CN186084

Overview
NameCN186084
Unique NameCN186084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:46..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: MPA_RHOER (Proteasome-associated ATPase OS=Rhodococcus erythropolis GN=mpa PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.396e-16
Identity = 43/85 (50.59%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  457 YVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            Y    I  ++V+ LV    +E+VPD  YD IGGL +QI++I++ +ELP  H +LF    +  PKGVLLYGPPG GKTL+A+AVA+
Sbjct:  210 YAFERIPKAEVEDLV----LEEVPDVHYDDIGGLGRQIEQIRDAVELPFLHKDLFHEYSLRPPKGVLLYGPPGCGKTLIAKAVAN 290          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: MPA_MYCTU (Proteasome-associated ATPase OS=Mycobacterium tuberculosis GN=mpa PE=1 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16
Identity = 42/85 (49.41%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  457 YVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            Y    I  ++V+ LV    +E+VPD +Y  IGGL +QI++I++ +ELP  H EL+    +  PKGVLLYGPPG GKTL+A+AVA+
Sbjct:  228 YAFERIPKAEVEDLV----LEEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVAN 308          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: MPA_MYCLE (Proteasome-associated ATPase OS=Mycobacterium leprae GN=mpa PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16
Identity = 41/85 (48.24%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  457 YVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            Y    +  ++V+ LV    +E+VPD +Y  IGGL +QI++I++ +ELP  H EL+    +  PKGVLLYGPPG GKTL+A+AVA+
Sbjct:  228 YAFERVPKAEVEDLV----LEEVPDVSYQDIGGLTRQIEQIRDAVELPFLHKELYREYALRPPKGVLLYGPPGCGKTLIAKAVAN 308          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: MPA_MYCBO (Proteasome-associated ATPase OS=Mycobacterium bovis GN=mpa PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 4.060e-16
Identity = 42/85 (49.41%), Postives = 59/85 (69.41%), Query Frame = 1
Query:  457 YVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            Y    I  ++V+ LV    +E+VPD +Y  IGGL +QI++I++ +ELP  H EL+    +  PKGVLLYGPPG GKTL+A+AVA+
Sbjct:  228 YAFERIPKAEVEDLV----LEEVPDVSYADIGGLSRQIEQIRDAVELPFLHKELYREYSLRPPKGVLLYGPPGCGKTLIAKAVAN 308          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: SAV_SULAC (Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15
Identity = 36/62 (58.06%), Postives = 52/62 (83.87%), Query Frame = 1
Query:  526 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            P  +++ IG L++  ++I+E++E P++HPELF+ LGI  PKG+LLYGPPGTGKTLLARA+A+
Sbjct:  207 PKVSWEDIGDLEEAKQKIREIVEWPMRHPELFQRLGIDPPKGILLYGPPGTGKTLLARALAN 268          

HSP 2 Score: 77.0258 bits (188), Expect = 1.106e-13
Identity = 33/63 (52.38%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  520 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            +VP   ++ IGGLD   ++++E +E P++ PELF   G+  PKG+LL+GPPGTGKT+LA+AVA
Sbjct:  480 EVPKVNWNDIGGLDNVKQQLREAVEWPLRFPELFTKSGVTPPKGILLFGPPGTGKTMLAKAVA 542          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: CDC48_ENCCU (Cell division control protein 48 OS=Encephalitozoon cuniculi GN=CDC48 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.015e-15
Identity = 37/77 (48.05%), Postives = 57/77 (74.03%), Query Frame = 1
Query:  490 DPLVNLMKVEKVPDST-YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            D  ++  +VEK  +   YD +GG   Q+ +I+E++ELP++H +L+  +G+  PKG+LLYGPPGTGKTL+ARA+A+ T
Sbjct:  190 DETISREEVEKEFNMVGYDDVGGCRAQMAKIRELVELPLRHSQLYSKIGVKPPKGILLYGPPGTGKTLIARAIANET 266          

