CN186083

Overview
NameCN186083
Unique NameCN186083
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length776
Libraries
Library NameType
Washington Navel Orange Stored Fruit Pulp cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig9803 contig Csv1_Contig9803:802..1576. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_ARCFU (Proteasome-activating nucleotidase OS=Archaeoglobus fulgidus GN=pan PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.798e-52
Identity = 103/176 (58.52%), Postives = 133/176 (75.57%), Query Frame = -1
Query:  249 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKET 776
            QKYIGEG+R+VRE+F +A+E APSIIF+DE+D+I + R  S + +GD EVQRTM++LL +LDGF+    +KV+ ATNRIDILD A+LRPGR DR IE P P  E R+ I KIH+R+M L   +D K++A    GASGA++KA+CTEAGMFA+RE R  VT  DF  A+ KV+KK T
Sbjct:  213 QKYIGEGARLVREVFQLAKEKAPSIIFIDELDAIAARRTNSDT-SGDREVQRTMMQLLAELDGFDPRGDVKVIGATNRIDILDPAILRPGRFDRIIEVPLPTFEGRIQIFKIHTRKMKLAEDVDFKELARITEGASGADIKAICTEAGMFAIREERAKVTMLDFTKAIEKVLKKTT 387          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS4_DROME (26S protease regulatory subunit 4 OS=Drosophila melanogaster GN=Pros26.4 PE=1 SV=2)

HSP 1 Score: 206.068 bits (523), Expect = 1.798e-52
Identity = 99/177 (55.93%), Postives = 138/177 (77.97%), Query Frame = -1
Query:  246 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 776
            QKY+G+G ++VRELF +A EHAPSI+F+DEID++G+ R +S SG G+ E+QRTMLELLNQLDGF++   +KV+MATNRI+ LD AL+RPGRIDRKIEFP P+E+++  I  IH+ RM L   ++L ++    +  SGA++KA+CTEAG+ ALRERR+ VT EDF+ +   V+ ++ E
Sbjct:  256 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAVGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKRRIFTIHTSRMTLAEDVNLSELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKESVLYRKKE 431          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS4_RAT (26S protease regulatory subunit 4 OS=Rattus norvegicus GN=Psmc1 PE=2 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.348e-52
Identity = 101/177 (57.06%), Postives = 137/177 (77.40%), Query Frame = -1
Query:  246 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 776
            QKY+G+G ++VRELF +A EHAPSI+F+DEID+IG+ R +S SG G+ E+QRTMLELLNQLDGF++   +KV+MATNRI+ LD AL+RPGRIDRKIEFP P+E+++  I +IH+ RM L   + L  +    +  SGA++KA+CTEAG+ ALRERR+ VT EDF+ +   V+ K+ E
Sbjct:  257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS4_MOUSE (26S protease regulatory subunit 4 OS=Mus musculus GN=Psmc1 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.348e-52
Identity = 101/177 (57.06%), Postives = 137/177 (77.40%), Query Frame = -1
Query:  246 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 776
            QKY+G+G ++VRELF +A EHAPSI+F+DEID+IG+ R +S SG G+ E+QRTMLELLNQLDGF++   +KV+MATNRI+ LD AL+RPGRIDRKIEFP P+E+++  I +IH+ RM L   + L  +    +  SGA++KA+CTEAG+ ALRERR+ VT EDF+ +   V+ K+ E
Sbjct:  257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS4_HUMAN (26S protease regulatory subunit 4 OS=Homo sapiens GN=PSMC1 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.348e-52
Identity = 101/177 (57.06%), Postives = 137/177 (77.40%), Query Frame = -1
Query:  246 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 776
            QKY+G+G ++VRELF +A EHAPSI+F+DEID+IG+ R +S SG G+ E+QRTMLELLNQLDGF++   +KV+MATNRI+ LD AL+RPGRIDRKIEFP P+E+++  I +IH+ RM L   + L  +    +  SGA++KA+CTEAG+ ALRERR+ VT EDF+ +   V+ K+ E
Sbjct:  257 QKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDDLIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENVLYKKQE 432          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS4_CHICK (26S protease regulatory subunit 4 OS=Gallus gallus GN=PSMC1 PE=2 SV=1)

