CN186084

Overview
NameCN186084
Unique NameCN186084
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length718
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:46..763. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.066e-24
Identity = 62/189 (32.80%), Postives = 100/189 (52.91%), Query Frame = 1
Query:  172 QHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLK-------EELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            + + +L  + ++    L  LE Q   +    + LK       EE++ +Q     +G+ ++ + +N  +V       Y V            P+  VAL   S  L  +LP   D  + ++  ++ PD  Y  IGG+D Q +E++E +ELP+ H EL++ +GI  P+GVL+YGPPG GKT+LA+AVAHHT
Sbjct:   35 EDLEDLYSRYKKLQQELEFLEVQEEYIKDEQKNLKKEFLHAQEEVKRIQSIPLVIGQFLEAVDQNTAIVASTTGSNYYVRMVSTIDRELLKPNASVALHKHSNALVDVLPPAADSSIMMLTSDQKPDVMYADIGGMDIQKQEVREAVELPLTHFELYKQIGIDPPRGVLMYGPPGCGKTMLAKAVAHHT 223          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 113.235 bits (282), Expect = 1.392e-24
Identity = 58/148 (39.19%), Postives = 89/148 (60.14%), Query Frame = 1
Query:  274 KEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            K++L+ ++     +G + +++  +  +V       Y V            P   V L + +  +  +L    DP+V++MK++K P  +Y  IGGL+ QI+EIKE +ELP+ HPEL+E +GI  PKGV+LYG PGTGKTLLA+AVA+ T
Sbjct:   93 KKQLEEIRGNPLSIGTLEEIIDDDHAIVTSPTMPDYYVSILSFVDKELLEPGCSVLLHHKTMSIVGVLQDDADPMVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT 240          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS7_YEAST (26S protease regulatory subunit 7 homolog OS=Saccharomyces cerevisiae GN=RPT1 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 56/124 (45.16%), Postives = 76/124 (61.29%), Query Frame = 1
Query:  346 KVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            K ++ +    K+VV               RV +    Y + L LP ++DP V +M VE+ PD TY  +GG   QI++++EV+ELP+  PE F +LGI  PKG+LLYGPPGTGKTL ARAVA+ T
Sbjct:  144 KYVINLKQIAKFVVGLGERVSPTDIEEGMRVGVDRSKYNIELPLPPRIDPSVTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT 267          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6B_ASPNG (26S protease regulatory subunit 6B homolog OS=Aspergillus niger GN=tbpA PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.375e-24
Identity = 62/182 (34.07%), Postives = 101/182 (55.49%), Query Frame = 1
Query:  172 QHIHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +H+  +QLQ          ++ ++  L   +   +EE++ +Q     +G+ ++ + +N  +V+      YVV            PS+ VAL   S  L  ILP + D  + ++   + PD TY  +GGLD Q +EI+E +ELP+   +L++ +GI  P+GVLLYGPPGTGKT+L +AVA+ T
Sbjct:   50 RHLEYIQLQEEY-------IKDEQRSLKRELVRAQEEIKRIQSVPLVIGQFMEAIDQNTGIVQSSTGSNYVVRILSTLDREKLKPSSSVALHRHSNALVDILPPEADSSIAMLGENEKPDVTYADVGGLDMQKQEIREAVELPLTQFDLYKQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 224          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6B_YEAST (26S protease regulatory subunit 6B homolog OS=Saccharomyces cerevisiae GN=RPT3 PE=1 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.102e-24
Identity = 62/180 (34.44%), Postives = 100/180 (55.56%), Query Frame = 1
