CN186084
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX6_PICPA (Peroxisomal biogenesis factor 6 OS=Pichia pastoris GN=PEX6 PE=3 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 2.085e-12 Identity = 33/63 (52.38%), Postives = 48/63 (76.19%), Query Frame = 1 Query: 520 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708 ++P+ ++ +GGLD EI + I++P+KHPELF + GI + G+L YGPPGTGKTLLA+A+A Sbjct: 812 RIPNVKWEDVGGLDVVKDEILDTIDMPMKHPELFSN-GIKKRSGILFYGPPGTGKTLLAKAIA 873
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: TBP7_CAEBR (TAT-binding homolog 7 OS=Caenorhabditis briggsae GN=lex-1 PE=3 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12 Identity = 31/58 (53.45%), Postives = 43/58 (74.14%), Query Frame = 1 Query: 538 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711 +D +GGL I+ +KEV+ P+ +PE+F I PKGV+ YGPPGTGKTL+ARA+A+ Sbjct: 404 FDQVGGLSHHIQSLKEVVLFPMLYPEVFAKFKINPPKGVVFYGPPGTGKTLVARALAN 461
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: RIX7_YEAST (Ribosome biogenesis ATPase RIX7 OS=Saccharomyces cerevisiae GN=RIX7 PE=1 SV=1) HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12 Identity = 35/65 (53.85%), Postives = 46/65 (70.77%), Query Frame = 1 Query: 523 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717 VPD T+ +G L + E+ I PIK PEL+E +GI+ P GVLL+GPPG GKTLLA+AVA+ + Sbjct: 527 VPDVTWANVGALQRVRLELNMAIVQPIKRPELYEKVGISAPGGVLLWGPPGCGKTLLAKAVANES 591 HSP 2 Score: 71.633 bits (174), Expect = 4.646e-12 Identity = 31/61 (50.82%), Postives = 45/61 (73.77%), Query Frame = 1 Query: 526 PDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708 P+S+ +GG+D + ++ E+I LPI HPE+F S G+ P+GVLL+GPPG GKT +A A+A Sbjct: 200 PNSSLKSLGGMDDVVAQLMELIGLPILHPEIFLSTGVEPPRGVLLHGPPGCGKTSIANALA 260
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: ATD2B_HUMAN (ATPase family AAA domain-containing protein 2B OS=Homo sapiens GN=ATAD2B PE=1 SV=2) HSP 1 Score: 72.0182 bits (175), Expect = 3.557e-12 Identity = 34/71 (47.89%), Postives = 48/71 (67.61%), Query Frame = 1 Query: 499 VNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711 V+ M ++K +D IGGL I +KE++ P+ +PE+FE I P+G L YGPPGTGKTL+ARA+A+ Sbjct: 388 VDPMNIDK--SVRFDSIGGLSHHIHALKEMVVFPLLYPEIFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 456
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: NVL_DICDI (Putative ribosome biogenesis ATPase nvl OS=Dictyostelium discoideum GN=nvl PE=3 SV=1) HSP 1 Score: 71.2478 bits (173), Expect = 6.068e-12 Identity = 29/62 (46.77%), Postives = 46/62 (74.19%), Query Frame = 1 Query: 523 VPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708 +P + +GG++ +++I+E IE PI HPE++ LG+ P+G+LL+GP G GKTLLA+A+A Sbjct: 210 IPTINFSNLGGVESCLRDIREHIEYPICHPEIYSHLGVEPPRGILLHGPSGCGKTLLAKAIA 271 HSP 2 Score: 67.3958 bits (163), Expect = 8.761e-11 Identity = 32/75 (42.67%), Postives = 48/75 (64.00%), Query Frame = 1 Query: 484 KVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708 KV P +P+ T+D +G L +E+ I PI++P+ ++++GI P GVL+YGPPG GKTLLA+A+A Sbjct: 547 KVVPAAKREGFATIPNVTWDDVGALSGVREELTNSILRPIRYPKKYKNMGIDSPAGVLMYGPPGCGKTLLAKAIA 621
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: ATAD2_PONAB (ATPase family AAA domain-containing protein 2 OS=Pongo abelii GN=ATAD2 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12 Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1 Query: 538 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711 +D +GGL I +KE++ P+ +PE+FE I P+G L YGPPGTGKTL+ARA+A+ Sbjct: 256 FDSVGGLSNHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 313
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: ATAD2_MOUSE (ATPase family AAA domain-containing protein 2 OS=Mus musculus GN=Atad2 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12 Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1 Query: 538 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711 +D +GGL I +KE++ P+ +PE+FE I P+G L YGPPGTGKTL+ARA+A+ Sbjct: 80 FDSVGGLSSHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 137
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: ATAD2_HUMAN (ATPase family AAA domain-containing protein 2 OS=Homo sapiens GN=ATAD2 PE=1 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.924e-12 Identity = 30/58 (51.72%), Postives = 42/58 (72.41%), Query Frame = 1 Query: 538 YDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAH 711 +D +GGL I +KE++ P+ +PE+FE I P+G L YGPPGTGKTL+ARA+A+ Sbjct: 425 FDSVGGLSNHIAALKEMVVFPLLYPEVFEKFKIQPPRGCLFYGPPGTGKTLVARALAN 482
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX6_HUMAN (Peroxisome assembly factor 2 OS=Homo sapiens GN=PEX6 PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11 Identity = 36/63 (57.14%), Postives = 49/63 (77.78%), Query Frame = 1 Query: 520 KVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708 K+P ++ +GGL + KEI E I+LP++HPEL SLG+ + G+LL+GPPGTGKTLLA+AVA Sbjct: 698 KIPSVSWHDVGGLQEVKKEILETIQLPLEHPELL-SLGLRR-SGLLLHGPPGTGKTLLAKAVA 758
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PEX1_MOUSE (Peroxisome biogenesis factor 1 OS=Mus musculus GN=Pex1 PE=1 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 1.035e-11 Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = 1 Query: 508 MKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717 + + K D +D IGGL + + + + I+LP K+PELF +L I Q G+LLYGPPGTGKTLLA VA + Sbjct: 830 VNLHKPRDLGWDKIGGLHEVRQILMDTIQLPAKYPELFANLPIRQRTGILLYGPPGTGKTLLAGVVARES 899 The following BLAST results are available for this feature:
BLAST of CN186084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 183
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Sequences
The
following sequences are available for this feature:
EST sequence >CN186084 ID=CN186084; Name=CN186084; organism=Citrus sinensis; type=EST; length=718bpback to top |