CN186084

Overview
NameCN186084
Unique NameCN186084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:46..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS10_CAEEL (Probable 26S protease regulatory subunit S10B OS=Caenorhabditis elegans GN=rpt-4 PE=1 SV=2)

HSP 1 Score: 125.561 bits (314), Expect = 2.711e-28
Identity = 69/171 (40.35%), Postives = 100/171 (58.48%), Query Frame = 1
Query:  196 QVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVA 708
            + R     L  L  + +E+  +    + +++ LQ  G  VGEV+K + + K +VK     +YVV              TRV+L   +  +   LP +VDPLV  M  E   + +Y  +GGL +QI+E++EV+ELP+ +PELF+ +GI  PKG LL+GPPGTGKTLLARAVA
Sbjct:   35 ECRDIEQKLKDLRKKESEMTKQFDKSENDIKSLQSVGQIVGEVLKQLSEEKFIVKATNGPRYVVGCRRSINKEELKQGTRVSLDMTTLTIMRQLPREVDPLVYKMSHEDPGNISYSDVGGLAEQIRELREVVELPLINPELFKRVGITPPKGCLLFGPPGTGKTLLARAVA 205          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.888e-28
Identity = 82/219 (37.44%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   79 ETKQPESAA------PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +TK P++A+      P   C  K      E ++ Y L     ++ Q + K      LE ++ E  S+V  L+        P S VG + +++  N  +V      ++ V            P   V L +  + +  +L    DPLV +MKVEK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLLA+AVA+ T
Sbjct:   39 KTKGPDAASKLPLVTPHTQCRLKLLKL--ERIKDYLLMEEEFIRNQEQMKP-----LEEKQEEERSKVDDLRGT------PMS-VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 243          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.888e-28
Identity = 82/219 (37.44%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   79 ETKQPESAA------PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +TK P++A+      P   C  K      E ++ Y L     ++ Q + K      LE ++ E  S+V  L+        P S VG + +++  N  +V      ++ V            P   V L +  + +  +L    DPLV +MKVEK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLLA+AVA+ T
Sbjct:   39 KTKGPDAASKLPLVTPHTQCRLKLLKL--ERIKDYLLMEEEFIRNQEQMKP-----LEEKQEEERSKVDDLRGT------PMS-VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 243          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.888e-28
Identity = 82/219 (37.44%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   79 ETKQPESAA------PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +TK P++A+      P   C  K      E ++ Y L     ++ Q + K      LE ++ E  S+V  L+        P S VG + +++  N  +V      ++ V            P   V L +  + +  +L    DPLV +MKVEK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLLA+AVA+ T
Sbjct:   39 KTKGPDAASKLPLVTPHTQCRLKLLKL--ERIKDYLLMEEEFIRNQEQMKP-----LEEKQEEERSKVDDLRGT------PMS-VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKVEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 243          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PSMR_METMA (Proteasome-activating nucleotidase OS=Methanosarcina mazei GN=pan PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.030e-27
Identity = 66/177 (37.29%), Postives = 101/177 (57.06%), Query Frame = 1
Query:  187 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            L+ Q  Q       LE Q+ +    +R L+ EL  ++     +G V+ V+  ++++V+     +++V            P  +VAL   +  +  ++PS  +P V  M+V +  +  YD IGGLD+QI+E++E +ELP+  PE F  +GI  PKGVLLYG PGTGKTLLA+AVAH T
Sbjct:   41 LEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESVEVDYDQIGGLDEQIQELQEAVELPLTSPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRT 217          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 123.635 bits (309), Expect = 1.030e-27
Identity = 73/188 (38.83%), Postives = 105/188 (55.85%), Query Frame = 1
Query:  154 LRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            L+   L+ I +  +   +   N  RL+ Q +E N   R   ++L+    P S VG + +++  N  +V      ++ V            P   V L +  + +  +L    DP+V +MK+EK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLLA+AVA+ T
Sbjct:   59 LKLLKLERIKDYLMMEDEFIRNQERLKPQ-DEKNEEERSKVDDLR--GTPMS-VGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLSDDTDPMVTVMKLEKAPQETYADIGGLDTQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 242          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PSMR_METAC (Proteasome-activating nucleotidase OS=Methanosarcina acetivorans GN=pan PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 66/177 (37.29%), Postives = 101/177 (57.06%), Query Frame = 1
Query:  187 LQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            L+ Q  Q       LE Q+ +    +R L+ EL  ++     +G V+ V+  ++++V+     +++V            P  +VAL   +  +  ++PS  +P V  M+V +  +  YD IGGLD+QI+E++E +ELP+  PE F  +GI  PKGVLLYG PGTGKTLLA+AVAH T