HSP 1 Score: 205.297 bits (521), Expect = 3.067e-52
Identity = 100/177 (56.50%), Postives = 137/177 (77.40%), Query Frame = -1
Query:  246 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 776
            QKY+G+G ++VRELF +A EH PSI+F+DEID+IG+ R +S SG G+ E+QRTMLELLNQLDGF++   +KV+MATNRI+ LD AL+RPGRIDRKIEFP P+E+++  I +IH+ RM L   + L ++    +  SGA++KA+CTEAG+ ALRERR+ VT EDF+ +    + K+TE
Sbjct:  257 QKYLGDGPKLVRELFRVAEEHGPSIVFIDEIDAIGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKRIFQIHTSRMTLADDVTLDELIMAKDDLSGADIKAICTEAGLMALRERRMKVTNEDFKKSKENFLYKKTE 432          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_PYRKO (Proteasome-activating nucleotidase OS=Pyrococcus kodakaraensis GN=pan PE=3 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.006e-52
Identity = 103/175 (58.86%), Postives = 140/175 (80.00%), Query Frame = -1
Query:  252 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 776
            +K+IGEG+R+V ELF +A+E AP+IIF+DEID+IG+ RM+  +G G+ EV RT+++LL ++DGF+    +KV+ ATNR DILD ALLRPGR DR IE P P+ + RL+ILK+H+R+MNL +G+DL+ IAE   GASGA+LKA+ TEAGMFA+R+RR +VTQ+DF  AV KV+  E
Sbjct:  210 RKFIGEGARLVHELFELAKEKAPTIIFIDEIDAIGAKRMDETTG-GEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDYQGRLEILKVHTRKMNL-KGVDLRVIAEITEGASGADLKAIATEAGMFAIRDRRTYVTQDDFLKAVDKVIGSE 382          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS4_CAEEL (Probable 26S protease regulatory subunit 4 OS=Caenorhabditis elegans GN=rpt-2 PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 4.006e-52
Identity = 100/177 (56.50%), Postives = 140/177 (79.10%), Query Frame = -1
Query:  246 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETE 776
            QKY+G+G +MVRELF +A E+APSI+F+DEID++G+ R +S SG G+ E+QRTMLELLNQLDGF++   +KVLMATNRI+ LD AL+RPGRIDRKIEFP P+E+++  I +IH+ RM L + ++L++     +  SGA++KA+CTEAG+ ALRERR+ VT EDF+ +   V+ ++ E
Sbjct:  260 QKYLGDGPKMVRELFRVAEENAPSIVFIDEIDAVGTKRYDSNSG-GEREIQRTMLELLNQLDGFDSRGDVKVLMATNRIESLDPALIRPGRIDRKIEFPLPDEKTKRRIFQIHTSRMTLGKEVNLEEFITAKDELSGADIKAMCTEAGLLALRERRMRVTMEDFQKSKENVLYRKKE 435          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PSMR_THEGJ (Proteasome-activating nucleotidase OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=pan PE=3 SV=1)

HSP 1 Score: 202.601 bits (514), Expect = 1.988e-51
Identity = 104/175 (59.43%), Postives = 137/175 (78.29%), Query Frame = -1
Query:  252 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKE 776
            +K+IGEG+R+V ELF MA+E AP+IIF+DEID+IG+ RM+  +G G+ EV RT+++LL ++DGF+    +KV+ ATNR DILD ALLRPGR DR IE P P+   RL+ILK+H+R+MNL R +DL  IA+   GASGA+LKA+ TEAGMFA+R+RR +VTQEDF  AV KV+  E
Sbjct:  210 RKFIGEGARLVHELFEMAKEKAPTIIFIDEIDAIGAKRMDETTG-GEREVNRTLMQLLAEMDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRLIEVPLPDFRGRLEILKVHTRKMNL-RNVDLSIIADITEGASGADLKAIATEAGMFAIRDRRTYVTQEDFLKAVDKVLGAE 382          
BLAST of CN186083 vs. ExPASy Swiss-Prot
Match: PRS4_YEAST (26S protease regulatory subunit 4 homolog OS=Saccharomyces cerevisiae GN=RPT2 PE=1 SV=3)

