CN186084

Overview
NameCN186084
Unique NameCN186084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:46..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: AFG2_YEAST (ATPase family gene 2 protein OS=Saccharomyces cerevisiae GN=AFG2 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.444e-13
Identity = 31/59 (52.54%), Postives = 46/59 (77.97%), Query Frame = 1
Query:  535 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            +Y  +GGLD++I+ +K  IE+P+  P LF S G++ P+G+LL+GPPGTGKT+L R VA+
Sbjct:  243 SYAAVGGLDKEIESLKSAIEIPLHQPTLFSSFGVSPPRGILLHGPPGTGKTMLLRVVAN 301          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: TBP7_YEAST (TAT-binding homolog 7 OS=Saccharomyces cerevisiae GN=YTA7 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 32/57 (56.14%), Postives = 46/57 (80.70%), Query Frame = 1
Query:  538 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            +D IGGLD  I ++KE++ LP+ +PEL+++  I  P+GVL +GPPGTGKTL+ARA+A
Sbjct:  412 FDDIGGLDNYIDQLKEMVALPLLYPELYQNFNITPPRGVLFHGPPGTGKTLMARALA 468          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX6_PICAN (Peroxisomal biogenesis factor 6 OS=Pichia angusta GN=PEX6 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.463e-13
Identity = 35/69 (50.72%), Postives = 51/69 (73.91%), Query Frame = 1
Query:  502 NLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            +++   ++PD  ++ +GGLD    EI + IE+P+KHPELF S G+ +  G+L YGPPGTGKTLLA+A+A
Sbjct:  800 DMIGAPRIPDVKWEDVGGLDVVKDEILDTIEMPLKHPELF-SKGMKKRSGILFYGPPGTGKTLLAKAIA 867          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX6_DEBHA (Peroxisomal biogenesis factor 6 OS=Debaryomyces hansenii GN=PEX6 PE=3 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.202e-13
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  520 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            ++PD  ++ IGGLD    EI + I++P+KHPELF + G+ +  G+L YGPPGTGKTLLA+A+A
Sbjct:  832 RIPDVKWEDIGGLDLVKDEIMDTIDMPLKHPELFSN-GLKKRSGILFYGPPGTGKTLLAKAIA 893          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX6_YEAST (Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisiae GN=PEX6 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 34/63 (53.97%), Postives = 49/63 (77.78%), Query Frame = 1
Query:  520 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            ++P+ T+D IGG+D    EI + I++P+KHPELF S G+ +  G+L YGPPGTGKTL+A+A+A
Sbjct:  725 QIPNVTWDDIGGIDFVKGEILDTIDMPLKHPELFTS-GMKKRSGILFYGPPGTGKTLMAKAIA 786          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX6_CANGA (Peroxisomal biogenesis factor 6 OS=Candida glabrata GN=PEX6 PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 7.167e-13
Identity = 35/62 (56.45%), Postives = 46/62 (74.19%), Query Frame = 1
Query:  523 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            +P+ T+D +GGL      I E I+LP+KHPELF S G+ +  G+L YGPPGTGKTLLA+A+A
Sbjct:  712 IPNVTWDDVGGLSSVKDAIMETIDLPLKHPELFGS-GLKKRSGILFYGPPGTGKTLLAKAIA 772          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: YB7A_SCHPO (Uncharacterized AAA domain-containing protein C16E9.10c OS=Schizosaccharomyces pombe GN=SPBC16E9.10c PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 1
Query:  517 EKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            E   D +   IGGLD  I E+ E++ +PIKHPE+++  GI  P+GVLL+GPPG GKT+LA A+A+
Sbjct:  166 EPPSDISLSDIGGLDDCINELLELVAMPIKHPEVYQYTGIHPPRGVLLHGPPGCGKTMLANALAN 230          