Sbjct:   41 LEEQCSQIESEKRYLENQKIKYEREIRKLQSELDRMKTSPLIIGTVIDVIKNDRIIVRSSNGPQFLVNVSQYIDEKKLLPGAKVALNQHTLAIAEVIPSTEEPFVAAMEVIESIEVDYDQIGGLDEQIQELQEAVELPLIEPERFARIGIEPPKGVLLYGLPGTGKTLLAKAVAHRT 217          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS7_PRUPE (26S protease regulatory subunit 7 OS=Prunus persica GN=RPT1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 70/193 (36.27%), Postives = 105/193 (54.40%), Query Frame = 1
Query:  166 YLQHIHELQLQVRQKTHNLNRLEAQRNE-----LNSRVRMLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            Y  HI + + +V+     +N L   +         S+  ++ ++  + +E    V    K++  N    K ++ V    K+VV               RV +  + Y + + LP K+DP V +M VE+ PD TY+ +GG  +QI++++EV+ELP+ HPE F  LGI  PKGVL YGPPGTGKTLLARAVA+ T
Sbjct:   33 YSTHIKKAEKEVKDLAKKVNDLCGIKESDTGLAAPSQWDLVSDKQMMQEEQPLQVARCTKIINPNSEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVDRNKYQIQIPLPPKIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPMLHPEKFVKLGIDPPKGVLCYGPPGTGKTLLARAVANRT 225          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS7B_ARATH (26S protease regulatory subunit 7 homolog B OS=Arabidopsis thaliana GN=RPT1B PE=3 SV=2)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 70/161 (43.48%), Postives = 95/161 (59.01%), Query Frame = 1
Query:  247 ELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKN----KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +L S  +M++EE  LL      V    +++  N    K +V +   GKYVV               RV +    Y + + LP K+DP V +M VE+ PD+TY  IGG  +QI++I+EV+ELP+ HPE F  LGI  PKGVL YGPPG+GKTL+ARAVA+ T
Sbjct:  109 DLVSDKQMMQEEQPLL------VATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVDQKKYQIQIPLPPKIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPMLHPEKFVRLGIDPPKGVLCYGPPGSGKTLVARAVANRT 263          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.757e-27
Identity = 81/219 (36.99%), Postives = 115/219 (52.51%), Query Frame = 1
Query:   79 ETKQPESAA------PEEVCAAKGASKQGEGLRQYYLQHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +TK P++A+      P   C  K      E ++ Y L     ++ Q + K      LE ++ E  S+V  L+        P S VG + +++  N  +V      ++ V            P   V L +  + +  +L    DPLV +MK+EK P  TY  IGGLD QI+EIKE +ELP+ HPE +E +GI  PKGV+LYGPPGTGKTLLA+AVA+ T
Sbjct:   39 KTKGPDAASKPPLVTPHTQCRLKLLKL--ERIKDYLLMEEEFIRNQEQMKP-----LEEKQEEERSKVDDLRGT------PMS-VGTLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDLLEPGCSVLLNHKVHAVIGVLMDDTDPLVTVMKLEKAPQETYADIGGLDNQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGPPGTGKTLLAKAVANQT 243          
The following BLAST results are available for this feature:
BLAST of CN186084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
PRS10_CAEEL2.711e-2840.35Probable 26S protease regulatory subunit S10B OS=C... [more]
PRS4_RAT7.888e-2837.4426S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE7.888e-2837.4426S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN7.888e-2837.4426S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PSMR_METMA1.030e-2737.29Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS4_DROME1.030e-2738.8326S protease regulatory subunit 4 OS=Drosophila me... [more]
PSMR_METAC1.757e-2737.29Proteasome-activating nucleotidase OS=Methanosarci... [more]
PRS7_PRUPE1.757e-2736.2726S protease regulatory subunit 7 OS=Prunus persic... [more]
PRS7B_ARATH1.757e-2743.4826S protease regulatory subunit 7 homolog B OS=Ara... [more]
PRS4_CHICK1.757e-2736.9926S protease regulatory subunit 4 OS=Gallus gallus... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186084 ID=CN186084; Name=CN186084; organism=Citrus sinensis; type=EST; length=718bp
GGAGACTTGATCCCAAAGACAATTAGATTCGAACAAATCGAACTCGTTCA
CTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGG
CGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAG
GGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGT
CCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAAC
TCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAG
CCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGT
TCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAA
GTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAAT
GACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGT
CAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTG
GTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCT
ATCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGG
TGTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAG
CTGTGGCTCATCATACTG
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