HSP 1 Score: 202.216 bits (513), Expect = 2.596e-51
Identity = 98/180 (54.44%), Postives = 139/180 (77.22%), Query Frame = -1
Query:  237 QKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSARMESGSGNGDSEVQRTMLELLNQLDGFEASNKIKVLMATNRIDILDQALLRPGRIDRKIEFPNPNEESRLDILKIHSRRMNLMRGIDLKKIAEKMNGASGAELKAVCTEAGMFALRERRIHVTQEDFEMAVAKVMKKETEKNM 776
            QKY+G+G R+ R++F +A E+APSI+F+DEID+IG+ R +S SG G+ E+QRTMLELLNQLDGF+    +KV+MATN+I+ LD AL+RPGRIDRKI F NP+  ++  IL IH+ +MNL   ++L+ +    +  SGA+++A+CTEAG+ ALRERR+ VT EDF+ A  +VMK + E+N+
Sbjct:  254 QKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSG-GEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKNKVEENL 432          
The following BLAST results are available for this feature:
BLAST of CN186083 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 377
Match NameE-valueIdentityDescription
PSMR_ARCFU1.798e-5258.52Proteasome-activating nucleotidase OS=Archaeoglobu... [more]
PRS4_DROME1.798e-5255.9326S protease regulatory subunit 4 OS=Drosophila me... [more]
PRS4_RAT2.348e-5257.0626S protease regulatory subunit 4 OS=Rattus norveg... [more]
PRS4_MOUSE2.348e-5257.0626S protease regulatory subunit 4 OS=Mus musculus ... [more]
PRS4_HUMAN2.348e-5257.0626S protease regulatory subunit 4 OS=Homo sapiens ... [more]
PRS4_CHICK3.067e-5256.5026S protease regulatory subunit 4 OS=Gallus gallus... [more]
PSMR_PYRKO4.006e-5258.86Proteasome-activating nucleotidase OS=Pyrococcus k... [more]
PRS4_CAEEL4.006e-5256.50Probable 26S protease regulatory subunit 4 OS=Caen... [more]
PSMR_THEGJ1.988e-5159.43Proteasome-activating nucleotidase OS=Thermococcus... [more]
PRS4_YEAST2.596e-5154.4426S protease regulatory subunit 4 homolog OS=Sacch... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS05_0002F11_f Washington Navel Orange Stored Fruit Pulp cDNA Library Citrus sinensis cDNA clone CS_WEb0002F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CN186083 ID=CN186083; Name=CN186083; organism=Citrus sinensis; type=EST; length=776bp
TTTTTTTTTTTTTTTTTGCATGCGAATTTAAATTTAGATAAAACCGTTTG
CAAATTTGTTTATCATAAGAGGCTAGAGCGCAAGAAAAGACATACAGTCA
GGCTAAAAGGGCCTATCGTGCAAATGTCCCAGAACACGAGTGAGTGCCGT
TAAGGACTACTTGAATCTTGCTCAGAAAATAAGCAAATACACAGCACAGC
ACATGGAAATGATTACTTCCACAACTTCCGCAAGGACATGTTCTTCTCTG
TTTCTTTCTTCATGACCTTGGCCACTGCCATCTCAAAATCTTCCTGTGTT
ACATGGATCCTTCTCTCTCTTAGAGCAAACATACCGGCTTCTGTGCACAC
AGCCTTAAGCTCCGCACCAGATGCACCATTCATCTTCTCGGCAATCTTCT
TCAAATCAATGCCACGCATTAAATTCATTCTTCTTGAATGAATTTTTAGG
ATATCAAGACGAGACTCTTCATTAGGATTTGGAAATTCAATCTTTCTGTC
AATTCGTCCTGGCCTGAGAAGAGCTTGATCGAGAATATCAATTCGATTTG
TCGCCATGAGAACCTTAATTTTGTTTGATGCTTCAAATCCATCAAGCTGG
TTGAGCAGCTCCAGCATAGTCCTCTGCACCTCACTGTCACCATTTCCGCT
GCCAGATTCCATTCGGGCAGATCCGATACTGTCAATTTCATCCATAAAAA
TGATAGACGGAGCATGTTCCCTTGCCATAACAAAAAGTTCTCTAACCATT
CTGGAGCCTTCTCCAATGTATTTCTG
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