CN186083

Overview
NameCN186083
Unique NameCN186083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6B_MOUSE (26S protease regulatory subunit 6B OS=Mus musculus GN=Psmc4 PE=1 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 9.889e-43
Identity = 87/179 (48.60%), Postives = 126/179 (70.39%), Query Frame = -1
Query:  240 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKN 776
            QKY+GEG RMVR++F +A+E+AP+IIF+DEID+I + R ++ +G  D EVQR +LELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  I    + +MNL   +DL+    + +  SGA++ ++C   GM A+RE    V  +DFE A   V+KK+ +++
Sbjct:  237 QKYLGEGPRMVRDVFRLAKENAPAIIFIDEIDAIATKRFDAQTG-ADREVQRILLELLNQMDGFDQNVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADINSICQARGMLAVRETAYIVLAKDFEKAYKTVIKKDEQEH 414          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR1_HALSA (Proteasome-activating nucleotidase 1 OS=Halobacterium salinarium GN=pan1 PE=3 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.687e-42
Identity = 87/180 (48.33%), Postives = 131/180 (72.78%), Query Frame = -1
Query:  240 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAK-VMKKETEKN 776
            +K+IGEGSR+VR+LF +A +  P+IIF+DEID++ + R +S + +GD+EVQRTM++LL+++DGF+    I+++ ATNR D+LD A+LRPGR DR IE PNPN ++R  IL+IH+  MN+   +D   +A      SGA+L ++ TEAGMFA+R+ R  V ++DF+ A  K V + +TE +
Sbjct:  224 RKFIGEGSRLVRDLFELAEQKDPAIIFIDEIDAVAAKRTDSKT-SGDAEVQRTMMQLLSEMDGFDERGDIRIIAATNRFDMLDSAILRPGRFDRLIEVPNPNPDARERILEIHAGEMNVADSVDFSDLAADTAEFSGAQLASLATEAGMFAIRDDRDEVHRQDFDDAYEKLVAEGDTESS 402          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS6B_SOLTU (26S protease regulatory subunit 6B homolog OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 172.94 bits (437), Expect = 1.687e-42
Identity = 85/174 (48.85%), Postives = 125/174 (71.84%), Query Frame = -1
Query:  255 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKK 776
            QKY+GEG RMVR++F +A+E+AP+IIF+DE+D+I +AR ++ +G  D EVQR ++ELLNQ+DGF+ +  +KV+MATNR D LD ALLRPGR+DRKIEFP P+   +  + ++ + +MNL   +DL+    + +  S AE+ A+C EAGM A+R+ R  +  +DFE      +KK
Sbjct:  232 QKYLGEGPRMVRDVFRLAKENAPAIIFIDEVDAIATARFDAQTG-ADREVQRILMELLNQMDGFDQTVNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFQVCTAKMNLGDEVDLEDYVSRPDKISAAEITAICQEAGMHAVRKNRYVILPKDFEKGYRTNVKK 404          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_SULSO (Proteasome-activating nucleotidase OS=Sulfolobus solfataricus GN=pan PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.877e-42
Identity = 87/185 (47.03%), Postives = 133/185 (71.89%), Query Frame = -1
Query:  225 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV-MKKETEKNMSLRK 776
            QK++GEG+R+VRELF MA+  APSIIF+DEID+IG+ R++ G+ +G+ E+QRT+++LL +LDGF+  + +K++ ATNRIDILD ALLRPGR DR IE P P+ + R +I  I+ ++M +   I+L+ +++   G SGA++K VC EA   A+R+ R  VT  D   A+ K+ +K+   ++M  R+
Sbjct:  206 QKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDGFDPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFKGRTEIFNIYLKKMKIEDNINLELLSQLTEGFSGADIKNVCVEAAYMAIRDGRNKVTMNDLVEAINKINVKRNKMESMKERR 389          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_SULIN (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=pan PE=3 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.877e-42
Identity = 87/185 (47.03%), Postives = 132/185 (71.35%), Query Frame = -1
Query:  225 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV-MKKETEKNMSLRK 776
            QK++GEG+R+VRELF MA+  APSIIF+DEID+IG+ R++ G+ +G+ E+QRT+++LL +LDGF   + +K++ ATNRIDILD ALLRPGR DR IE P P+   R +I  I+ ++M +   I+L+ +++   G SGA++K VC EA   A+R+ R  VT +D   A+ K+ +K+   ++M  R+
Sbjct:  206 QKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVNAITKINVKRNNMESMKERR 389          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_SULTO (Proteasome-activating nucleotidase OS=Sulfolobus tokodaii GN=pan PE=3 SV=2)

HSP 1 Score: 171.785 bits (434), Expect = 3.758e-42
Identity = 85/177 (48.02%), Postives = 124/177 (70.06%), Query Frame = -1
Query:  246 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 776
            QK++GEG+R+VRE+F +AR  APSI+F+DEID+IG+ R++ G+ +G+ E+QRT+++LL ++DGF+  + +K++ ATNR+DILD ALLRPGR DR IE P PN E R +I +I+ ++M     I    +A    G SGAE+K VCTEAG  A+R  R +V   D   A+ K+  K  +
Sbjct:  206 QKFVGEGARIVREVFELARRKAPSIVFIDEIDAIGAKRVDMGT-SGEREIQRTLMQLLAEIDGFKPLDNVKIIAATNRLDILDPALLRPGRFDRLIEVPLPNFEGRKEIFRIYLQKMKTDGNIRYDILASMTEGFSGAEIKNVCTEAGYIAIRNGRKYVNMTDLITAIEKIKAKNNK 381          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_SULIY (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=pan PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.758e-42