Query:  178 IHELQLQVRQKTHNLNRLEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            + +L+ +    T   + ++ ++  L   ++  +EE++ +Q     +G+ ++ + +N  +V       YVV            PS  VAL   S  L  ILP   D  +++M   + PD TY  +GGLD Q +EI+E +ELP+   +L+E +GI  P+GVLLYGPPGTGKT+L +AVA+ T
Sbjct:   51 LKKLEKEYELLTLQEDYIKDEQRHLKRELKRAQEEVKRIQSVPLVIGQFLEPIDQNTGIVSSTTGMSYVVRILSTLDRELLKPSMSVALHRHSNALVDILPPDSDSSISVMGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 230          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6B_CAEEL (Probable 26S protease regulatory subunit 6B OS=Caenorhabditis elegans GN=rpt-3 PE=2 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 4.051e-24
Identity = 62/185 (33.51%), Postives = 101/185 (54.59%), Query Frame = 1
Query:  169 LQHIHELQLQVRQKTHNLNR--LEAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            L H+  ++  ++ +T NL +  L AQ            EE++ +Q     +G+ ++ + +N  +V       Y V            P   VAL   S  L  +LP + D  + +++ ++ PD +Y  IGGLD Q +E++E +ELP+ H EL++ +GI  P+GVL+YGPPG GKT+LA+AVA +T
Sbjct:   47 LAHLQVMEDYIKLETRNLEKELLHAQ------------EEVKRIQSVPLVIGQFLEAVDQNHAIVGSTTGSNYYVRVLSILDRELLKPGCSVALHKYSNALVDVLPPEADSSIQMLRPDEKPDISYGDIGGLDMQKQEVREAVELPLTHGELYQQIGIDPPRGVLMYGPPGCGKTMLAKAVAANT 219          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS4_ENCCU (26S protease regulatory subunit 4 homolog OS=Encephalitozoon cuniculi GN=RPT2 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 6.910e-24
Identity = 50/82 (60.98%), Postives = 68/82 (82.93%), Query Frame = 1
Query:  472 ILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +L  ++DP+VN+MK+EK P  TY  IGGL++QI+EIKE +ELP+ +PEL++ +GI  PKGV+LYG PGTGKTLLA+AVA+ T
Sbjct:  146 VLEGEMDPMVNVMKLEKAPSETYADIGGLEEQIQEIKESVELPLTNPELYQEMGIKPPKGVILYGLPGTGKTLLAKAVANQT 227          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6B_SCHPO (26S protease regulatory subunit 6B homolog OS=Schizosaccharomyces pombe GN=rpt3 PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 9.025e-24
Identity = 64/187 (34.22%), Postives = 101/187 (54.01%), Query Frame = 1
Query:  184 ELQLQVRQKT--HNLNRLEAQRNELNSRVRMLK-------EELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            E+ L  R K     L  L+ Q   +    + LK       EE++ +Q     +G+ ++ + +N  +V       YVV            PS  VAL+  S  L  ILP + D  +++++ ++ PD +Y  +GGLD Q +E++E +ELP+   +L+  +GI  P+GVLLYGPPGTGKT+L +AVA+ T
Sbjct:    6 EIDLYNRWKALERQLEMLDLQEGFIKEDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVGSTTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQGDLYRQIGIDPPRGVLLYGPPGTGKTMLVKAVANST 192          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PSMR2_HALSA (Proteasome-activating nucleotidase 2 OS=Halobacterium salinarium GN=pan2 PE=3 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.179e-23
Identity = 64/190 (33.68%), Postives = 105/190 (55.26%), Query Frame = 1
Query:  157 RQYYLQHIHELQLQVRQKTHNLNRL---EAQRNELNSRVRMLKEELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            +Q  L+ + E    + ++    +RL    A+ N+   ++  L  E + L++   ++  V ++  +  V +K H   +  +            P +RVA+ N   V+   L  + D    +M+V+  PD  Y+ IGGLD Q++E++E +ELP+K P LFE++GI  P GVLL+GPPGTGKTL+A+AVA  T
