CN186083

Overview
NameCN186083
Unique NameCN186083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS8_XENLA (26S protease regulatory subunit 8 OS=Xenopus laevis GN=psmc5 PE=2 SV=2)

HSP 1 Score: 315.464 bits (807), Expect = 2.104e-85
Identity = 162/196 (82.65%), Postives = 180/196 (91.84%), Query Frame = -1
Query:  189 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK*SFPCAVLC 776
            QK+IGEG+RMVRELFVMAREHAPSIIFMDEIDSIGS R+E GSG GDSEVQRTMLELLNQLDGFEA+  IKV+MATNRIDILD ALLRPGRIDRKIEFP PNEE+RLDILKIHSR+MNL RGI+L+KIAE M GASGAE+K VCTEAGM+ALRERR+HVTQEDFEMAVAKVM+K++EKNMS++KLWK  F   +LC
Sbjct:  216 QKFIGEGARMVRELFVMAREHAPSIIFMDEIDSIGS-RLEGGSG-GDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDSALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQKDSEKNMSIKKLWKCFFLVPILC 409          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS8_NAEFO (26S protease regulatory subunit 8 homolog OS=Naegleria fowleri PE=2 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 5.731e-83
Identity = 154/187 (82.35%), Postives = 168/187 (89.84%), Query Frame = -1
Query:  216 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 776
            QKYIGEGS+MVRELFVMAREHAPSIIFMDEIDSIGS R E G G GDSEVQRTMLELLNQLDGFE++  IK++MATNRIDILD ALLRPGRIDRKIEFPNPNE +RLDILKIHSRRMNL RGI+L+KIA  + GASGAE+KA CTEAGMFALRERR+HVTQED EMAVAKVMK+  E NMS +KL+K
Sbjct:  228 QKYIGEGSKMVRELFVMAREHAPSIIFMDEIDSIGSTRTEGGKGGGDSEVQRTMLELLNQLDGFESTQNIKIIMATNRIDILDPALLRPGRIDRKIEFPNPNELARLDILKIHSRRMNLTRGINLRKIASMLGGASGAEIKATCTEAGMFALRERRVHVTQEDLEMAVAKVMKRGDESNMSFKKLFK 414          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS8_SCHPO (26S protease regulatory subunit 8 homolog OS=Schizosaccharomyces pombe GN=let1 PE=2 SV=1)

HSP 1 Score: 302.753 bits (774), Expect = 1.411e-81
Identity = 154/187 (82.35%), Postives = 168/187 (89.84%), Query Frame = -1
Query:  216 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 776
            QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS+R +S  G+GDSEVQRTMLELLNQLDGFEA+  IKV+MATNRIDILD ALLRPGRIDRKIEFP P+ E+R +IL+IHSR MNL RGIDLK IAEKMNGASGAELK VCTEAGMFALRERR+HVTQEDFE+AVAKV+ K     MSL+KL+K
Sbjct:  217 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRSDSSGGSGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPSAEARAEILRIHSRSMNLTRGIDLKSIAEKMNGASGAELKGVCTEAGMFALRERRVHVTQEDFELAVAKVLNKGDSGEMSLQKLFK 403          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS8_YEAST (26S protease regulatory subunit 8 homolog OS=Saccharomyces cerevisiae GN=RPT6 PE=1 SV=4)

HSP 1 Score: 290.812 bits (743), Expect = 5.550e-78
Identity = 147/187 (78.61%), Postives = 166/187 (88.77%), Query Frame = -1
Query:  216 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 776
            QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGS R+E GSG GDSEVQRTMLELLNQLDGFE S  IK++MATNR+DILD ALLRPGRIDRKIEFP P+  +R +IL+IHSR+MNL RGI+L+K+AEKMNG SGA++K VCTEAGM+ALRERRIHVTQEDFE+AV KVM K  E  +S+ KL+K
Sbjct:  220 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVE-GSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNKNQETAISVAKLFK 405          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS8_ENCCU (26S protease regulatory subunit 8 homolog OS=Encephalitozoon cuniculi GN=RPT6 PE=1 SV=1)

