 48 OS=Schizosaccharomyces pombe GN=cdc48 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.812e-17
Identity = 37/60 (61.67%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:  538 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            YD IGG  +Q+ +I+E++ELP++HP+LF+S+GI  P+G+L+YGPPGTGKTL+ARAVA+ T
Sbjct:  223 YDDIGGCRRQMAQIRELVELPLRHPQLFKSIGIKPPRGILMYGPPGTGKTLMARAVANET 282

HSP 2 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 30/66 (45.45%), Postives = 49/66 (74.24%), Query Frame = 1 
Query:  514 VEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            V +VP+  ++ IGGL++  +E++E +++P+ + E F   G+   KGVL +GPPGTGKTLLA+A+A+
Sbjct:  488 VVEVPNVRWEDIGGLEEVKRELRETVQMPVMYAEKFLRFGVTPSKGVLFFGPPGTGKTLLAKAIAN 553
[Close]
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: CDC48_YEAST (Cell division control protein 48 OS=Saccharomyces cerevisiae GN=CDC48 PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 4.796e-17
Identity = 37/60 (61.67%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:  538 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            YD IGG  +Q+ +I+E++ELP++HP+LF+++GI  P+GVL+YGPPGTGKTL+ARAVA+ T
Sbjct:  213 YDDIGGCRKQMAQIREMVELPLRHPQLFKAIGIKPPRGVLMYGPPGTGKTLMARAVANET 272

HSP 2 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 33/58 (56.90%), Postives = 45/58 (77.59%), Query Frame = 1 
Query:  535 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            T+D +GGLD+  +E+KE +E P+ HP+ +   G++  KGVL YGPPGTGKTLLA+AVA
Sbjct:  485 TWDDVGGLDEIKEELKETVEYPVLHPDQYTKFGLSPSKGVLFYGPPGTGKTLLAKAVA 542
The following BLAST results are available for this feature:
BLAST of CN186084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
TERA_XENLA1.262e-1751.32Transitional endoplasmic reticulum ATPase OS=Xenop... [more]
TERA_RAT1.262e-1751.32Transitional endoplasmic reticulum ATPase OS=Rattu... [more]
TERA_PIG1.262e-1751.32Transitional endoplasmic reticulum ATPase OS=Sus s... [more]
TERA_MOUSE1.262e-1751.32Transitional endoplasmic reticulum ATPase OS=Mus m... [more]
TERA_HUMAN1.262e-1751.32Transitional endoplasmic reticulum ATPase OS=Homo ... [more]
TERA_DROME1.262e-1751.32Transitional endoplasmic reticulum ATPase TER94 OS... [more]
TERA_BOVIN1.262e-1751.32Transitional endoplasmic reticulum ATPase OS=Bos t... [more]
CDCH_HALSA1.262e-1762.30Protein cdcH OS=Halobacterium salinarium GN=cdcH P... [more]
CDC48_SCHPO2.812e-1761.67Cell division cycle protein 48 OS=Schizosaccharomy... [more]
CDC48_YEAST4.796e-1761.67Cell division control protein 48 OS=Saccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186084 ID=CN186084; Name=CN186084; organism=Citrus sinensis; type=EST; length=718bp
GGAGACTTGATCCCAAAGACAATTAGATTCGAACAAATCGAACTCGTTCA
CTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGG
CGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAG
GGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGT
CCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAAC
TCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAG
CCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGT
TCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAA
GTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAAT
GACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGT
CAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTG
GTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCT
ATCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGG
TGTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAG
CTGTGGCTCATCATACTG
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