Identity = 87/185 (47.03%), Postives = 132/185 (71.35%), Query Frame = -1
Query:  225 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV-MKKETEKNMSLRK 776
            QK++GEG+R+VRELF MA+  APSIIF+DEID+IG+ R++ G+ +G+ E+QRT+++LL +LDGF   + +K++ ATNRIDILD ALLRPGR DR IE P P+   R +I  I+ ++M +   I+L+ +++   G SGA++K VC EA   A+R+ R  VT +D   A+ K+ +K+   ++M  R+
Sbjct:  206 QKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKRNNMESMKERR 389          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_SULIM (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=pan PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.758e-42
Identity = 87/185 (47.03%), Postives = 132/185 (71.35%), Query Frame = -1
Query:  225 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV-MKKETEKNMSLRK 776
            QK++GEG+R+VRELF MA+  APSIIF+DEID+IG+ R++ G+ +G+ E+QRT+++LL +LDGF   + +K++ ATNRIDILD ALLRPGR DR IE P P+   R +I  I+ ++M +   I+L+ +++   G SGA++K VC EA   A+R+ R  VT +D   A+ K+ +K+   ++M  R+
Sbjct:  206 QKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKRNNMESMKERR 389          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_SULIL (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=pan PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.758e-42
Identity = 87/185 (47.03%), Postives = 132/185 (71.35%), Query Frame = -1
Query:  225 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV-MKKETEKNMSLRK 776
            QK++GEG+R+VRELF MA+  APSIIF+DEID+IG+ R++ G+ +G+ E+QRT+++LL +LDGF   + +K++ ATNRIDILD ALLRPGR DR IE P P+   R +I  I+ ++M +   I+L+ +++   G SGA++K VC EA   A+R+ R  VT +D   A+ K+ +K+   ++M  R+
Sbjct:  206 QKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKRNNMESMKERR 389          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_SULIK (Proteasome-activating nucleotidase OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=pan PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.758e-42
Identity = 87/185 (47.03%), Postives = 132/185 (71.35%), Query Frame = -1
Query:  225 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKV-MKKETEKNMSLRK 776
            QK++GEG+R+VRELF MA+  APSIIF+DEID+IG+ R++ G+ +G+ E+QRT+++LL +LDGF   + +K++ ATNRIDILD ALLRPGR DR IE P P+   R +I  I+ ++M +   I+L+ +++   G SGA++K VC EA   A+R+ R  VT +D   A+ K+ +K+   ++M  R+
Sbjct:  206 QKFVGEGARIVRELFEMAKRKAPSIIFIDEIDAIGAKRIDIGT-SGEREIQRTLMQLLAELDGFNPLDNVKIIAATNRIDILDPALLRPGRFDRIIEVPLPDFRGRTEIFNIYLKKMKVEDNINLELLSQLSEGFSGADIKNVCVEAAYMAIRDGRNKVTMKDLVDAITKINVKRNNMESMKERR 389          
The following BLAST results are available for this feature:
BLAST of CN186083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PRS6B_MOUSE9.889e-4348.6026S protease regulatory subunit 6B OS=Mus musculus... [more]
PSMR1_HALSA1.687e-4248.33Proteasome-activating nucleotidase 1 OS=Halobacter... [more]
PRS6B_SOLTU1.687e-4248.8526S protease regulatory subunit 6B homolog OS=Sola... [more]
PSMR_SULSO2.877e-4247.03Proteasome-activating nucleotidase OS=Sulfolobus s... [more]
PSMR_SULIN2.877e-4247.03Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULTO3.758e-4248.02Proteasome-activating nucleotidase OS=Sulfolobus t... [more]
PSMR_SULIY3.758e-4247.03Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIM3.758e-4247.03Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIL3.758e-4247.03Proteasome-activating nucleotidase OS=Sulfolobus i... [more]
PSMR_SULIK3.758e-4247.03Proteasome-activating nucleotidase OS=Sulfolobus i... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186083 ID=CN186083; Name=CN186083; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTTGCATGCGAATTTAAATTTAGATAAAACCGTTTG
CAAATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACATACAGTCA
GGCTAAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGT
TAAGGACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGC
ACATGGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTG
TTTCTTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTT
ACATGGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACAC
AGCCTTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCT
TCAAATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGG
ATATCAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTC
AATTCGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTG
TCGCCATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGG
TTGAGCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCT
GCCAGATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAA
TGATAGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATT
CTGGAGCCTTCTCCAATGTATTTCTG
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