HSP 1 Score: 286.574 bits (732), Expect = 1.047e-76
Identity = 148/187 (79.14%), Postives = 164/187 (87.70%), Query Frame = -1
Query:  216 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLWK 776
            QKYIGEGSR+VRELF+MAREHAPSIIFMDEIDSIGS R +S  G+ DSEVQRTMLELLNQLDGFE+ N IKV+MATNRIDILD ALLR GRIDRKIEFP PNE +RL+ILKIHSR+MNL +GIDL+ IA KM G SGAE+KAVCTEAGM+ALRERR+HVTQEDFEMAV KV+KK  + N  LRKL K
Sbjct:  268 QKYIGEGSRLVRELFIMAREHAPSIIFMDEIDSIGSTRGDSNKGS-DSEVQRTMLELLNQLDGFESHNNIKVIMATNRIDILDPALLRTGRIDRKIEFPPPNESARLEILKIHSRKMNLTKGIDLETIASKMVGCSGAEVKAVCTEAGMYALRERRVHVTQEDFEMAVHKVLKKTGDLNSDLRKLLK 453          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_PYRHO (Proteasome-activating nucleotidase OS=Pyrococcus horikoshii GN=pan PE=3 SV=1)

HSP 1 Score: 209.92 bits (533), Expect = 1.245e-53
Identity = 107/175 (61.14%), Postives = 139/175 (79.43%), Query Frame = -1
Query:  252 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 776
            +KYIGEG+R+V ELF +A+E AP+IIF+DEID+IG+ RM+  +G G+ EV RT+++LL ++DGF+    +KV+ ATNR DILD ALLRPGR DR IE P P+ E RL+ILK+H+RRM L +G+DL+ IAE   GASGA+LKA+ TEAGMFA+RERR +VTQEDF  AV KV+  E
Sbjct:  212 RKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTG-GEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KGVDLRAIAEMTEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAVDKVLGNE 384          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_PYRFU (Proteasome-activating nucleotidase OS=Pyrococcus furiosus GN=pan PE=3 SV=1)

HSP 1 Score: 208.764 bits (530), Expect = 2.774e-53
Identity = 106/175 (60.57%), Postives = 139/175 (79.43%), Query Frame = -1
Query:  252 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 776
            +KYIGEG+R+V ELF +A+E AP+IIF+DEID+IG+ R++  +G G+ EV RT+++LL ++DGF+    +KV+ ATNR DILD ALLRPGR DR IE P P+ E RL+ILK+H+RRM L RG+DL+ IAE   GASGA+LKA+ TEAGMFA+RERR +VTQEDF  A+ KV+  E
Sbjct:  209 RKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRLDETTG-GEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-RGVDLRLIAELTEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAIDKVLGNE 381          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_METKA (Proteasome-activating nucleotidase OS=Methanopyrus kandleri GN=pan PE=3 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 3.623e-53
Identity = 106/186 (56.99%), Postives = 142/186 (76.34%), Query Frame = -1
Query:  219 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNMSLRKLW 776
            QK+IGEG+R+VRELF +ARE APSIIF+DEID+IG+ RM   + +GD EVQRT+ +LL ++DGF+  + IKV+ ATNR DILD ALLRPGR DR I+ P P+EE R +I KIH+R MNL   +DL+K+A+   GASGA++KA+CTEAGM A+RE R  VT +DF  AV +VM K+ E++   ++ +
Sbjct:  251 QKFIGEGARLVRELFELAREKAPSIIFIDEIDAIGARRMRDAT-SGDREVQRTLTQLLAEMDGFDPLDDIKVIAATNRKDILDPALLRPGRFDRHIKIPLPDEEGRYEIFKIHTRDMNLAEDVDLQKLAKITEGASGADIKAICTEAGMMAIREDRDIVTMDDFLKAVDRVMGKKEEESGEFKRAY 435          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_THEON (Proteasome-activating nucleotidase OS=Thermococcus onnurineus (strain NA1) GN=pan PE=3 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.732e-53
Identity = 105/175 (60.00%), Postives = 141/175 (80.57%), Query Frame = -1
Query:  252 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 776
            +K+IGEG+R+V ELF +A+E AP+IIF+DEID+IG+ RM+  +G G+ EV RT+++LL ++DGF+ S  +K++ ATNR DILD ALLRPGR DR IE P PN +SRL+ILKIH++RMNL +G+DL+ IAE   GASGA+LKA+  EAGMFA+R+RR +VTQEDF  A+ KV+  E
Sbjct:  211 RKFIGEGARLVHELFELAKEKAPAIIFIDEIDAIGAKRMDETTG-GEREVNRTLMQLLAEMDGFDPSGNVKIIAATNRPDILDPALLRPGRFDRLIEVPLPNFKSRLEILKIHTKRMNL-KGVDLRIIAEMTEGASGADLKAITMEAGMFAIRDRREYVTQEDFLKAIEKVLGSE 383          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_PYRAB (Proteasome-activating nucleotidase OS=Pyrococcus abyssi GN=pan PE=3 SV=1)