Sbjct:   20 QQDKLEALEEQLSTLEEENEERDRLLDANAENNKYQQKLERLSHENKKLKQSPLFIATVQELTDEGAV-IKQHGNNQEALTEVTDELRATLEPGSRVAVNNSLSVVRQ-LDDEADVRARVMEVDDSPDVGYEDIGGLDDQLREVRETVELPMKDPGLFETVGINPPSGVLLHGPPGTGKTLMAKAVASQT 207          
BLAST of CN186084 vs. ExPASy Swiss-Prot
Match: PRS6B_ENCCU (26S protease regulatory subunit 6B homolog OS=Encephalitozoon cuniculi GN=ECU08_1970 PE=1 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.539e-23
Identity = 63/184 (34.24%), Postives = 97/184 (52.72%), Query Frame = 1
Query:  187 LQLQVRQKTHNLNRLEAQRNELNSRVRMLK-------EELQLLQEPGSYVGEVVKVMGKNKVLVKVHPEGKYVVXXXXXXXXXXXXPSTRVALRNDSYVLHLILPSKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPIKHPELFESLGIAQPKGVLLYGPPGTGKTLLARAVAHHT 717
            L ++ +Q    L  LE +   +   +  LK       EEL  ++     +G+ ++ +  +  +V       +VV            P+T VAL   S  +  +LP +VD  + +M   + P  TY  +GGLD Q +EIKE +ELP+   +L+  +GI  P+GVLLYGPPGTGKT+L +AVA+HT
Sbjct:    9 LFVRYKQMERKLRLLEIREGYVRKEIETLKREERHSREELDRVKSVPLIMGQFLEPIDSSTAIVGSTAGSNFVVRILSTVDRELLKPNTTVALHRHSSAIVGVLPPEVDSTIPVMGESEKPSVTYGDVGGLDVQKQEIKETVELPLLQSDLYRQIGIDPPQGVLLYGPPGTGKTMLVKAVANHT 192          
The following BLAST results are available for this feature:
BLAST of CN186084 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 183
Match NameE-valueIdentityDescription
PRS6B_MOUSE1.066e-2432.8026S protease regulatory subunit 6B OS=Mus musculus... [more]
PRS4_YEAST1.392e-2439.1926S protease regulatory subunit 4 homolog OS=Sacch... [more]
PRS7_YEAST2.375e-2445.1626S protease regulatory subunit 7 homolog OS=Sacch... [more]
PRS6B_ASPNG2.375e-2434.0726S protease regulatory subunit 6B homolog OS=Aspe... [more]
PRS6B_YEAST3.102e-2434.4426S protease regulatory subunit 6B homolog OS=Sacc... [more]
PRS6B_CAEEL4.051e-2433.51Probable 26S protease regulatory subunit 6B OS=Cae... [more]
PRS4_ENCCU6.910e-2460.9826S protease regulatory subunit 4 homolog OS=Encep... [more]
PRS6B_SCHPO9.025e-2434.2226S protease regulatory subunit 6B homolog OS=Schi... [more]
PSMR2_HALSA1.179e-2333.68Proteasome-activating nucleotidase 2 OS=Halobacter... [more]
PRS6B_ENCCU1.539e-2334.2426S protease regulatory subunit 6B homolog OS=Ence... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_r Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186084 ID=CN186084; Name=CN186084; organism=Citrus sinensis; type=EST; length=718bp
GGAGACTTGATCCCAAAGACAATTAGATTCGAACAAATCGAACTCGTTCA
CTCGGAAAGAATGGCCGCTGTAGGAATCGAAACGAAGCAGCCGGAATCGG
CGGCGCCAGAGGAGGTGTGTGCGGCGAAAGGAGCATCGAAACAAGGAGAG
GGATTGAGGCAATACTACCTCCAACACATTCACGAACTCCAGCTCCAAGT
CCGTCAAAAAACCCACAATCTCAATCGCCTCGAAGCCCAGCGTAACGAAC
TCAATTCTAGAGTGCGGATGCTTAAAGAAGAATTACAGCTTCTTCAAGAG
CCTGGATCCTATGTCGGTGAAGTTGTTAAAGTTATGGGAAAAAATAAGGT
TCTTGTTAAGGTTCATCCTGAGGGGAAATATGTTGTTGATATTGATAAAA
GTATTGATATAACCAAGATCACTCCGTCAACAAGAGTTGCACTTCGTAAT
GACAGCTATGTTCTTCATTTGATCCTGCCAAGCAAAGTAGATCCCCTGGT
CAACCTTATGAAGGTTGAAAAGGTCCCTGATTCTACATATGACATGATTG
GTGGCCTTGATCAGCAAATTAAGGAGATCAAGGAGGTCATTGAGCTTCCT
ATCAAACATCCCGAATTGTTCGAGTCTCTTGGAATAGCTCAACCCAAGGG
TGTATTGCTATATGGACCACCTGGTACTGGCAAAACACTGTTGGCTAGAG
CTGTGGCTCATCATACTG
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