HSP 2 Score: 70.8626 bits (172), Expect = 7.924e-12
Identity = 37/79 (46.84%), Postives = 51/79 (64.56%), Query Frame = 1
Query:  481 SKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +KV P         VP  +++ IG L     E++  I  PIK PEL++S+GI+ P GVLL+GPPG GKTLLA+AVA+ +
Sbjct:  472 AKVQPSSKREGFATVPGVSWNNIGALKSIRVELQMAIVQPIKRPELYQSVGISAPTGVLLWGPPGCGKTLLAKAVANES 550          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: TBP7_CAEEL (TAT-binding homolog 7 OS=Caenorhabditis elegans GN=lex-1 PE=1 SV=3)

HSP 1 Score: 73.9442 bits (180), Expect = 9.361e-13
Identity = 32/58 (55.17%), Postives = 44/58 (75.86%), Query Frame = 1
Query:  538 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711
            +D +GGL   I+ +KEV+  P+ +PE+FE   I  PKGV+ YGPPGTGKTL+ARA+A+
Sbjct:  390 FDQVGGLGHHIQSLKEVVLFPMLYPEVFEKFRINPPKGVVFYGPPGTGKTLVARALAN 447          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX6_DICDI (Peroxisomal biogenesis factor 6 OS=Dictyostelium discoideum GN=pex6 PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.223e-12
Identity = 34/63 (53.97%), Postives = 48/63 (76.19%), Query Frame = 1
Query:  520 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            K+P+ ++D +GGL     EI + I+LP++HP LF S GI +  G+LL+GPPGTGKTLLA+A+A
Sbjct:  912 KIPNVSWDDVGGLANVKSEIMDTIQLPLEHPHLFAS-GIGKRSGILLFGPPGTGKTLLAKAIA 973          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: YEJJ_SCHPO (Uncharacterized AAA domain-containing protein C31G5.19 OS=Schizosaccharomyces pombe GN=SPAC31G5.19 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.597e-12
Identity = 29/58 (50.00%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  535 TYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            +++ +GGLD  I ++KE++ LP+ +PE+F+   +  P+GVL +GPPGTGKTL+ARA+A
Sbjct:  264 SFESVGGLDNYINQLKEMVMLPLLYPEIFQRFNMQPPRGVLFHGPPGTGKTLMARALA 321          
The following BLAST results are available for this feature:
BLAST of CN186084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
AFG2_YEAST1.444e-1352.54ATPase family gene 2 protein OS=Saccharomyces cere... [more]
TBP7_YEAST2.463e-1356.14TAT-binding homolog 7 OS=Saccharomyces cerevisiae ... [more]
PEX6_PICAN2.463e-1350.72Peroxisomal biogenesis factor 6 OS=Pichia angusta ... [more]
PEX6_DEBHA4.202e-1353.97Peroxisomal biogenesis factor 6 OS=Debaryomyces ha... [more]
PEX6_YEAST7.167e-1353.97Peroxisomal ATPase PEX6 OS=Saccharomyces cerevisia... [more]
PEX6_CANGA7.167e-1356.45Peroxisomal biogenesis factor 6 OS=Candida glabrat... [more]
YB7A_SCHPO9.361e-1352.31Uncharacterized AAA domain-containing protein C16E... [more]
TBP7_CAEEL9.361e-1355.17TAT-binding homolog 7 OS=Caenorhabditis elegans GN... [more]
PEX6_DICDI1.223e-1253.97Peroxisomal biogenesis factor 6 OS=Dictyostelium d... [more]
YEJJ_SCHPO1.597e-1250.00Uncharacterized AAA domain-containing protein C31G... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186084 ID=CN186084; Name=CN186084; organism=Citrus sinensis; type=EST; length=718bp
GGAGACTTGATCCCAAAGACAATTAGATTCGAACAAATCGAACTCGTTCA
CTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGG
CGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAG
GGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGT
CCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAAC
TCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAG
CCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGT
TCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAA
GTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAAT
GACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGT
CAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTG
GTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCT
ATCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGG
TGTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAG
CTGTGGCTCATCATACTG
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