HSP 2 Score: 70.0922 bits (170), Expect = 1.352e-11
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  490 DPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            DP      V + P+  +  IGGL+Q  +E++E ++ P+++PE F   G+   KGVL YGPPG GKTLLA+AVA
Sbjct:  464 DPSSLRETVIQSPNVKWSDIGGLEQVKQELRETVQYPVEYPEKFIKFGMTPAKGVLFYGPPGCGKTLLAKAVA 536          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: CDAT_PLAF7 (Putative cell division cycle ATPase OS=Plasmodium falciparum (isolate 3D7) GN=PF07_0047 PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 3.437e-15
Identity = 35/67 (52.24%), Postives = 55/67 (82.09%), Query Frame = 1
Query:  517 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            E   D TY+ +GG+ +Q+ +I+E+IELP+K+PE+F S+GI+ PKGVL++G PGTGKT +A+A+A+ +
Sbjct:  519 ENNDDITYEDLGGMKKQLNKIRELIELPLKYPEIFMSIGISAPKGVLMHGIPGTGKTSIAKAIANES 585          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: AFG2_SCHPO (ATPase family gene 2 protein OS=Schizosaccharomyces pombe GN=afg2 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.964e-14
Identity = 34/58 (58.62%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  535 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            T+  IGGL  QI +I++++ELP ++PELF+   I  P+GVLLYGPPGTGKT++ RAVA
Sbjct:  277 TFSSIGGLQAQIAQIRDIVELPFQNPELFKFFNIMPPRGVLLYGPPGTGKTMVMRAVA 334          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX6_KLULA (Peroxisomal biogenesis factor 6 OS=Kluyveromyces lactis GN=PEX6 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 6.483e-14
Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  520 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            K+P+ T+D IGG+D    EI + I++P+KHPELF S G+ +  G+L YGPPGTGKTLLA+A+A
Sbjct:  695 KIPNVTWDDIGGMDVVKGEIMDTIDMPLKHPELFSS-GMKKRSGILFYGPPGTGKTLLAKAIA 756          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX6_SCHPO (Peroxisomal ATPase pex6 OS=Schizosaccharomyces pombe GN=pex6 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:  433 RVALRNDSYVLH--LILPSKVDPLVNLMKVEK------VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            R    NDS +L   +I    VD  +N ++ EK      VP   +D IGGL++    +++ ++LP++ PELF S G+    GVLLYGPPGTGKTLLA+AVA
Sbjct:  611 RTGYDNDSIILSGPIITEQDVDVSINRIRKEKSNTIFTVPKVNWDDIGGLEEAKTVLRDTLQLPLQFPELF-SQGLKPRSGVLLYGPPGTGKTLLAKAVA 709          
The following BLAST results are available for this feature:
BLAST of CN186084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
MPA_RHOER1.396e-1650.59Proteasome-associated ATPase OS=Rhodococcus erythr... [more]
MPA_MYCTU4.060e-1649.41Proteasome-associated ATPase OS=Mycobacterium tube... [more]
MPA_MYCLE4.060e-1648.24Proteasome-associated ATPase OS=Mycobacterium lepr... [more]
MPA_MYCBO4.060e-1649.41Proteasome-associated ATPase OS=Mycobacterium bovi... [more]
SAV_SULAC2.015e-1558.06Protein SAV OS=Sulfolobus acidocaldarius GN=sav PE... [more]
CDC48_ENCCU2.015e-1548.05Cell division control protein 48 OS=Encephalitozoo... [more]
CDAT_PLAF73.437e-1552.24Putative cell division cycle ATPase OS=Plasmodium ... [more]
AFG2_SCHPO4.964e-1458.62ATPase family gene 2 protein OS=Schizosaccharomyce... [more]
PEX6_KLULA6.483e-1457.14Peroxisomal biogenesis factor 6 OS=Kluyveromyces l... [more]
PEX6_SCHPO1.444e-1345.00Peroxisomal ATPase pex6 OS=Schizosaccharomyces pom... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186084 ID=CN186084; Name=CN186084; organism=Citrus sinensis; type=EST; length=718bp
GGAGACTTGATCCCAAAGACAATTAGATTCGAACAAATCGAACTCGTTCA
CTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGG
CGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAG
GGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGT
CCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAAC
TCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAG
CCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGT
TCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAA
GTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAAT
GACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGT
CAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTG
GTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCT
ATCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGG
TGTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAG
CTGTGGCTCATCATACTG
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