HSP 1 Score: 206.453 bits (524), Expect = 1.377e-52
Identity = 106/175 (60.57%), Postives = 138/175 (78.86%), Query Frame = -1
Query:  252 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 776
            +KYIGEG+R+V ELF +A+E AP+IIF+DEID+IG+ RM+  +G G+ EV RT+++LL ++DGF+    +KV+ ATNR DILD ALLRPGR DR IE P P+ E RL+ILK+H+RRM L + +DL+ IAE   GASGA+LKA+ TEAGMFA+RERR +VTQEDF  AV KV+  E
Sbjct:  212 RKYIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTG-GEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFEGRLEILKVHTRRMKL-KNVDLRVIAEITEGASGADLKAIATEAGMFAIRERRTYVTQEDFLKAVDKVLGNE 384          
The following BLAST results are available for this feature:
BLAST of CN186083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS8_XENLA2.104e-8582.6526S protease regulatory subunit 8 OS=Xenopus laevi... [more]
PRS8_NAEFO5.731e-8382.3526S protease regulatory subunit 8 homolog OS=Naegl... [more]
PRS8_SCHPO1.411e-8182.3526S protease regulatory subunit 8 homolog OS=Schiz... [more]
PRS8_YEAST5.550e-7878.6126S protease regulatory subunit 8 homolog OS=Sacch... [more]
PRS8_ENCCU1.047e-7679.1426S protease regulatory subunit 8 homolog OS=Encep... [more]
PSMR_PYRHO1.245e-5361.14Proteasome-activating nucleotidase OS=Pyrococcus h... [more]
PSMR_PYRFU2.774e-5360.57Proteasome-activating nucleotidase OS=Pyrococcus f... [more]
PSMR_METKA3.623e-5356.99Proteasome-activating nucleotidase OS=Methanopyrus... [more]
PSMR_THEON4.732e-5360.00Proteasome-activating nucleotidase OS=Thermococcus... [more]
PSMR_PYRAB1.377e-5260.57Proteasome-activating nucleotidase OS=Pyrococcus a... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186083 ID=CN186083; Name=CN186083; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTTGCATGCGAATTTAAATTTAGATAAAACCGTTTG
CAAATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACATACAGTCA
GGCTAAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGT
TAAGGACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGC
ACATGGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTG
TTTCTTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTT
ACATGGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACAC
AGCCTTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCT
TCAAATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGG
ATATCAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTC
AATTCGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTG
TCGCCATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGG
TTGAGCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCT
GCCAGATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAA
TGATAGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATT
CTGGAGCCTTCTCCAATGTATTTCTG
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